Wall clock time and date at job start Fri Apr 10 2020 18:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.87449 * 2 1 4 4 C 1.54323 * 109.88214 * 121.01345 * 2 1 3 5 5 H 1.09002 * 110.72057 * 23.40260 * 4 2 1 6 6 N 1.46505 * 110.71829 * 260.30669 * 4 2 1 7 7 C 1.36938 * 119.99525 * 157.44073 * 6 4 2 8 8 H 1.08006 * 120.00198 * 0.02562 * 7 6 4 9 9 C 1.38814 * 119.99618 * 179.97438 * 7 6 4 10 10 N 1.31611 * 120.00172 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99664 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47377 * 59.99997 * 11 9 7 13 13 H 1.48509 * 109.46997 * 180.02562 * 11 9 7 14 14 H 1.48505 * 109.47537 * 299.99867 * 11 9 7 15 15 C 1.55153 * 103.10236 * 141.85508 * 4 2 1 16 16 C 1.55386 * 101.36753 * 324.50743 * 15 4 2 17 17 N 1.47021 * 110.01293 * 238.89988 * 2 1 3 18 18 C 1.34778 * 125.64615 * 61.60835 * 17 2 1 19 19 O 1.21593 * 120.00147 * 359.97438 * 18 17 2 20 20 C 1.47530 * 120.00024 * 180.02562 * 18 17 2 21 21 C 1.36587 * 125.77038 * 179.70978 * 20 18 17 22 22 N 1.34818 * 106.83914 * 179.89835 * 21 20 18 23 23 C 1.46497 * 126.59866 * 180.11134 * 22 21 20 24 24 C 1.50694 * 109.47384 * 125.27189 * 23 22 21 25 25 N 1.34775 * 120.00217 * 180.02562 * 24 23 22 26 26 O 1.21283 * 120.00362 * 359.97438 * 24 23 22 27 27 N 1.40212 * 106.80931 * 0.35866 * 22 21 20 28 28 N 1.28764 * 108.36638 * 359.77121 * 27 22 21 29 29 H 1.08994 * 109.47034 * 298.98522 * 1 2 3 30 30 H 1.09002 * 109.46825 * 58.98459 * 1 2 3 31 31 H 1.09000 * 109.47200 * 178.98233 * 1 2 3 32 32 H 0.96996 * 120.00388 * 337.43652 * 6 4 2 33 33 H 0.97004 * 120.00220 * 179.97438 * 10 9 7 34 34 H 1.09003 * 111.00505 * 82.48412 * 15 4 2 35 35 H 1.09001 * 111.00757 * 206.33495 * 15 4 2 36 36 H 1.08998 * 110.34947 * 278.13041 * 16 15 4 37 37 H 1.08998 * 110.44218 * 155.87708 * 16 15 4 38 38 H 1.08003 * 126.58523 * 0.04031 * 21 20 18 39 39 H 1.08999 * 109.47081 * 245.27552 * 23 22 21 40 40 H 1.09003 * 109.46871 * 5.27440 * 23 22 21 41 41 H 0.97000 * 120.00010 * 359.97438 * 25 24 23 42 42 H 0.97007 * 120.00623 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7477 1.2438 5 1 1.3061 -1.4456 1.6187 6 7 2.4481 0.1992 2.2902 7 6 2.4971 -0.2063 3.5972 8 1 2.2463 -1.2244 3.8566 9 6 2.8702 0.6907 4.5887 10 7 3.1764 1.9311 4.2726 11 14 2.9378 0.1373 6.3715 12 1 3.9129 -0.9744 6.5082 13 1 3.3604 1.2751 7.2273 14 1 1.5933 -0.3284 6.7967 15 6 3.2921 -1.5098 0.7000 16 6 2.8197 -1.8769 -0.7341 17 7 2.0332 -0.7136 -1.1829 18 6 1.8127 -0.3618 -2.4651 19 8 1.1458 0.6226 -2.7195 20 6 2.3795 -1.1718 -3.5602 21 6 2.2264 -0.9281 -4.8954 22 7 2.8997 -1.8962 -5.5488 23 6 3.0223 -2.0472 -7.0008 24 6 4.4798 -2.1133 -7.3777 25 7 4.8361 -2.2519 -8.6702 26 8 5.3324 -2.0410 -6.5182 27 7 3.4554 -2.7340 -4.5715 28 7 3.1289 -2.2777 -3.4125 29 1 -0.3633 0.4980 0.8989 30 1 -0.3633 0.5295 -0.8808 31 1 -0.3633 -1.0275 -0.0183 32 1 2.6738 1.1133 2.0573 33 1 3.4367 2.5581 4.9655 34 1 4.1679 -0.8616 0.6692 35 1 3.4907 -2.4043 1.2904 36 1 2.1957 -2.7703 -0.7106 37 1 3.6769 -2.0309 -1.3896 38 1 1.6740 -0.1145 -5.3420 39 1 2.5240 -2.9646 -7.3141 40 1 2.5575 -1.1941 -7.4953 41 1 4.1543 -2.3094 -9.3577 42 1 5.7743 -2.2949 -8.9128 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987577631.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:37 Heat of formation + Delta-G solvation = 56.426807 kcal Electronic energy + Delta-G solvation = -26857.399655 eV Core-core repulsion = 22875.797230 eV Total energy + Delta-G solvation = -3981.602425 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.154 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.38861 -40.04506 -39.55525 -37.24994 -34.92987 -34.36010 -33.98170 -31.74055 -31.02277 -30.64732 -29.30288 -28.51442 -25.08190 -24.08156 -23.29544 -22.76644 -21.89624 -21.31410 -20.10453 -19.31855 -18.24096 -17.79724 -17.16574 -16.98473 -16.44644 -16.21765 -15.65780 -15.55765 -14.94169 -14.73830 -14.55314 -14.27820 -13.73985 -13.54857 -13.37403 -13.19068 -12.89933 -12.67184 -12.13607 -12.02844 -11.79896 -11.70088 -11.21634 -11.12877 -10.95090 -10.90444 -10.69492 -10.47574 -10.41304 -10.37310 -10.17424 -9.94663 -9.78687 -9.62917 -9.39179 -8.85630 -8.26734 -6.95037 -5.74514 -3.04352 0.92644 1.59523 1.74580 1.87465 2.71154 3.17936 3.42964 3.47027 3.51454 3.52387 3.85385 4.02949 4.13450 4.23540 4.52555 4.61488 4.80025 5.06915 5.23933 5.29403 5.50021 5.56991 5.73069 5.75113 5.86143 5.95326 5.97524 6.10545 6.16893 6.19876 6.31741 6.48008 6.55355 6.57596 6.70284 6.75531 6.82625 7.05536 7.52400 7.72284 7.77408 7.87246 8.36138 8.43239 9.54312 10.09618 10.44632 11.47748 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.027994 B = 0.002438 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.985963 B =11482.905897 C =11940.941549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.127 3.873 3 H 0.079 0.921 4 C 0.176 3.824 5 H 0.066 0.934 6 N -0.715 5.715 7 C -0.241 4.241 8 H 0.072 0.928 9 C -0.012 4.012 10 N -0.931 5.931 11 Si 0.908 3.092 12 H -0.286 1.286 13 H -0.292 1.292 14 H -0.286 1.286 15 C -0.156 4.156 16 C 0.099 3.901 17 N -0.591 5.591 18 C 0.613 3.387 19 O -0.545 6.545 20 C -0.086 4.086 21 C 0.090 3.910 22 N -0.361 5.361 23 C 0.105 3.895 24 C 0.503 3.497 25 N -0.851 5.851 26 O -0.506 6.506 27 N -0.038 5.038 28 N -0.199 5.199 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.050 0.950 32 H 0.386 0.614 33 H 0.256 0.744 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.088 0.912 38 H 0.206 0.794 39 H 0.129 0.871 40 H 0.135 0.865 41 H 0.403 0.597 42 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.689 -9.297 -30.213 31.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.024 3.976 3 H 0.097 0.903 4 C 0.064 3.936 5 H 0.084 0.916 6 N -0.355 5.355 7 C -0.372 4.372 8 H 0.090 0.910 9 C -0.208 4.208 10 N -0.579 5.579 11 Si 0.739 3.261 12 H -0.212 1.212 13 H -0.218 1.218 14 H -0.212 1.212 15 C -0.197 4.197 16 C -0.024 4.024 17 N -0.322 5.322 18 C 0.399 3.601 19 O -0.423 6.423 20 C -0.224 4.224 21 C -0.065 4.065 22 N -0.146 5.146 23 C -0.021 4.021 24 C 0.284 3.716 25 N -0.417 5.417 26 O -0.378 6.378 27 N -0.019 5.019 28 N -0.074 5.074 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.220 0.780 33 H 0.066 0.934 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.107 0.893 38 H 0.222 0.778 39 H 0.147 0.853 40 H 0.153 0.847 41 H 0.232 0.768 42 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -1.802 -9.983 -29.270 30.978 hybrid contribution -0.258 0.777 -0.056 0.820 sum -2.060 -9.206 -29.327 30.807 Atomic orbital electron populations 1.22044 0.94778 1.01641 1.02716 1.21967 0.94456 0.96934 0.84248 0.90278 1.21263 0.93749 0.91566 0.87013 0.91586 1.42343 1.80566 1.10269 1.02348 1.19172 1.38885 0.95835 0.83292 0.91032 1.24759 1.02189 0.95770 0.98078 1.69655 1.52165 1.03640 1.32426 0.86255 0.77743 0.77212 0.84861 1.21226 1.21755 1.21242 1.23662 1.01086 1.01634 0.93349 1.22657 0.95535 0.87426 0.96761 1.48299 1.50867 1.28729 1.04339 1.16330 0.80060 0.83222 0.80490 1.90778 1.41146 1.27157 1.83246 1.21470 1.08149 0.99189 0.93579 1.23273 0.96633 0.94081 0.92556 1.49818 1.36637 1.20710 1.07460 1.21685 0.96435 1.07434 0.76548 1.20364 0.90816 0.76998 0.83378 1.43701 1.12728 1.77668 1.07584 1.90927 1.51533 1.46787 1.48570 1.82130 1.16895 1.13622 0.89224 1.74787 1.08382 1.07994 1.16195 0.91036 0.91983 0.93066 0.78009 0.93395 0.90770 0.90543 0.91741 0.89338 0.77772 0.85327 0.84687 0.76801 0.75858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 9.10 37.16 0.34 -2.32 16 2 C 0.13 2.39 3.20 -66.95 -0.21 2.18 16 3 H 0.08 1.64 7.70 -51.93 -0.40 1.24 16 4 C 0.18 3.56 3.11 -66.10 -0.21 3.35 16 5 H 0.07 1.33 7.82 -51.93 -0.41 0.92 16 6 N -0.71 -17.93 5.24 -51.65 -0.27 -18.20 16 7 C -0.24 -6.62 9.97 -15.06 -0.15 -6.77 16 8 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 9 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 10 N -0.93 -28.23 13.06 55.49 0.72 -27.50 16 11 Si 0.91 22.43 29.55 -169.99 -5.02 17.41 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 13 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 14 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 15 C -0.16 -2.86 6.80 -24.33 -0.17 -3.02 16 16 C 0.10 1.61 6.14 -2.27 -0.01 1.60 16 17 N -0.59 -10.28 3.07 -163.93 -0.50 -10.79 16 18 C 0.61 10.43 7.64 -12.47 -0.10 10.33 16 19 O -0.55 -10.17 15.92 5.28 0.08 -10.08 16 20 C -0.09 -1.24 6.84 -83.55 -0.57 -1.82 16 21 C 0.09 0.92 11.27 -16.84 -0.19 0.73 16 22 N -0.36 -3.45 3.41 -62.25 -0.21 -3.66 16 23 C 0.10 0.38 7.02 -5.20 -0.04 0.35 16 24 C 0.50 3.17 8.13 -10.99 -0.09 3.08 16 25 N -0.85 -1.44 8.87 31.22 0.28 -1.16 16 26 O -0.51 -6.47 16.57 5.55 0.09 -6.38 16 27 N -0.04 -0.54 12.89 60.35 0.78 0.24 16 28 N -0.20 -3.04 9.39 32.85 0.31 -2.73 16 29 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 30 H 0.06 1.08 6.91 -51.93 -0.36 0.72 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.39 10.39 7.53 -40.82 -0.31 10.09 16 33 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 34 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 35 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.09 1.45 6.13 -51.93 -0.32 1.13 16 38 H 0.21 1.33 8.06 -52.48 -0.42 0.90 16 39 H 0.13 0.10 8.14 -51.93 -0.42 -0.33 16 40 H 0.14 -0.09 8.08 -51.93 -0.42 -0.51 16 41 H 0.40 -0.89 8.83 -40.82 -0.36 -1.25 16 42 H 0.41 0.71 8.93 -40.82 -0.36 0.35 16 LS Contribution 359.01 15.07 5.41 5.41 Total: -1.00 -39.15 359.01 -5.26 -44.42 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -5.44 Total: 5.75 kcal Atomic # 6 Polarization: 8.76 SS G_CDS: -1.49 Total: 7.27 kcal Atomic # 7 Polarization: -64.90 SS G_CDS: 1.10 Total: -63.80 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: 0.18 Total: -16.46 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -39.15 -5.26 -44.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987577631.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.843 kcal (2) G-P(sol) polarization free energy of solvation -39.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds