Wall clock time and date at job start Fri Apr 10 2020 18:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86805 * 120.00039 * 2 1 4 4 H 1.48506 * 109.46921 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47171 * 299.99915 * 3 2 1 6 6 H 1.48500 * 109.47143 * 59.99974 * 3 2 1 7 7 C 1.38808 * 119.99762 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99648 * 175.76740 * 7 2 1 9 9 N 1.36929 * 120.00464 * 355.77019 * 7 2 1 10 10 C 1.43466 * 118.94514 * 214.50502 * 9 7 2 11 11 C 1.53500 * 107.88986 * 273.55694 * 10 9 7 12 12 C 1.47140 * 112.03249 * 281.58501 * 11 10 9 13 13 N 1.48206 * 110.19932 * 58.36272 * 12 11 10 14 14 C 1.34773 * 119.97123 * 102.58836 * 13 12 11 15 15 O 1.21593 * 119.99997 * 356.40217 * 14 13 12 16 16 C 1.47531 * 119.99971 * 176.40839 * 14 13 12 17 17 C 1.36592 * 125.76535 * 186.60309 * 16 14 13 18 18 N 1.34820 * 106.83648 * 179.97438 * 17 16 14 19 19 C 1.46498 * 126.59675 * 179.97438 * 18 17 16 20 20 C 1.50697 * 109.47282 * 124.99385 * 19 18 17 21 21 N 1.34785 * 119.99703 * 180.02562 * 20 19 18 22 22 O 1.21274 * 120.00412 * 359.97438 * 20 19 18 23 23 N 1.40207 * 106.80931 * 359.97438 * 18 17 16 24 24 N 1.28762 * 108.36655 * 359.75279 * 23 18 17 25 25 C 1.43623 * 120.06092 * 282.55938 * 13 12 11 26 26 C 1.48861 * 118.93660 * 34.47955 * 9 7 2 27 27 H 0.97004 * 119.99513 * 359.97438 * 1 2 3 28 28 H 1.09007 * 109.76165 * 33.22498 * 10 9 7 29 29 H 1.09001 * 109.76673 * 153.93683 * 10 9 7 30 30 H 1.09002 * 108.79035 * 161.00032 * 11 10 9 31 31 H 1.09001 * 109.03470 * 42.33517 * 11 10 9 32 32 H 1.09000 * 109.32144 * 298.17835 * 12 11 10 33 33 H 1.09008 * 109.32129 * 178.54199 * 12 11 10 34 34 H 1.07999 * 126.58689 * 359.97438 * 17 16 14 35 35 H 1.08996 * 109.46888 * 244.99736 * 19 18 17 36 36 H 1.09006 * 109.47021 * 4.99579 * 19 18 17 37 37 H 0.97001 * 119.99957 * 0.02562 * 21 20 19 38 38 H 0.97001 * 119.99337 * 180.02562 * 21 20 19 39 39 H 1.08997 * 108.87747 * 211.47004 * 25 13 12 40 40 H 1.08996 * 108.87508 * 329.90455 * 25 13 12 41 41 H 1.09000 * 109.48195 * 20.66717 * 26 9 7 42 42 H 1.08996 * 109.48859 * 260.63396 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0880 -1.2034 -0.0685 9 7 1.3284 -2.3864 0.0885 10 6 1.9229 -3.4783 0.8045 11 6 2.8282 -4.2441 -0.1703 12 6 2.0584 -5.1272 -1.0606 13 7 1.0707 -4.3386 -1.8347 14 6 1.3141 -4.0351 -3.1250 15 8 2.3716 -4.3513 -3.6350 16 6 0.2974 -3.3190 -3.9188 17 6 0.3642 -3.0651 -5.2592 18 7 -0.7584 -2.3939 -5.5860 19 6 -1.1289 -1.9074 -6.9173 20 6 -2.4872 -2.4443 -7.2883 21 7 -3.0355 -2.1266 -8.4779 22 8 -3.0866 -3.1629 -6.5169 23 7 -1.5031 -2.2509 -4.4067 24 7 -0.8542 -2.8121 -3.4465 25 6 -0.1458 -3.8980 -1.2112 26 6 -0.0061 -2.4991 -0.5613 27 1 -0.4849 0.8401 0.0004 28 1 2.5148 -3.0952 1.6358 29 1 1.1431 -4.1400 1.1815 30 1 3.5328 -4.8457 0.4038 31 1 3.3852 -3.5284 -0.7751 32 1 1.5354 -5.8742 -0.4635 33 1 2.7394 -5.6279 -1.7489 34 1 1.1630 -3.3478 -5.9289 35 1 -1.1582 -0.8178 -6.9107 36 1 -0.3927 -2.2467 -7.6460 37 1 -2.5556 -1.5527 -9.0953 38 1 -3.9100 -2.4719 -8.7165 39 1 -0.9339 -3.8604 -1.9631 40 1 -0.4286 -4.6172 -0.4425 41 1 -0.1031 -1.7307 -1.3283 42 1 -0.7874 -2.3664 0.1871 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989739819.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:52 Heat of formation + Delta-G solvation = 49.513574 kcal Electronic energy + Delta-G solvation = -28410.368030 eV Core-core repulsion = 24428.465825 eV Total energy + Delta-G solvation = -3981.902205 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.154 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.22549 -40.91729 -40.39318 -38.48458 -35.99467 -35.55055 -34.76690 -34.16831 -32.74811 -31.81555 -29.55475 -29.15546 -27.16313 -25.43883 -24.83790 -23.92764 -22.74541 -21.89044 -21.43072 -20.34722 -19.02722 -18.49167 -18.23932 -17.71940 -17.53810 -17.11207 -16.76464 -16.70006 -16.19595 -15.82920 -15.63634 -15.57510 -15.27715 -14.80058 -14.68959 -14.46219 -13.98191 -13.91632 -13.67353 -13.51866 -13.16345 -12.90523 -12.81055 -12.53117 -12.39368 -12.03352 -11.87059 -11.83265 -11.65387 -11.41424 -11.37377 -11.00815 -10.90836 -10.73322 -10.46608 -10.25650 -9.45536 -8.45503 -7.80711 -5.35002 0.19636 0.76917 1.06991 1.40483 1.42215 1.46412 1.52649 2.11821 2.32165 2.42463 2.50818 3.24867 3.33406 3.51020 3.72581 3.86997 3.90320 4.03444 4.09077 4.13523 4.30163 4.38724 4.42413 4.57148 4.60008 4.73649 4.84799 4.96775 5.10115 5.26194 5.30549 5.41296 5.43407 5.54803 5.66947 5.82510 5.87861 5.94093 6.36453 6.50610 6.51404 6.97702 7.23594 7.25197 7.25287 8.00746 8.44271 9.22208 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012649 B = 0.004571 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.161377 B = 6124.247808 C = 7411.188465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.039 4.039 3 Si 0.957 3.043 4 H -0.270 1.270 5 H -0.294 1.294 6 H -0.287 1.287 7 C -0.263 4.263 8 H 0.051 0.949 9 N -0.609 5.609 10 C 0.156 3.844 11 C -0.153 4.153 12 C 0.126 3.874 13 N -0.572 5.572 14 C 0.599 3.401 15 O -0.577 6.577 16 C -0.126 4.126 17 C 0.110 3.890 18 N -0.347 5.347 19 C 0.092 3.908 20 C 0.502 3.498 21 N -0.824 5.824 22 O -0.578 6.578 23 N -0.078 5.078 24 N -0.216 5.216 25 C 0.081 3.919 26 C 0.187 3.813 27 H 0.247 0.753 28 H 0.038 0.962 29 H 0.051 0.949 30 H 0.091 0.909 31 H 0.029 0.971 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.247 0.753 35 H 0.157 0.843 36 H 0.192 0.808 37 H 0.425 0.575 38 H 0.412 0.588 39 H 0.101 0.899 40 H 0.073 0.927 41 H 0.053 0.947 42 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.770 -6.499 -19.707 20.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.235 4.235 3 Si 0.786 3.214 4 H -0.195 1.195 5 H -0.221 1.221 6 H -0.213 1.213 7 C -0.394 4.394 8 H 0.069 0.931 9 N -0.332 5.332 10 C 0.029 3.971 11 C -0.194 4.194 12 C 0.006 3.994 13 N -0.300 5.300 14 C 0.386 3.614 15 O -0.458 6.458 16 C -0.265 4.265 17 C -0.047 4.047 18 N -0.132 5.132 19 C -0.031 4.031 20 C 0.285 3.715 21 N -0.391 5.391 22 O -0.456 6.456 23 N -0.058 5.058 24 N -0.089 5.089 25 C -0.045 4.045 26 C 0.061 3.939 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.109 0.891 31 H 0.048 0.952 32 H 0.114 0.886 33 H 0.102 0.898 34 H 0.263 0.737 35 H 0.174 0.826 36 H 0.209 0.791 37 H 0.257 0.743 38 H 0.244 0.756 39 H 0.118 0.882 40 H 0.091 0.909 41 H 0.071 0.929 42 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges -2.899 -6.422 -18.767 20.046 hybrid contribution 0.784 1.165 -0.518 1.496 sum -2.115 -5.257 -19.285 20.100 Atomic orbital electron populations 1.70186 1.06313 1.25201 1.55507 1.25940 0.96203 1.00964 1.00367 0.85358 0.78639 0.80627 0.76795 1.19474 1.22109 1.21341 1.19310 0.90535 0.85027 1.44514 0.93118 1.43910 1.18887 1.10372 1.60018 1.20433 0.94802 0.89247 0.92584 1.21616 0.99647 0.99084 0.99078 1.20798 0.91344 0.93098 0.94195 1.47318 1.21165 1.51973 1.09573 1.17043 0.84702 0.77766 0.81849 1.90673 1.25750 1.57187 1.72229 1.21608 0.97626 1.12817 0.94428 1.23787 0.91714 0.92931 0.96242 1.50122 1.14409 1.38517 1.10195 1.22374 0.97261 1.04147 0.79302 1.20734 0.88064 0.80307 0.82415 1.43513 1.24010 1.53785 1.17744 1.90891 1.64145 1.38967 1.51648 1.82050 1.16525 1.20815 0.86377 1.74772 1.04513 1.07039 1.22610 1.22380 0.86422 0.97155 0.98586 1.21539 0.84994 0.93232 0.94097 0.94383 0.94328 0.93050 0.89066 0.95179 0.88632 0.89828 0.73710 0.82605 0.79109 0.74253 0.75589 0.88163 0.90877 0.92888 0.97659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.13 10.61 21.65 0.23 -56.90 16 2 C -0.04 -2.28 5.30 84.86 0.45 -1.83 16 3 Si 0.96 47.24 29.56 68.60 2.03 49.27 16 4 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 5 H -0.29 -14.45 7.11 99.48 0.71 -13.74 16 6 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 7 C -0.26 -15.31 9.18 84.03 0.77 -14.54 16 8 H 0.05 2.98 7.83 -2.91 -0.02 2.96 16 9 N -0.61 -32.04 2.53 -698.64 -1.77 -33.81 16 10 C 0.16 6.69 5.63 87.11 0.49 7.18 16 11 C -0.15 -5.68 5.61 28.94 0.16 -5.52 16 12 C 0.13 4.29 5.69 84.23 0.48 4.77 16 13 N -0.57 -22.94 2.45 -834.99 -2.05 -24.99 16 14 C 0.60 24.75 7.66 86.69 0.66 25.41 16 15 O -0.58 -24.58 16.33 -4.01 -0.07 -24.65 16 16 C -0.13 -4.82 6.68 40.82 0.27 -4.55 16 17 C 0.11 2.97 11.28 83.85 0.95 3.92 16 18 N -0.35 -9.02 3.41 -350.84 -1.20 -10.22 16 19 C 0.09 1.03 7.02 85.63 0.60 1.64 16 20 C 0.50 8.15 8.13 87.65 0.71 8.86 16 21 N -0.82 -4.46 8.87 -173.53 -1.54 -6.00 16 22 O -0.58 -17.66 16.57 -3.01 -0.05 -17.71 16 23 N -0.08 -2.99 12.89 37.02 0.48 -2.51 16 24 N -0.22 -9.15 7.83 -50.00 -0.39 -9.54 16 25 C 0.08 3.38 4.82 87.55 0.42 3.81 16 26 C 0.19 9.72 4.99 86.56 0.43 10.15 16 27 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 28 H 0.04 1.67 8.02 -2.38 -0.02 1.65 16 29 H 0.05 1.99 7.59 -2.39 -0.02 1.98 16 30 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 31 H 0.03 1.33 7.90 -2.39 -0.02 1.31 16 32 H 0.10 2.64 8.05 -2.39 -0.02 2.62 16 33 H 0.08 2.77 7.16 -2.38 -0.02 2.75 16 34 H 0.25 4.04 8.06 -2.91 -0.02 4.02 16 35 H 0.16 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.19 -0.12 8.08 -2.38 -0.02 -0.14 16 37 H 0.42 -1.43 8.83 -92.71 -0.82 -2.25 16 38 H 0.41 2.26 8.93 -92.71 -0.83 1.43 16 39 H 0.10 4.32 4.83 -2.42 -0.01 4.30 16 40 H 0.07 2.70 7.73 -2.39 -0.02 2.68 16 41 H 0.05 3.13 5.81 -2.39 -0.01 3.12 16 42 H 0.01 0.31 7.95 -2.39 -0.02 0.29 16 Total: -1.00 -94.03 345.75 1.53 -92.51 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -0.56 Total: 5.28 kcal Atomic # 6 Polarization: 32.89 SS G_CDS: 6.41 Total: 39.29 kcal Atomic # 7 Polarization: -137.75 SS G_CDS: -6.24 Total: -143.98 kcal Atomic # 8 Polarization: -42.25 SS G_CDS: -0.12 Total: -42.36 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 2.03 Total: 49.27 kcal Total: -94.03 1.53 -92.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989739819.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.020 kcal (2) G-P(sol) polarization free energy of solvation -94.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds