Wall clock time and date at job start Fri Apr 10 2020 18:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.87461 * 2 1 4 4 C 1.54327 * 109.87866 * 238.98735 * 2 1 3 5 5 H 1.08995 * 110.72297 * 100.02622 * 4 2 1 6 6 N 1.46495 * 110.71923 * 336.74687 * 4 2 1 7 7 C 1.36943 * 119.99721 * 111.89941 * 6 4 2 8 8 H 1.08004 * 119.99478 * 359.97438 * 7 6 4 9 9 C 1.38806 * 119.99991 * 180.02562 * 7 6 4 10 10 N 1.31625 * 119.99900 * 179.97438 * 9 7 6 11 11 Si 1.86800 * 120.00254 * 359.97438 * 9 7 6 12 12 H 1.48495 * 109.47052 * 90.00102 * 11 9 7 13 13 H 1.48500 * 109.47125 * 210.00515 * 11 9 7 14 14 H 1.48503 * 109.46818 * 330.00424 * 11 9 7 15 15 C 1.55160 * 102.93727 * 218.38953 * 4 2 1 16 16 C 1.54907 * 101.62052 * 35.48104 * 15 4 2 17 17 N 1.47018 * 109.88140 * 121.17687 * 2 1 3 18 18 C 1.34774 * 125.65135 * 298.40876 * 17 2 1 19 19 O 1.21598 * 120.00027 * 0.02562 * 18 17 2 20 20 C 1.47529 * 120.00274 * 180.02562 * 18 17 2 21 21 C 1.36595 * 125.76874 * 179.72137 * 20 18 17 22 22 N 1.34816 * 106.83356 * 179.89925 * 21 20 18 23 23 C 1.46506 * 126.58994 * 180.10756 * 22 21 20 24 24 C 1.50697 * 109.46917 * 125.26890 * 23 22 21 25 25 N 1.34780 * 120.00118 * 179.97438 * 24 23 22 26 26 O 1.21288 * 120.00457 * 359.97438 * 24 23 22 27 27 N 1.40213 * 106.81405 * 0.35302 * 22 21 20 28 28 N 1.28756 * 108.36484 * 359.77118 * 27 22 21 29 29 H 1.08997 * 109.47079 * 186.55169 * 1 2 3 30 30 H 1.08997 * 109.46744 * 306.54985 * 1 2 3 31 31 H 1.09001 * 109.47527 * 66.55176 * 1 2 3 32 32 H 0.96997 * 120.00629 * 291.89068 * 6 4 2 33 33 H 0.97003 * 119.99873 * 180.02562 * 10 9 7 34 34 H 1.09002 * 111.00235 * 153.58131 * 15 4 2 35 35 H 1.09009 * 111.00316 * 277.38850 * 15 4 2 36 36 H 1.09001 * 110.36258 * 81.84610 * 16 15 4 37 37 H 1.08998 * 110.36790 * 204.17340 * 16 15 4 38 38 H 1.07996 * 126.58535 * 0.03029 * 21 20 18 39 39 H 1.08998 * 109.46852 * 245.27035 * 23 22 21 40 40 H 1.08997 * 109.47021 * 5.27198 * 23 22 21 41 41 H 0.97007 * 119.99556 * 0.02562 * 25 24 23 42 42 H 0.96993 * 120.00127 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7478 -1.2438 5 1 2.3528 -0.0432 -2.0202 6 7 1.0471 -1.6831 -1.7497 7 6 0.4435 -1.4521 -2.9571 8 1 0.7102 -0.5802 -3.5360 9 6 -0.5116 -2.3380 -3.4362 10 7 -1.0921 -2.1157 -4.5965 11 14 -0.9733 -3.8456 -2.4345 12 1 -2.0993 -3.5106 -1.5263 13 1 -1.3841 -4.9409 -3.3493 14 1 0.1967 -4.2837 -1.6317 15 6 3.2875 -1.5133 -0.6946 16 6 2.8156 -1.8804 0.7344 17 7 2.0300 -0.7157 1.1829 18 6 1.8071 -0.3657 2.4652 19 8 1.1406 0.6190 2.7196 20 6 2.3719 -1.1772 3.5602 21 6 2.2254 -0.9290 4.8954 22 7 2.8901 -1.9031 5.5488 23 6 3.0115 -2.0548 7.0009 24 6 2.5444 -3.4299 7.4030 25 7 2.5665 -3.7968 8.6997 26 8 2.1484 -4.2067 6.5598 27 7 3.4475 -2.7397 4.5714 28 7 3.1221 -2.2825 3.4125 29 1 -0.3633 -1.0209 0.1173 30 1 -0.3633 0.6120 0.8256 31 1 -0.3634 0.4089 -0.9428 32 1 0.8075 -2.4660 -1.2297 33 1 -1.7599 -2.7346 -4.9311 34 1 3.4851 -2.4092 -1.2831 35 1 4.1656 -0.8680 -0.6623 36 1 2.1900 -2.7727 0.7097 37 1 3.6731 -2.0353 1.3891 38 1 1.6799 -0.1109 5.3419 39 1 4.0533 -1.9249 7.2938 40 1 2.3980 -1.3031 7.4973 41 1 2.8828 -3.1754 9.3742 42 1 2.2655 -4.6817 8.9586 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987577634.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:42 Heat of formation + Delta-G solvation = 63.564428 kcal Electronic energy + Delta-G solvation = -27366.725381 eV Core-core repulsion = 23385.432467 eV Total energy + Delta-G solvation = -3981.292914 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.154 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.38753 -40.05154 -39.60280 -37.38775 -34.93470 -34.36389 -33.95160 -31.70217 -31.09758 -30.61840 -29.53892 -28.56497 -25.24996 -24.04156 -23.24206 -22.85817 -21.91593 -21.32025 -20.05618 -19.07509 -18.16751 -17.82853 -17.71764 -16.94806 -16.49222 -16.13049 -15.92411 -15.43382 -14.86556 -14.75993 -14.49988 -14.17767 -13.93985 -13.60342 -13.45014 -13.29098 -12.79953 -12.61961 -12.43140 -12.11489 -11.73602 -11.63340 -11.25881 -11.09566 -10.92436 -10.84801 -10.62041 -10.43993 -10.39696 -10.36873 -10.14611 -10.03377 -9.75448 -9.53759 -9.38780 -8.93914 -8.24057 -7.28345 -5.75950 -3.11629 0.92740 1.59467 1.75214 1.87257 2.70904 3.22179 3.41871 3.45102 3.46150 3.50127 3.85411 4.02768 4.13498 4.22928 4.53066 4.61600 4.80249 5.06926 5.11267 5.28124 5.31204 5.49606 5.66908 5.72690 5.82565 5.95366 6.01705 6.09126 6.10780 6.26223 6.39935 6.41413 6.55076 6.59193 6.64289 6.74253 6.97295 7.15321 7.52283 7.78628 7.88307 7.99205 8.39139 8.43037 9.20417 9.93309 10.12561 11.41953 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.018572 B = 0.003124 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.281385 B = 8961.798618 C = 9629.175669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.110 3.890 3 H 0.070 0.930 4 C 0.177 3.823 5 H 0.090 0.910 6 N -0.733 5.733 7 C -0.244 4.244 8 H 0.093 0.907 9 C 0.009 3.991 10 N -0.932 5.932 11 Si 0.878 3.122 12 H -0.284 1.284 13 H -0.291 1.291 14 H -0.276 1.276 15 C -0.154 4.154 16 C 0.102 3.898 17 N -0.590 5.590 18 C 0.612 3.388 19 O -0.546 6.546 20 C -0.086 4.086 21 C 0.089 3.911 22 N -0.361 5.361 23 C 0.105 3.895 24 C 0.503 3.497 25 N -0.851 5.851 26 O -0.506 6.506 27 N -0.039 5.039 28 N -0.200 5.200 29 H 0.053 0.947 30 H 0.046 0.954 31 H 0.075 0.925 32 H 0.363 0.637 33 H 0.259 0.741 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.089 0.911 38 H 0.205 0.795 39 H 0.129 0.871 40 H 0.135 0.865 41 H 0.403 0.597 42 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.782 2.344 29.956 32.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.005 3.995 3 H 0.088 0.912 4 C 0.065 3.935 5 H 0.108 0.892 6 N -0.373 5.373 7 C -0.374 4.374 8 H 0.111 0.889 9 C -0.187 4.187 10 N -0.579 5.579 11 Si 0.709 3.291 12 H -0.211 1.211 13 H -0.218 1.218 14 H -0.202 1.202 15 C -0.194 4.194 16 C -0.021 4.021 17 N -0.322 5.322 18 C 0.398 3.602 19 O -0.424 6.424 20 C -0.224 4.224 21 C -0.066 4.066 22 N -0.146 5.146 23 C -0.021 4.021 24 C 0.284 3.716 25 N -0.417 5.417 26 O -0.378 6.378 27 N -0.019 5.019 28 N -0.074 5.074 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.093 0.907 32 H 0.196 0.804 33 H 0.070 0.930 34 H 0.105 0.895 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.107 0.893 38 H 0.222 0.778 39 H 0.147 0.853 40 H 0.153 0.847 41 H 0.232 0.768 42 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 11.927 1.341 28.950 31.340 hybrid contribution -1.028 -0.508 1.682 2.036 sum 10.899 0.834 30.632 32.524 Atomic orbital electron populations 1.21795 0.93884 1.01948 1.01840 1.22658 0.95949 0.95856 0.84995 0.91182 1.21218 0.87999 0.91830 0.92468 0.89219 1.42708 1.46129 1.26201 1.22217 1.19090 1.15944 1.08200 0.94123 0.88941 1.24628 0.98916 0.98475 0.96683 1.69696 1.30427 1.38353 1.19416 0.86647 0.78582 0.84114 0.79784 1.21080 1.21753 1.20207 1.23359 0.98864 1.02020 0.95172 1.22508 0.95605 0.88033 0.95960 1.48424 1.50877 1.28398 1.04496 1.16341 0.80052 0.83290 0.80562 1.90775 1.40929 1.27412 1.83241 1.21528 1.08380 0.98859 0.93673 1.23274 0.96370 0.94383 0.92580 1.49821 1.37411 1.19972 1.07430 1.21685 1.06129 0.97771 0.76507 1.20374 0.78787 0.89119 0.83315 1.43700 1.69600 1.20662 1.07726 1.90932 1.44331 1.52682 1.49850 1.82124 1.18009 1.12535 0.89216 1.74775 1.09132 1.07313 1.16223 0.92806 0.93498 0.90654 0.80374 0.93047 0.89505 0.90995 0.91699 0.89289 0.77801 0.85323 0.84697 0.76803 0.75859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 8.25 37.16 0.31 -2.44 16 2 C 0.11 2.01 3.44 -66.95 -0.23 1.78 16 3 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 4 C 0.18 3.33 3.57 -66.09 -0.24 3.09 16 5 H 0.09 1.66 7.90 -51.93 -0.41 1.25 16 6 N -0.73 -16.81 3.33 -51.65 -0.17 -16.98 16 7 C -0.24 -6.64 10.23 -15.06 -0.15 -6.79 16 8 H 0.09 2.67 7.95 -52.48 -0.42 2.26 16 9 C 0.01 0.26 5.50 -17.43 -0.10 0.17 16 10 N -0.93 -29.05 13.97 55.49 0.78 -28.28 16 11 Si 0.88 22.50 27.74 -169.99 -4.71 17.79 16 12 H -0.28 -7.35 7.11 56.52 0.40 -6.95 16 13 H -0.29 -7.57 7.11 56.52 0.40 -7.16 16 14 H -0.28 -6.73 6.52 56.52 0.37 -6.37 16 15 C -0.15 -2.44 6.77 -24.58 -0.17 -2.61 16 16 C 0.10 1.66 6.04 -2.50 -0.02 1.64 16 17 N -0.59 -10.27 3.07 -164.20 -0.50 -10.77 16 18 C 0.61 10.53 7.64 -12.47 -0.10 10.43 16 19 O -0.55 -10.28 16.01 5.28 0.08 -10.19 16 20 C -0.09 -1.28 6.84 -83.55 -0.57 -1.85 16 21 C 0.09 0.94 11.27 -16.83 -0.19 0.75 16 22 N -0.36 -3.56 3.41 -62.24 -0.21 -3.77 16 23 C 0.11 0.41 7.02 -5.19 -0.04 0.38 16 24 C 0.50 3.36 8.13 -10.99 -0.09 3.27 16 25 N -0.85 -1.72 8.87 31.22 0.28 -1.44 16 26 O -0.51 -6.70 16.57 5.55 0.09 -6.61 16 27 N -0.04 -0.55 12.89 60.35 0.78 0.23 16 28 N -0.20 -3.12 9.39 32.85 0.31 -2.81 16 29 H 0.05 1.17 7.55 -51.93 -0.39 0.78 16 30 H 0.05 0.92 7.08 -51.93 -0.37 0.55 16 31 H 0.07 1.60 7.96 -51.93 -0.41 1.19 16 32 H 0.36 8.53 5.68 -40.82 -0.23 8.30 16 33 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 34 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 35 H 0.07 0.99 8.14 -51.92 -0.42 0.56 16 36 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.09 1.36 6.14 -51.93 -0.32 1.05 16 38 H 0.21 1.39 8.06 -52.49 -0.42 0.97 16 39 H 0.13 0.12 8.14 -51.93 -0.42 -0.30 16 40 H 0.14 -0.05 8.08 -51.93 -0.42 -0.47 16 41 H 0.40 -0.78 8.83 -40.82 -0.36 -1.14 16 42 H 0.41 0.85 8.93 -40.82 -0.36 0.49 16 LS Contribution 353.85 15.07 5.33 5.33 Total: -1.00 -39.82 353.85 -4.93 -44.75 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -5.40 Total: 4.94 kcal Atomic # 6 Polarization: 9.39 SS G_CDS: -1.57 Total: 7.82 kcal Atomic # 7 Polarization: -65.08 SS G_CDS: 1.25 Total: -63.83 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: 0.18 Total: -16.81 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -4.71 Total: 17.79 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -39.82 -4.93 -44.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987577634.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.312 kcal (2) G-P(sol) polarization free energy of solvation -39.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds