Wall clock time and date at job start Fri Apr 10 2020 18:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.87461 * 2 1 4 4 C 1.54327 * 109.87866 * 238.98735 * 2 1 3 5 5 H 1.08995 * 110.72297 * 100.02622 * 4 2 1 6 6 N 1.46495 * 110.71923 * 336.74687 * 4 2 1 7 7 C 1.36943 * 119.99721 * 111.89941 * 6 4 2 8 8 H 1.08004 * 119.99478 * 359.97438 * 7 6 4 9 9 C 1.38806 * 119.99991 * 180.02562 * 7 6 4 10 10 N 1.31625 * 119.99900 * 179.97438 * 9 7 6 11 11 Si 1.86800 * 120.00254 * 359.97438 * 9 7 6 12 12 H 1.48495 * 109.47052 * 90.00102 * 11 9 7 13 13 H 1.48500 * 109.47125 * 210.00515 * 11 9 7 14 14 H 1.48503 * 109.46818 * 330.00424 * 11 9 7 15 15 C 1.55160 * 102.93727 * 218.38953 * 4 2 1 16 16 C 1.54907 * 101.62052 * 35.48104 * 15 4 2 17 17 N 1.47018 * 109.88140 * 121.17687 * 2 1 3 18 18 C 1.34774 * 125.65135 * 298.40876 * 17 2 1 19 19 O 1.21598 * 120.00027 * 0.02562 * 18 17 2 20 20 C 1.47529 * 120.00274 * 180.02562 * 18 17 2 21 21 C 1.36595 * 125.76874 * 179.72137 * 20 18 17 22 22 N 1.34816 * 106.83356 * 179.89925 * 21 20 18 23 23 C 1.46506 * 126.58994 * 180.10756 * 22 21 20 24 24 C 1.50697 * 109.46917 * 125.26890 * 23 22 21 25 25 N 1.34780 * 120.00118 * 179.97438 * 24 23 22 26 26 O 1.21288 * 120.00457 * 359.97438 * 24 23 22 27 27 N 1.40213 * 106.81405 * 0.35302 * 22 21 20 28 28 N 1.28756 * 108.36484 * 359.77118 * 27 22 21 29 29 H 1.08997 * 109.47079 * 186.55169 * 1 2 3 30 30 H 1.08997 * 109.46744 * 306.54985 * 1 2 3 31 31 H 1.09001 * 109.47527 * 66.55176 * 1 2 3 32 32 H 0.96997 * 120.00629 * 291.89068 * 6 4 2 33 33 H 0.97003 * 119.99873 * 180.02562 * 10 9 7 34 34 H 1.09002 * 111.00235 * 153.58131 * 15 4 2 35 35 H 1.09009 * 111.00316 * 277.38850 * 15 4 2 36 36 H 1.09001 * 110.36258 * 81.84610 * 16 15 4 37 37 H 1.08998 * 110.36790 * 204.17340 * 16 15 4 38 38 H 1.07996 * 126.58535 * 0.03029 * 21 20 18 39 39 H 1.08998 * 109.46852 * 245.27035 * 23 22 21 40 40 H 1.08997 * 109.47021 * 5.27198 * 23 22 21 41 41 H 0.97007 * 119.99556 * 0.02562 * 25 24 23 42 42 H 0.96993 * 120.00127 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7478 -1.2438 5 1 2.3528 -0.0432 -2.0202 6 7 1.0471 -1.6831 -1.7497 7 6 0.4435 -1.4521 -2.9571 8 1 0.7102 -0.5802 -3.5360 9 6 -0.5116 -2.3380 -3.4362 10 7 -1.0921 -2.1157 -4.5965 11 14 -0.9733 -3.8456 -2.4345 12 1 -2.0993 -3.5106 -1.5263 13 1 -1.3841 -4.9409 -3.3493 14 1 0.1967 -4.2837 -1.6317 15 6 3.2875 -1.5133 -0.6946 16 6 2.8156 -1.8804 0.7344 17 7 2.0300 -0.7157 1.1829 18 6 1.8071 -0.3657 2.4652 19 8 1.1406 0.6190 2.7196 20 6 2.3719 -1.1772 3.5602 21 6 2.2254 -0.9290 4.8954 22 7 2.8901 -1.9031 5.5488 23 6 3.0115 -2.0548 7.0009 24 6 2.5444 -3.4299 7.4030 25 7 2.5665 -3.7968 8.6997 26 8 2.1484 -4.2067 6.5598 27 7 3.4475 -2.7397 4.5714 28 7 3.1221 -2.2825 3.4125 29 1 -0.3633 -1.0209 0.1173 30 1 -0.3633 0.6120 0.8256 31 1 -0.3634 0.4089 -0.9428 32 1 0.8075 -2.4660 -1.2297 33 1 -1.7599 -2.7346 -4.9311 34 1 3.4851 -2.4092 -1.2831 35 1 4.1656 -0.8680 -0.6623 36 1 2.1900 -2.7727 0.7097 37 1 3.6731 -2.0353 1.3891 38 1 1.6799 -0.1109 5.3419 39 1 4.0533 -1.9249 7.2938 40 1 2.3980 -1.3031 7.4973 41 1 2.8828 -3.1754 9.3742 42 1 2.2655 -4.6817 8.9586 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987577634.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:41 Heat of formation + Delta-G solvation = 29.424488 kcal Electronic energy + Delta-G solvation = -27368.205800 eV Core-core repulsion = 23385.432467 eV Total energy + Delta-G solvation = -3982.773333 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.154 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.28255 -41.10010 -40.47556 -38.82507 -35.94136 -35.53795 -34.77926 -33.51887 -32.38514 -31.92302 -30.97163 -29.37892 -26.84899 -25.34595 -24.81402 -23.91720 -23.07351 -21.98110 -21.39679 -20.25424 -19.75555 -18.91851 -18.31585 -17.80511 -17.63047 -17.03671 -16.88853 -16.45357 -16.14325 -15.93934 -15.74612 -15.54530 -15.09903 -15.02320 -14.77725 -14.55227 -14.23408 -13.91666 -13.79024 -13.50429 -13.16057 -13.06179 -12.93155 -12.48585 -12.41784 -12.33307 -12.00573 -11.88817 -11.83578 -11.73064 -11.49022 -11.12586 -11.06107 -10.96595 -10.76121 -10.36515 -9.62613 -9.31279 -7.99929 -5.31330 0.11083 0.65289 0.98349 1.36331 1.38528 1.43699 1.44189 1.96037 2.24068 2.35482 2.48024 3.11691 3.31273 3.44190 3.57295 3.67058 3.73197 3.86076 3.95893 4.03246 4.08137 4.26677 4.33832 4.35920 4.48797 4.54650 4.65641 4.79607 4.90963 5.04376 5.12036 5.21270 5.28890 5.32592 5.44807 5.47502 5.79245 5.82015 6.24341 6.34597 6.50945 6.84035 7.08837 7.12532 7.22979 7.85161 8.03163 9.21388 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.018572 B = 0.003124 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.281385 B = 8961.798618 C = 9629.175669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.117 3.883 3 H 0.084 0.916 4 C 0.169 3.831 5 H 0.093 0.907 6 N -0.735 5.735 7 C -0.214 4.214 8 H 0.070 0.930 9 C -0.055 4.055 10 N -0.980 5.980 11 Si 0.936 3.064 12 H -0.289 1.289 13 H -0.296 1.296 14 H -0.257 1.257 15 C -0.139 4.139 16 C 0.109 3.891 17 N -0.596 5.596 18 C 0.611 3.389 19 O -0.568 6.568 20 C -0.124 4.124 21 C 0.117 3.883 22 N -0.346 5.346 23 C 0.095 3.905 24 C 0.498 3.502 25 N -0.825 5.825 26 O -0.583 6.583 27 N -0.070 5.070 28 N -0.225 5.225 29 H 0.032 0.968 30 H 0.048 0.952 31 H 0.057 0.943 32 H 0.362 0.638 33 H 0.256 0.744 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.047 0.953 37 H 0.102 0.898 38 H 0.246 0.754 39 H 0.167 0.833 40 H 0.190 0.810 41 H 0.426 0.574 42 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.524 3.047 33.972 36.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.012 3.988 3 H 0.102 0.898 4 C 0.058 3.942 5 H 0.111 0.889 6 N -0.375 5.375 7 C -0.344 4.344 8 H 0.088 0.912 9 C -0.247 4.247 10 N -0.631 5.631 11 Si 0.765 3.235 12 H -0.216 1.216 13 H -0.223 1.223 14 H -0.182 1.182 15 C -0.179 4.179 16 C -0.014 4.014 17 N -0.327 5.327 18 C 0.399 3.601 19 O -0.447 6.447 20 C -0.263 4.263 21 C -0.040 4.040 22 N -0.131 5.131 23 C -0.028 4.028 24 C 0.281 3.719 25 N -0.391 5.391 26 O -0.462 6.462 27 N -0.050 5.050 28 N -0.100 5.100 29 H 0.051 0.949 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.195 0.805 33 H 0.065 0.935 34 H 0.105 0.895 35 H 0.120 0.880 36 H 0.065 0.935 37 H 0.120 0.880 38 H 0.262 0.738 39 H 0.185 0.815 40 H 0.207 0.793 41 H 0.258 0.742 42 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 13.761 2.055 33.114 35.918 hybrid contribution -1.506 -0.613 0.690 1.766 sum 12.254 1.442 33.804 35.985 Atomic orbital electron populations 1.21653 0.95523 1.00359 1.00840 1.22419 0.94457 0.96585 0.85348 0.89812 1.21449 0.88210 0.91668 0.92843 0.88910 1.42692 1.46941 1.26984 1.20915 1.19071 1.14400 1.06349 0.94630 0.91175 1.25251 0.99967 1.01626 0.97867 1.69841 1.31987 1.39769 1.21543 0.85697 0.78601 0.80891 0.78311 1.21597 1.22319 1.18196 1.23270 0.98213 1.02049 0.94322 1.22462 0.95522 0.87021 0.96375 1.48443 1.51188 1.28557 1.04536 1.16672 0.79459 0.83167 0.80816 1.90748 1.41923 1.28432 1.83614 1.21413 1.10643 0.99619 0.94588 1.23828 0.94437 0.94496 0.91225 1.50118 1.35438 1.18415 1.09135 1.22405 1.09606 0.97480 0.73286 1.20875 0.77709 0.89555 0.83729 1.43557 1.67575 1.21103 1.06886 1.90917 1.48249 1.54978 1.52067 1.82019 1.19339 1.13879 0.89777 1.74708 1.09953 1.07839 1.17456 0.94866 0.93329 0.92430 0.80533 0.93538 0.89539 0.87982 0.93501 0.88012 0.73760 0.81536 0.79293 0.74161 0.75727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.07 8.25 71.98 0.59 -4.47 16 2 C 0.12 4.17 3.44 45.34 0.16 4.32 16 3 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 4 C 0.17 6.17 3.57 46.18 0.16 6.33 16 5 H 0.09 3.35 7.90 -2.39 -0.02 3.33 16 6 N -0.73 -33.60 3.33 -317.33 -1.06 -34.65 16 7 C -0.21 -11.79 10.23 84.03 0.86 -10.93 16 8 H 0.07 4.15 7.95 -2.91 -0.02 4.13 16 9 C -0.06 -3.28 5.50 84.86 0.47 -2.81 16 10 N -0.98 -62.94 13.97 21.65 0.30 -62.63 16 11 Si 0.94 47.33 27.74 68.60 1.90 49.24 16 12 H -0.29 -14.72 7.11 99.48 0.71 -14.01 16 13 H -0.30 -15.15 7.11 99.48 0.71 -14.44 16 14 H -0.26 -12.03 6.52 99.48 0.65 -11.38 16 15 C -0.14 -4.14 6.77 31.99 0.22 -3.93 16 16 C 0.11 3.43 6.04 86.85 0.52 3.95 16 17 N -0.60 -20.11 3.07 -791.67 -2.43 -22.54 16 18 C 0.61 20.29 7.64 86.69 0.66 20.95 16 19 O -0.57 -20.58 16.01 -4.02 -0.06 -20.65 16 20 C -0.12 -3.47 6.84 40.82 0.28 -3.19 16 21 C 0.12 2.10 11.27 83.85 0.95 3.04 16 22 N -0.35 -5.75 3.41 -350.83 -1.20 -6.94 16 23 C 0.10 0.31 7.02 85.63 0.60 0.91 16 24 C 0.50 5.33 8.13 87.66 0.71 6.05 16 25 N -0.83 -0.72 8.87 -173.53 -1.54 -2.26 16 26 O -0.58 -15.15 16.57 -3.05 -0.05 -15.20 16 27 N -0.07 -1.90 12.89 37.02 0.48 -1.42 16 28 N -0.23 -6.84 9.39 -49.99 -0.47 -7.30 16 29 H 0.03 1.44 7.55 -2.39 -0.02 1.42 16 30 H 0.05 1.91 7.08 -2.39 -0.02 1.89 16 31 H 0.06 2.49 7.96 -2.39 -0.02 2.47 16 32 H 0.36 16.83 5.68 -92.71 -0.53 16.31 16 33 H 0.26 15.82 8.31 -92.71 -0.77 15.04 16 34 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 35 H 0.10 2.48 8.14 -2.38 -0.02 2.46 16 36 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.10 3.00 6.14 -2.39 -0.01 2.98 16 38 H 0.25 2.11 8.06 -2.91 -0.02 2.09 16 39 H 0.17 -0.61 8.14 -2.39 -0.02 -0.63 16 40 H 0.19 -1.41 8.08 -2.39 -0.02 -1.43 16 41 H 0.43 -3.48 8.83 -92.70 -0.82 -4.30 16 42 H 0.41 0.78 8.93 -92.71 -0.83 -0.05 16 Total: -1.00 -92.19 353.85 0.93 -91.26 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -1.13 Total: 12.88 kcal Atomic # 6 Polarization: 14.05 SS G_CDS: 6.18 Total: 20.23 kcal Atomic # 7 Polarization: -131.85 SS G_CDS: -5.91 Total: -137.76 kcal Atomic # 8 Polarization: -35.73 SS G_CDS: -0.11 Total: -35.85 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 1.90 Total: 49.24 kcal Total: -92.19 0.93 -91.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987577634.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.685 kcal (2) G-P(sol) polarization free energy of solvation -92.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds