Wall clock time and date at job start Fri Apr 10 2020 18:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86805 * 120.00039 * 2 1 4 4 H 1.48506 * 109.46921 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47171 * 299.99915 * 3 2 1 6 6 H 1.48500 * 109.47143 * 59.99974 * 3 2 1 7 7 C 1.38808 * 119.99762 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99648 * 175.76740 * 7 2 1 9 9 N 1.36929 * 120.00464 * 355.77019 * 7 2 1 10 10 C 1.43466 * 118.94514 * 214.50502 * 9 7 2 11 11 C 1.53500 * 107.88986 * 273.55694 * 10 9 7 12 12 C 1.47140 * 112.03249 * 281.58501 * 11 10 9 13 13 N 1.48206 * 110.19932 * 58.36272 * 12 11 10 14 14 C 1.34773 * 119.97123 * 102.58836 * 13 12 11 15 15 O 1.21593 * 119.99997 * 356.40217 * 14 13 12 16 16 C 1.47531 * 119.99971 * 176.40839 * 14 13 12 17 17 C 1.36592 * 125.76535 * 186.60309 * 16 14 13 18 18 N 1.34820 * 106.83648 * 179.97438 * 17 16 14 19 19 C 1.46498 * 126.59675 * 179.97438 * 18 17 16 20 20 C 1.50697 * 109.47282 * 124.99385 * 19 18 17 21 21 N 1.34785 * 119.99703 * 180.02562 * 20 19 18 22 22 O 1.21274 * 120.00412 * 359.97438 * 20 19 18 23 23 N 1.40207 * 106.80931 * 359.97438 * 18 17 16 24 24 N 1.28762 * 108.36655 * 359.75279 * 23 18 17 25 25 C 1.43623 * 120.06092 * 282.55938 * 13 12 11 26 26 C 1.48861 * 118.93660 * 34.47955 * 9 7 2 27 27 H 0.97004 * 119.99513 * 359.97438 * 1 2 3 28 28 H 1.09007 * 109.76165 * 33.22498 * 10 9 7 29 29 H 1.09001 * 109.76673 * 153.93683 * 10 9 7 30 30 H 1.09002 * 108.79035 * 161.00032 * 11 10 9 31 31 H 1.09001 * 109.03470 * 42.33517 * 11 10 9 32 32 H 1.09000 * 109.32144 * 298.17835 * 12 11 10 33 33 H 1.09008 * 109.32129 * 178.54199 * 12 11 10 34 34 H 1.07999 * 126.58689 * 359.97438 * 17 16 14 35 35 H 1.08996 * 109.46888 * 244.99736 * 19 18 17 36 36 H 1.09006 * 109.47021 * 4.99579 * 19 18 17 37 37 H 0.97001 * 119.99957 * 0.02562 * 21 20 19 38 38 H 0.97001 * 119.99337 * 180.02562 * 21 20 19 39 39 H 1.08997 * 108.87747 * 211.47004 * 25 13 12 40 40 H 1.08996 * 108.87508 * 329.90455 * 25 13 12 41 41 H 1.09000 * 109.48195 * 20.66717 * 26 9 7 42 42 H 1.08996 * 109.48859 * 260.63396 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0880 -1.2034 -0.0685 9 7 1.3284 -2.3864 0.0885 10 6 1.9229 -3.4783 0.8045 11 6 2.8282 -4.2441 -0.1703 12 6 2.0584 -5.1272 -1.0606 13 7 1.0707 -4.3386 -1.8347 14 6 1.3141 -4.0351 -3.1250 15 8 2.3716 -4.3513 -3.6350 16 6 0.2974 -3.3190 -3.9188 17 6 0.3642 -3.0651 -5.2592 18 7 -0.7584 -2.3939 -5.5860 19 6 -1.1289 -1.9074 -6.9173 20 6 -2.4872 -2.4443 -7.2883 21 7 -3.0355 -2.1266 -8.4779 22 8 -3.0866 -3.1629 -6.5169 23 7 -1.5031 -2.2509 -4.4067 24 7 -0.8542 -2.8121 -3.4465 25 6 -0.1458 -3.8980 -1.2112 26 6 -0.0061 -2.4991 -0.5613 27 1 -0.4849 0.8401 0.0004 28 1 2.5148 -3.0952 1.6358 29 1 1.1431 -4.1400 1.1815 30 1 3.5328 -4.8457 0.4038 31 1 3.3852 -3.5284 -0.7751 32 1 1.5354 -5.8742 -0.4635 33 1 2.7394 -5.6279 -1.7489 34 1 1.1630 -3.3478 -5.9289 35 1 -1.1582 -0.8178 -6.9107 36 1 -0.3927 -2.2467 -7.6460 37 1 -2.5556 -1.5527 -9.0953 38 1 -3.9100 -2.4719 -8.7165 39 1 -0.9339 -3.8604 -1.9631 40 1 -0.4286 -4.6172 -0.4425 41 1 -0.1031 -1.7307 -1.3283 42 1 -0.7874 -2.3664 0.1871 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989739819.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:53 Heat of formation + Delta-G solvation = 82.795836 kcal Electronic energy + Delta-G solvation = -28408.924803 eV Core-core repulsion = 24428.465825 eV Total energy + Delta-G solvation = -3980.458978 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.154 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.99777 -39.80309 -39.19113 -36.75753 -34.63280 -34.15682 -33.95954 -32.51282 -30.82300 -30.48853 -28.59744 -27.35138 -25.41846 -23.53279 -23.34281 -22.81213 -21.33907 -20.99626 -19.57528 -19.08323 -17.96718 -17.49649 -16.90543 -16.36622 -16.02333 -15.96178 -15.57001 -15.27571 -14.76887 -14.50044 -14.16008 -13.99051 -13.86279 -13.44423 -13.21084 -12.89537 -12.81409 -12.30401 -12.07358 -11.88269 -11.60968 -11.30252 -10.82642 -10.81972 -10.76235 -10.43826 -10.32427 -10.17913 -10.09515 -10.03522 -9.98748 -9.63602 -9.51242 -9.31664 -8.95006 -8.30867 -7.83337 -6.37762 -5.64701 -3.15719 1.33832 1.97451 2.11432 2.20122 2.97720 3.42108 3.49519 3.52110 3.57311 3.84462 4.15550 4.29833 4.51614 4.56751 4.59598 4.92852 5.21042 5.48081 5.49092 5.60329 5.72108 5.88412 5.94274 6.00397 6.09915 6.25270 6.37742 6.41054 6.48512 6.63094 6.71282 6.77867 6.87540 6.98094 7.12777 7.24001 7.69618 7.75137 7.88859 7.96050 8.15665 8.32470 8.67843 8.74699 9.40256 10.04688 10.54945 11.41548 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012649 B = 0.004571 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.161377 B = 6124.247808 C = 7411.188465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.012 3.988 3 Si 0.895 3.105 4 H -0.278 1.278 5 H -0.293 1.293 6 H -0.289 1.289 7 C -0.255 4.255 8 H 0.059 0.941 9 N -0.594 5.594 10 C 0.163 3.837 11 C -0.170 4.170 12 C 0.131 3.869 13 N -0.565 5.565 14 C 0.605 3.395 15 O -0.561 6.561 16 C -0.082 4.082 17 C 0.082 3.918 18 N -0.364 5.364 19 C 0.106 3.894 20 C 0.504 3.496 21 N -0.852 5.852 22 O -0.506 6.506 23 N -0.039 5.039 24 N -0.181 5.181 25 C 0.063 3.937 26 C 0.173 3.827 27 H 0.252 0.748 28 H 0.044 0.956 29 H 0.032 0.968 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.201 0.799 35 H 0.128 0.872 36 H 0.133 0.867 37 H 0.403 0.597 38 H 0.408 0.592 39 H 0.101 0.899 40 H 0.051 0.949 41 H 0.088 0.912 42 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.054 -6.052 -17.486 18.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.186 4.186 3 Si 0.726 3.274 4 H -0.203 1.203 5 H -0.220 1.220 6 H -0.216 1.216 7 C -0.385 4.385 8 H 0.077 0.923 9 N -0.316 5.316 10 C 0.034 3.966 11 C -0.211 4.211 12 C 0.009 3.991 13 N -0.294 5.294 14 C 0.391 3.609 15 O -0.441 6.441 16 C -0.219 4.219 17 C -0.073 4.073 18 N -0.149 5.149 19 C -0.021 4.021 20 C 0.286 3.714 21 N -0.419 5.419 22 O -0.378 6.378 23 N -0.018 5.018 24 N -0.056 5.056 25 C -0.063 4.063 26 C 0.048 3.952 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.051 0.949 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.218 0.782 35 H 0.146 0.854 36 H 0.150 0.850 37 H 0.231 0.769 38 H 0.239 0.761 39 H 0.118 0.882 40 H 0.069 0.931 41 H 0.106 0.894 42 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -4.181 -6.000 -16.478 18.028 hybrid contribution 1.172 1.003 -1.032 1.856 sum -3.009 -4.996 -17.510 18.456 Atomic orbital electron populations 1.69991 1.05098 1.25023 1.54356 1.25271 0.95432 0.97944 0.99984 0.86322 0.79505 0.84514 0.77109 1.20342 1.21984 1.21567 1.19125 0.90669 0.83612 1.45094 0.92303 1.43699 1.18901 1.09938 1.59091 1.20242 0.94113 0.89866 0.92388 1.21834 0.99852 0.99637 0.99772 1.20599 0.91305 0.93051 0.94107 1.47194 1.21028 1.51831 1.09300 1.16722 0.84531 0.78062 0.81573 1.90710 1.25159 1.56310 1.71874 1.21441 0.97417 1.10587 0.92463 1.23159 0.91307 0.95473 0.97328 1.49809 1.15510 1.40319 1.09285 1.21626 0.96615 1.02444 0.81368 1.20419 0.87737 0.81205 0.82055 1.43708 1.24085 1.54988 1.19080 1.90900 1.62293 1.35411 1.49243 1.82183 1.15309 1.19586 0.84763 1.74845 1.03605 1.06004 1.21108 1.22739 0.85821 0.99417 0.98275 1.21912 0.86007 0.91454 0.95841 0.93783 0.93763 0.94937 0.92767 0.91394 0.91931 0.90511 0.78223 0.85449 0.84957 0.76866 0.76059 0.88178 0.93069 0.89388 0.94654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.80 10.61 55.49 0.59 -26.21 16 2 C 0.01 0.36 5.30 -17.43 -0.09 0.27 16 3 Si 0.90 22.54 29.56 -169.99 -5.02 17.52 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 6 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 7 C -0.25 -7.26 9.18 -15.06 -0.14 -7.39 16 8 H 0.06 1.69 7.83 -52.48 -0.41 1.28 16 9 N -0.59 -15.34 2.53 -172.18 -0.44 -15.77 16 10 C 0.16 3.52 5.63 -5.39 -0.03 3.49 16 11 C -0.17 -3.26 5.61 -29.29 -0.16 -3.43 16 12 C 0.13 2.35 5.69 -5.92 -0.03 2.32 16 13 N -0.56 -11.44 2.45 -177.89 -0.44 -11.88 16 14 C 0.60 12.55 7.66 -12.47 -0.10 12.46 16 15 O -0.56 -12.18 16.33 5.28 0.09 -12.09 16 16 C -0.08 -1.56 6.68 -83.55 -0.56 -2.12 16 17 C 0.08 1.19 11.28 -16.83 -0.19 1.00 16 18 N -0.36 -5.01 3.41 -62.24 -0.21 -5.22 16 19 C 0.11 0.78 7.02 -5.20 -0.04 0.74 16 20 C 0.50 4.58 8.13 -10.98 -0.09 4.49 16 21 N -0.85 -3.49 8.87 31.22 0.28 -3.21 16 22 O -0.51 -7.69 16.57 5.56 0.09 -7.60 16 23 N -0.04 -0.72 12.89 60.35 0.78 0.05 16 24 N -0.18 -3.72 7.83 32.85 0.26 -3.46 16 25 C 0.06 1.31 4.82 -4.58 -0.02 1.29 16 26 C 0.17 4.34 4.99 -1.75 -0.01 4.33 16 27 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 28 H 0.04 0.97 8.02 -51.92 -0.42 0.55 16 29 H 0.03 0.65 7.59 -51.93 -0.39 0.26 16 30 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.07 1.53 7.90 -51.93 -0.41 1.12 16 32 H 0.06 0.97 8.05 -51.93 -0.42 0.55 16 33 H 0.08 1.35 7.16 -51.92 -0.37 0.98 16 34 H 0.20 2.06 8.06 -52.49 -0.42 1.63 16 35 H 0.13 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.13 0.35 8.08 -51.93 -0.42 -0.07 16 37 H 0.40 0.11 8.83 -40.82 -0.36 -0.25 16 38 H 0.41 1.54 8.93 -40.82 -0.36 1.18 16 39 H 0.10 2.08 4.83 -51.96 -0.25 1.83 16 40 H 0.05 0.96 7.73 -51.93 -0.40 0.56 16 41 H 0.09 2.48 5.81 -51.93 -0.30 2.18 16 42 H 0.04 0.95 7.95 -51.93 -0.41 0.54 16 LS Contribution 345.75 15.07 5.21 5.21 Total: -1.00 -39.99 345.75 -5.61 -45.60 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -5.34 Total: -0.38 kcal Atomic # 6 Polarization: 18.89 SS G_CDS: -1.46 Total: 17.44 kcal Atomic # 7 Polarization: -66.52 SS G_CDS: 0.82 Total: -65.70 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: 0.18 Total: -19.69 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -39.99 -5.61 -45.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989739819.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.400 kcal (2) G-P(sol) polarization free energy of solvation -39.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds