Wall clock time and date at job start Fri Apr 10 2020 18:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.99401 * 2 1 4 4 C 1.54316 * 109.88437 * 121.09726 * 2 1 3 5 5 C 1.55154 * 102.94339 * 97.22532 * 4 2 1 6 6 H 1.08997 * 111.00403 * 277.39148 * 5 4 2 7 7 N 1.46506 * 111.00346 * 153.57490 * 5 4 2 8 8 C 1.36938 * 119.99629 * 155.00077 * 7 5 4 9 9 H 1.07998 * 120.00011 * 0.02562 * 8 7 5 10 10 C 1.38815 * 119.99969 * 180.02562 * 8 7 5 11 11 N 1.31614 * 119.99920 * 180.02562 * 10 8 7 12 12 Si 1.86797 * 119.99645 * 359.97438 * 10 8 7 13 13 H 1.48498 * 109.47073 * 90.00345 * 12 10 8 14 14 H 1.48505 * 109.47283 * 209.99991 * 12 10 8 15 15 H 1.48493 * 109.47464 * 330.00083 * 12 10 8 16 16 C 1.54910 * 101.58203 * 35.50433 * 5 4 2 17 17 N 1.47023 * 109.88335 * 238.91181 * 2 1 3 18 18 C 1.34768 * 125.65460 * 59.56241 * 17 2 1 19 19 O 1.21600 * 119.99831 * 0.02562 * 18 17 2 20 20 C 1.47520 * 120.00324 * 180.02562 * 18 17 2 21 21 C 1.36600 * 125.77148 * 179.71693 * 20 18 17 22 22 N 1.34816 * 106.83952 * 179.89673 * 21 20 18 23 23 C 1.46496 * 126.59280 * 180.13227 * 22 21 20 24 24 C 1.50700 * 109.47017 * 125.24765 * 23 22 21 25 25 N 1.34776 * 120.00044 * 179.97438 * 24 23 22 26 26 O 1.21283 * 120.00097 * 0.02562 * 24 23 22 27 27 N 1.40207 * 106.81030 * 0.35831 * 22 21 20 28 28 N 1.28762 * 108.36897 * 359.77287 * 27 22 21 29 29 H 1.08999 * 109.47140 * 298.90087 * 1 2 3 30 30 H 1.09008 * 109.47023 * 58.90446 * 1 2 3 31 31 H 1.08998 * 109.46705 * 178.89885 * 1 2 3 32 32 H 1.09002 * 110.71968 * 338.85939 * 4 2 1 33 33 H 1.09005 * 110.72064 * 215.59126 * 4 2 1 34 34 H 0.96995 * 119.99814 * 335.00058 * 7 5 4 35 35 H 0.97000 * 119.99611 * 180.02562 * 11 10 8 36 36 H 1.09006 * 110.36732 * 81.82495 * 16 5 4 37 37 H 1.08995 * 110.37006 * 204.15562 * 16 5 4 38 38 H 1.08002 * 126.57829 * 0.03941 * 21 20 18 39 39 H 1.09006 * 109.47394 * 245.24453 * 23 22 21 40 40 H 1.08997 * 109.47506 * 5.24450 * 23 22 21 41 41 H 0.97003 * 120.00126 * 0.02562 * 25 24 23 42 42 H 0.96997 * 120.00342 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0549 -0.7495 1.2426 5 6 2.3519 -2.1694 0.6923 6 1 1.4454 -2.7738 0.6609 7 7 3.3938 -2.8311 1.4815 8 6 3.4570 -4.1985 1.5226 9 1 2.7390 -4.7889 0.9729 10 6 4.4438 -4.8255 2.2708 11 7 4.5048 -6.1397 2.3099 12 14 5.6861 -3.8041 3.2210 13 1 5.1674 -3.5386 4.5869 14 1 6.9692 -4.5460 3.3144 15 1 5.9094 -2.5157 2.5172 16 6 2.8569 -1.8497 -0.7369 17 7 2.0300 -0.7139 -1.1840 18 6 1.7755 -0.3842 -2.4657 19 8 1.0776 0.5789 -2.7187 20 6 2.3436 -1.1918 -3.5618 21 6 2.1585 -0.9687 -4.8967 22 7 2.8458 -1.9259 -5.5516 23 6 2.9452 -2.0909 -7.0039 24 6 4.3967 -2.1213 -7.4078 25 7 4.7324 -2.2665 -8.7050 26 8 5.2629 -2.0160 -6.5654 27 7 3.4428 -2.7362 -4.5755 28 7 3.1259 -2.2748 -3.4159 29 1 -0.3633 0.4967 0.8997 30 1 -0.3633 0.5308 -0.8801 31 1 -0.3633 -1.0275 -0.0197 32 1 1.2918 -0.7890 2.0200 33 1 2.9657 -0.2831 1.6182 34 1 4.0389 -2.3007 1.9749 35 1 5.1942 -6.5778 2.8331 36 1 3.9092 -1.5665 -0.7129 37 1 2.7089 -2.7078 -1.3924 38 1 1.5755 -0.1761 -5.3421 39 1 2.4669 -3.0255 -7.2970 40 1 2.4476 -1.2572 -7.4992 41 1 4.0396 -2.3511 -9.3787 42 1 5.6666 -2.2857 -8.9650 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989832010.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:37 Heat of formation + Delta-G solvation = 60.678753 kcal Electronic energy + Delta-G solvation = -27174.710174 eV Core-core repulsion = 23193.292127 eV Total energy + Delta-G solvation = -3981.418047 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.154 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.26664 -39.98083 -39.60210 -37.34842 -34.80175 -34.26463 -34.19898 -31.88060 -31.39443 -30.68607 -28.81819 -28.61514 -25.44614 -24.25105 -23.12810 -23.08150 -21.49658 -21.11771 -20.16537 -19.27186 -18.19865 -17.70927 -17.61455 -17.03032 -16.38150 -16.07039 -15.71563 -15.30940 -15.22822 -14.61496 -14.46595 -14.13476 -13.90655 -13.59314 -13.32438 -13.22127 -13.04132 -12.64972 -12.40564 -12.07264 -11.89009 -11.85880 -11.46780 -11.30415 -10.97982 -10.93498 -10.56228 -10.51538 -10.30388 -10.27645 -10.26125 -9.92356 -9.87326 -9.54215 -9.29094 -8.92137 -8.29696 -7.27038 -5.73054 -3.10054 1.03658 1.71438 1.85900 1.97847 2.81687 3.16981 3.42500 3.44972 3.45329 3.50295 3.93924 4.12535 4.23401 4.34937 4.54981 4.63201 4.84353 5.04727 5.18278 5.19981 5.23410 5.42038 5.61286 5.65786 5.70268 5.87617 5.93104 5.97631 6.06384 6.20409 6.21986 6.27256 6.32605 6.49775 6.64267 6.65016 6.80687 6.88593 7.62708 7.77640 7.97523 8.02777 8.35485 8.45685 9.22610 9.94645 10.12912 11.44929 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.011421 B = 0.003656 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2451.117413 B = 7655.992673 C = 9589.339635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.140 3.860 3 H 0.072 0.928 4 C -0.143 4.143 5 C 0.178 3.822 6 H 0.075 0.925 7 N -0.735 5.735 8 C -0.247 4.247 9 H 0.093 0.907 10 C 0.008 3.992 11 N -0.931 5.931 12 Si 0.883 3.117 13 H -0.284 1.284 14 H -0.291 1.291 15 H -0.276 1.276 16 C 0.074 3.926 17 N -0.593 5.593 18 C 0.616 3.384 19 O -0.553 6.553 20 C -0.091 4.091 21 C 0.087 3.913 22 N -0.362 5.362 23 C 0.105 3.895 24 C 0.502 3.498 25 N -0.851 5.851 26 O -0.504 6.504 27 N -0.032 5.032 28 N -0.189 5.189 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.364 0.636 35 H 0.260 0.740 36 H 0.068 0.932 37 H 0.095 0.905 38 H 0.204 0.796 39 H 0.129 0.871 40 H 0.134 0.866 41 H 0.403 0.597 42 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.241 12.720 -23.153 27.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.037 3.963 3 H 0.090 0.910 4 C -0.182 4.182 5 C 0.066 3.934 6 H 0.093 0.907 7 N -0.376 5.376 8 C -0.376 4.376 9 H 0.110 0.890 10 C -0.188 4.188 11 N -0.578 5.578 12 Si 0.713 3.287 13 H -0.211 1.211 14 H -0.217 1.217 15 H -0.202 1.202 16 C -0.051 4.051 17 N -0.325 5.325 18 C 0.403 3.597 19 O -0.432 6.432 20 C -0.229 4.229 21 C -0.068 4.068 22 N -0.148 5.148 23 C -0.021 4.021 24 C 0.284 3.716 25 N -0.417 5.417 26 O -0.376 6.376 27 N -0.013 5.013 28 N -0.064 5.064 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.102 0.898 33 H 0.092 0.908 34 H 0.197 0.803 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.113 0.887 38 H 0.221 0.779 39 H 0.147 0.853 40 H 0.152 0.848 41 H 0.231 0.769 42 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -6.326 11.826 -22.421 26.126 hybrid contribution 0.590 1.312 -0.323 1.475 sum -5.735 13.139 -22.743 26.884 Atomic orbital electron populations 1.22142 0.94773 1.02539 1.02467 1.21521 0.94569 0.95870 0.84348 0.91001 1.23084 1.01679 0.97348 0.96041 1.21294 0.92635 0.90932 0.88563 0.90653 1.42652 1.33941 1.04430 1.56592 1.19088 1.12593 0.80541 1.25420 0.88964 1.24661 0.98721 0.95289 1.00124 1.69700 1.36186 1.06906 1.45024 0.86572 0.81881 0.79843 0.80381 1.21072 1.21731 1.20210 1.23647 0.94441 0.87911 0.99099 1.48370 1.49387 1.30724 1.03992 1.16346 0.79884 0.82897 0.80576 1.90744 1.40183 1.28764 1.83532 1.21409 1.07814 1.00206 0.93433 1.23215 0.96877 0.94196 0.92527 1.49901 1.35506 1.21873 1.07474 1.21672 0.96516 1.07329 0.76577 1.20377 0.90903 0.77055 0.83288 1.43697 1.12713 1.77618 1.07720 1.90935 1.50367 1.46466 1.49874 1.82240 1.15792 1.14033 0.89187 1.74932 1.08188 1.07273 1.15959 0.91863 0.91370 0.92237 0.89829 0.90823 0.80304 0.93034 0.91406 0.88731 0.77932 0.85294 0.84808 0.76852 0.75896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.17 9.05 37.16 0.34 -1.83 16 2 C 0.14 2.10 3.49 -66.96 -0.23 1.87 16 3 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 4 C -0.14 -2.22 6.14 -24.90 -0.15 -2.37 16 5 C 0.18 3.45 3.71 -65.78 -0.24 3.21 16 6 H 0.08 1.51 8.09 -51.93 -0.42 1.09 16 7 N -0.74 -17.35 5.05 -51.35 -0.26 -17.61 16 8 C -0.25 -6.97 10.44 -15.06 -0.16 -7.12 16 9 H 0.09 2.79 8.06 -52.49 -0.42 2.37 16 10 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 11 N -0.93 -29.49 13.97 55.49 0.78 -28.71 16 12 Si 0.88 22.32 27.73 -169.99 -4.71 17.60 16 13 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 14 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 15 H -0.28 -6.60 6.52 56.52 0.37 -6.23 16 16 C 0.07 1.42 5.82 -2.52 -0.01 1.40 16 17 N -0.59 -10.07 3.08 -164.24 -0.51 -10.58 16 18 C 0.62 10.38 7.63 -12.48 -0.10 10.29 16 19 O -0.55 -9.66 15.77 5.28 0.08 -9.58 16 20 C -0.09 -1.43 6.84 -83.55 -0.57 -2.00 16 21 C 0.09 0.98 11.27 -16.83 -0.19 0.79 16 22 N -0.36 -4.05 3.41 -62.24 -0.21 -4.26 16 23 C 0.11 0.53 7.02 -5.20 -0.04 0.50 16 24 C 0.50 3.90 8.14 -10.99 -0.09 3.81 16 25 N -0.85 -2.53 8.87 31.22 0.28 -2.25 16 26 O -0.50 -7.28 16.57 5.55 0.09 -7.18 16 27 N -0.03 -0.53 12.89 60.35 0.78 0.25 16 28 N -0.19 -3.41 9.39 32.85 0.31 -3.10 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.98 6.77 -51.92 -0.35 0.63 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.08 1.18 7.83 -51.93 -0.41 0.77 16 33 H 0.07 1.12 8.00 -51.93 -0.42 0.71 16 34 H 0.36 8.41 5.63 -40.82 -0.23 8.18 16 35 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 36 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 37 H 0.09 1.94 6.13 -51.93 -0.32 1.63 16 38 H 0.20 1.41 8.06 -52.49 -0.42 0.99 16 39 H 0.13 0.31 8.14 -51.93 -0.42 -0.12 16 40 H 0.13 0.05 8.08 -51.93 -0.42 -0.37 16 41 H 0.40 -0.41 8.83 -40.82 -0.36 -0.77 16 42 H 0.41 1.22 8.93 -40.82 -0.36 0.86 16 LS Contribution 355.95 15.07 5.36 5.36 Total: -1.00 -40.66 355.95 -4.97 -45.63 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -5.41 Total: 5.74 kcal Atomic # 6 Polarization: 10.23 SS G_CDS: -1.54 Total: 8.68 kcal Atomic # 7 Polarization: -67.42 SS G_CDS: 1.16 Total: -66.26 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: 0.18 Total: -16.76 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.71 Total: 17.60 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -40.66 -4.97 -45.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989832010.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.312 kcal (2) G-P(sol) polarization free energy of solvation -40.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds