Wall clock time and date at job start Fri Apr 10 2020 18:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.87449 * 2 1 4 4 C 1.54323 * 109.88214 * 121.01345 * 2 1 3 5 5 H 1.09002 * 110.72057 * 23.40260 * 4 2 1 6 6 N 1.46505 * 110.71829 * 260.30669 * 4 2 1 7 7 C 1.36938 * 119.99525 * 157.44073 * 6 4 2 8 8 H 1.08006 * 120.00198 * 0.02562 * 7 6 4 9 9 C 1.38814 * 119.99618 * 179.97438 * 7 6 4 10 10 N 1.31611 * 120.00172 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99664 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47377 * 59.99997 * 11 9 7 13 13 H 1.48509 * 109.46997 * 180.02562 * 11 9 7 14 14 H 1.48505 * 109.47537 * 299.99867 * 11 9 7 15 15 C 1.55153 * 103.10236 * 141.85508 * 4 2 1 16 16 C 1.55386 * 101.36753 * 324.50743 * 15 4 2 17 17 N 1.47021 * 110.01293 * 238.89988 * 2 1 3 18 18 C 1.34778 * 125.64615 * 61.60835 * 17 2 1 19 19 O 1.21593 * 120.00147 * 359.97438 * 18 17 2 20 20 C 1.47530 * 120.00024 * 180.02562 * 18 17 2 21 21 C 1.36587 * 125.77038 * 179.70978 * 20 18 17 22 22 N 1.34818 * 106.83914 * 179.89835 * 21 20 18 23 23 C 1.46497 * 126.59866 * 180.11134 * 22 21 20 24 24 C 1.50694 * 109.47384 * 125.27189 * 23 22 21 25 25 N 1.34775 * 120.00217 * 180.02562 * 24 23 22 26 26 O 1.21283 * 120.00362 * 359.97438 * 24 23 22 27 27 N 1.40212 * 106.80931 * 0.35866 * 22 21 20 28 28 N 1.28764 * 108.36638 * 359.77121 * 27 22 21 29 29 H 1.08994 * 109.47034 * 298.98522 * 1 2 3 30 30 H 1.09002 * 109.46825 * 58.98459 * 1 2 3 31 31 H 1.09000 * 109.47200 * 178.98233 * 1 2 3 32 32 H 0.96996 * 120.00388 * 337.43652 * 6 4 2 33 33 H 0.97004 * 120.00220 * 179.97438 * 10 9 7 34 34 H 1.09003 * 111.00505 * 82.48412 * 15 4 2 35 35 H 1.09001 * 111.00757 * 206.33495 * 15 4 2 36 36 H 1.08998 * 110.34947 * 278.13041 * 16 15 4 37 37 H 1.08998 * 110.44218 * 155.87708 * 16 15 4 38 38 H 1.08003 * 126.58523 * 0.04031 * 21 20 18 39 39 H 1.08999 * 109.47081 * 245.27552 * 23 22 21 40 40 H 1.09003 * 109.46871 * 5.27440 * 23 22 21 41 41 H 0.97000 * 120.00010 * 359.97438 * 25 24 23 42 42 H 0.97007 * 120.00623 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7477 1.2438 5 1 1.3061 -1.4456 1.6187 6 7 2.4481 0.1992 2.2902 7 6 2.4971 -0.2063 3.5972 8 1 2.2463 -1.2244 3.8566 9 6 2.8702 0.6907 4.5887 10 7 3.1764 1.9311 4.2726 11 14 2.9378 0.1373 6.3715 12 1 3.9129 -0.9744 6.5082 13 1 3.3604 1.2751 7.2273 14 1 1.5933 -0.3284 6.7967 15 6 3.2921 -1.5098 0.7000 16 6 2.8197 -1.8769 -0.7341 17 7 2.0332 -0.7136 -1.1829 18 6 1.8127 -0.3618 -2.4651 19 8 1.1458 0.6226 -2.7195 20 6 2.3795 -1.1718 -3.5602 21 6 2.2264 -0.9281 -4.8954 22 7 2.8997 -1.8962 -5.5488 23 6 3.0223 -2.0472 -7.0008 24 6 4.4798 -2.1133 -7.3777 25 7 4.8361 -2.2519 -8.6702 26 8 5.3324 -2.0410 -6.5182 27 7 3.4554 -2.7340 -4.5715 28 7 3.1289 -2.2777 -3.4125 29 1 -0.3633 0.4980 0.8989 30 1 -0.3633 0.5295 -0.8808 31 1 -0.3633 -1.0275 -0.0183 32 1 2.6738 1.1133 2.0573 33 1 3.4367 2.5581 4.9655 34 1 4.1679 -0.8616 0.6692 35 1 3.4907 -2.4043 1.2904 36 1 2.1957 -2.7703 -0.7106 37 1 3.6769 -2.0309 -1.3896 38 1 1.6740 -0.1145 -5.3420 39 1 2.5240 -2.9646 -7.3141 40 1 2.5575 -1.1941 -7.4953 41 1 4.1543 -2.3094 -9.3577 42 1 5.7743 -2.2949 -8.9128 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987577631.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:36 Heat of formation + Delta-G solvation = 22.807236 kcal Electronic energy + Delta-G solvation = -26858.857509 eV Core-core repulsion = 22875.797230 eV Total energy + Delta-G solvation = -3983.060279 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.154 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.27440 -41.06254 -40.44702 -38.71857 -35.97496 -35.55914 -34.75674 -33.40565 -32.41465 -31.84483 -30.75428 -29.36526 -26.82937 -25.31084 -24.75954 -23.85718 -23.08874 -21.97772 -21.56942 -20.47066 -19.22136 -18.87665 -18.28897 -17.83637 -17.55632 -17.10242 -16.65394 -16.53386 -16.42081 -15.83453 -15.63566 -15.39597 -15.35788 -14.81386 -14.68609 -14.48685 -14.17898 -13.80491 -13.58854 -13.29780 -13.15723 -13.05205 -12.88832 -12.66403 -12.53518 -12.20964 -12.16045 -12.05510 -11.80315 -11.69677 -11.48626 -11.13708 -11.04094 -10.85828 -10.73587 -10.36008 -9.65376 -9.00844 -7.91588 -5.21639 0.12027 0.65278 0.99350 1.46613 1.50375 1.53651 1.59307 1.89160 2.21828 2.37683 2.59334 3.10811 3.39638 3.45160 3.65119 3.75605 3.79945 3.90776 3.97215 4.06999 4.10133 4.21857 4.34413 4.37292 4.44957 4.53080 4.60995 4.71612 4.88382 5.03587 5.07985 5.22595 5.25892 5.33826 5.37548 5.45559 5.56483 5.81602 6.28286 6.36915 6.47713 6.83607 7.10066 7.25233 7.34878 8.06368 8.31254 9.31735 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.027994 B = 0.002438 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.985963 B =11482.905897 C =11940.941549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.134 3.866 3 H 0.052 0.948 4 C 0.173 3.827 5 H 0.074 0.926 6 N -0.727 5.727 7 C -0.237 4.237 8 H 0.083 0.917 9 C -0.077 4.077 10 N -0.971 5.971 11 Si 0.975 3.025 12 H -0.277 1.277 13 H -0.299 1.299 14 H -0.276 1.276 15 C -0.148 4.148 16 C 0.114 3.886 17 N -0.597 5.597 18 C 0.613 3.387 19 O -0.567 6.567 20 C -0.123 4.123 21 C 0.118 3.882 22 N -0.346 5.346 23 C 0.095 3.905 24 C 0.499 3.501 25 N -0.825 5.825 26 O -0.583 6.583 27 N -0.069 5.069 28 N -0.224 5.224 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.372 0.628 33 H 0.250 0.750 34 H 0.052 0.948 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.247 0.753 39 H 0.167 0.833 40 H 0.190 0.810 41 H 0.425 0.575 42 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.990 -10.863 -32.947 34.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.030 3.970 3 H 0.070 0.930 4 C 0.063 3.937 5 H 0.092 0.908 6 N -0.367 5.367 7 C -0.369 4.369 8 H 0.100 0.900 9 C -0.269 4.269 10 N -0.622 5.622 11 Si 0.804 3.196 12 H -0.203 1.203 13 H -0.226 1.226 14 H -0.202 1.202 15 C -0.189 4.189 16 C -0.008 4.008 17 N -0.328 5.328 18 C 0.401 3.599 19 O -0.447 6.447 20 C -0.262 4.262 21 C -0.038 4.038 22 N -0.131 5.131 23 C -0.028 4.028 24 C 0.282 3.718 25 N -0.391 5.391 26 O -0.461 6.461 27 N -0.049 5.049 28 N -0.099 5.099 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.204 0.796 33 H 0.059 0.941 34 H 0.071 0.929 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.107 0.893 38 H 0.263 0.737 39 H 0.184 0.816 40 H 0.207 0.793 41 H 0.258 0.742 42 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -3.127 -11.638 -32.135 34.320 hybrid contribution 0.144 1.232 0.493 1.335 sum -2.983 -10.405 -31.642 33.442 Atomic orbital electron populations 1.21930 0.93447 1.02486 1.02167 1.21705 0.95384 0.95434 0.84512 0.93009 1.21419 0.94660 0.91076 0.86561 0.90811 1.42498 1.80882 1.10426 1.02849 1.19591 1.36917 0.96082 0.84282 0.89957 1.25594 1.03072 0.95975 1.02255 1.69829 1.54226 1.04848 1.33249 0.85189 0.78084 0.76515 0.79812 1.20349 1.22586 1.20183 1.23504 0.99210 1.01256 0.94970 1.22559 0.95764 0.87562 0.94956 1.48327 1.51254 1.28905 1.04355 1.16677 0.79490 0.83092 0.80654 1.90750 1.42213 1.28138 1.83587 1.21321 1.10337 1.00086 0.94419 1.23826 0.94943 0.93912 0.91156 1.50117 1.34630 1.19169 1.09172 1.22406 0.95245 1.11827 0.73320 1.20852 0.91367 0.75846 0.83762 1.43556 1.13651 1.75134 1.06785 1.90914 1.53619 1.50798 1.50795 1.82024 1.18012 1.15104 0.89762 1.74721 1.09031 1.08658 1.17450 0.91867 0.92142 0.91461 0.79626 0.94107 0.92934 0.89413 0.89924 0.89266 0.73697 0.81590 0.79280 0.74180 0.75713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.88 9.10 71.98 0.66 -4.23 16 2 C 0.13 5.11 3.20 45.34 0.15 5.25 16 3 H 0.05 2.26 7.70 -2.38 -0.02 2.24 16 4 C 0.17 7.04 3.11 46.18 0.14 7.18 16 5 H 0.07 2.91 7.82 -2.39 -0.02 2.89 16 6 N -0.73 -37.34 5.24 -317.32 -1.66 -39.00 16 7 C -0.24 -13.12 9.97 84.03 0.84 -12.28 16 8 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 9 C -0.08 -4.45 5.50 84.86 0.47 -3.98 16 10 N -0.97 -60.51 13.06 21.65 0.28 -60.23 16 11 Si 0.98 46.54 29.55 68.60 2.03 48.56 16 12 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 13 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 14 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 15 C -0.15 -5.46 6.80 32.15 0.22 -5.24 16 16 C 0.11 3.67 6.14 87.02 0.53 4.21 16 17 N -0.60 -20.78 3.07 -790.82 -2.43 -23.21 16 18 C 0.61 20.60 7.64 86.69 0.66 21.26 16 19 O -0.57 -20.87 15.92 -4.01 -0.06 -20.93 16 20 C -0.12 -3.43 6.84 40.82 0.28 -3.15 16 21 C 0.12 2.09 11.27 83.85 0.95 3.04 16 22 N -0.35 -5.63 3.41 -350.85 -1.20 -6.83 16 23 C 0.09 0.28 7.02 85.63 0.60 0.88 16 24 C 0.50 5.08 8.13 87.66 0.71 5.79 16 25 N -0.83 -0.34 8.87 -173.54 -1.54 -1.88 16 26 O -0.58 -14.72 16.57 -3.04 -0.05 -14.77 16 27 N -0.07 -1.85 12.89 37.02 0.48 -1.37 16 28 N -0.22 -6.75 9.39 -50.00 -0.47 -7.22 16 29 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.06 2.09 6.91 -2.39 -0.02 2.07 16 31 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.37 20.91 7.53 -92.71 -0.70 20.22 16 33 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 34 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 36 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 37 H 0.09 2.93 6.13 -2.39 -0.01 2.91 16 38 H 0.25 2.05 8.06 -2.91 -0.02 2.02 16 39 H 0.17 -0.64 8.14 -2.39 -0.02 -0.66 16 40 H 0.19 -1.48 8.08 -2.39 -0.02 -1.49 16 41 H 0.43 -3.64 8.83 -92.71 -0.82 -4.46 16 42 H 0.41 0.57 8.93 -92.70 -0.83 -0.25 16 Total: -1.00 -90.29 359.01 0.34 -89.95 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: -1.24 Total: 18.18 kcal Atomic # 6 Polarization: 12.54 SS G_CDS: 6.20 Total: 18.75 kcal Atomic # 7 Polarization: -133.20 SS G_CDS: -6.53 Total: -139.74 kcal Atomic # 8 Polarization: -35.58 SS G_CDS: -0.11 Total: -35.70 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.56 kcal Total: -90.29 0.34 -89.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987577631.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.756 kcal (2) G-P(sol) polarization free energy of solvation -90.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds