Wall clock time and date at job start Fri Apr 10 2020 18:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.99578 * 2 1 4 4 C 1.54326 * 109.88463 * 238.89860 * 2 1 3 5 5 C 1.55153 * 102.94211 * 218.39299 * 4 2 1 6 6 H 1.09000 * 111.00471 * 153.61792 * 5 4 2 7 7 N 1.46504 * 111.00129 * 277.42718 * 5 4 2 8 8 C 1.36943 * 119.99781 * 205.00317 * 7 5 4 9 9 H 1.08002 * 119.99788 * 359.97438 * 8 7 5 10 10 C 1.38811 * 119.99622 * 180.27904 * 8 7 5 11 11 N 1.31614 * 120.00467 * 359.72375 * 10 8 7 12 12 Si 1.86801 * 119.99700 * 179.72266 * 10 8 7 13 13 H 1.48504 * 109.47306 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47021 * 119.99661 * 12 10 8 15 15 H 1.48501 * 109.47039 * 240.00078 * 12 10 8 16 16 C 1.54906 * 101.58297 * 35.50209 * 5 4 2 17 17 N 1.47023 * 109.87964 * 121.09270 * 2 1 3 18 18 C 1.34777 * 125.65309 * 298.31322 * 17 2 1 19 19 O 1.21606 * 119.99350 * 0.02562 * 18 17 2 20 20 C 1.47524 * 120.00462 * 179.97438 * 18 17 2 21 21 C 1.36589 * 125.76833 * 180.02562 * 20 18 17 22 22 N 1.34819 * 106.83528 * 179.97438 * 21 20 18 23 23 C 1.46505 * 126.59046 * 180.02562 * 22 21 20 24 24 C 1.50704 * 109.46683 * 124.99802 * 23 22 21 25 25 N 1.34773 * 119.99749 * 180.02562 * 24 23 22 26 26 O 1.21280 * 120.00042 * 359.97438 * 24 23 22 27 27 N 1.40202 * 106.81395 * 359.97438 * 22 21 20 28 28 N 1.28764 * 108.36295 * 359.74740 * 27 22 21 29 29 H 1.09002 * 109.46729 * 181.09823 * 1 2 3 30 30 H 1.08997 * 109.47153 * 301.10044 * 1 2 3 31 31 H 1.08998 * 109.46547 * 61.10059 * 1 2 3 32 32 H 1.09003 * 110.71326 * 100.02479 * 4 2 1 33 33 H 1.09000 * 110.71754 * 336.76123 * 4 2 1 34 34 H 0.97000 * 120.00410 * 25.00642 * 7 5 4 35 35 H 0.96995 * 120.00147 * 180.02562 * 11 10 8 36 36 H 1.09006 * 110.36600 * 81.83239 * 16 5 4 37 37 H 1.09005 * 110.36448 * 204.14668 * 16 5 4 38 38 H 1.07997 * 126.58733 * 359.95461 * 21 20 18 39 39 H 1.08997 * 109.47264 * 244.99564 * 23 22 21 40 40 H 1.08999 * 109.47021 * 4.99828 * 23 22 21 41 41 H 0.97006 * 120.00308 * 359.97438 * 25 24 23 42 42 H 0.97006 * 120.00212 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7496 -1.2426 5 6 3.2876 -1.5143 -0.6922 6 1 3.4857 -2.4108 -1.2798 7 7 4.4674 -0.6468 -0.6492 8 6 5.7218 -1.1941 -0.6985 9 1 5.8413 -2.2652 -0.7686 10 6 6.8397 -0.3725 -0.6519 11 7 6.6941 0.9327 -0.5659 12 14 8.5508 -1.1195 -0.7113 13 1 8.4427 -2.5975 -0.8063 14 1 9.2774 -0.5986 -1.8970 15 1 9.2926 -0.7563 0.5229 16 6 2.8145 -1.8794 0.7370 17 7 2.0300 -0.7140 1.1840 18 6 1.8086 -0.3611 2.4658 19 8 1.1436 0.6251 2.7186 20 6 2.3721 -1.1718 3.5620 21 6 2.2221 -0.9240 4.8968 22 7 2.8883 -1.8961 5.5517 23 6 3.0085 -2.0465 7.0040 24 6 2.5378 -3.4201 7.4074 25 7 2.5573 -3.7851 8.7046 26 8 2.1406 -4.1967 6.5647 27 7 3.4430 -2.7360 4.5756 28 7 3.1142 -2.2828 3.4161 29 1 -0.3633 -1.0275 0.0197 30 1 -0.3633 0.5308 0.8799 31 1 -0.3632 0.4966 -0.8997 32 1 2.3530 -0.0461 -2.0200 33 1 1.3051 -1.4460 -1.6182 34 1 4.3601 0.3151 -0.5858 35 1 7.4753 1.5068 -0.5337 36 1 2.1886 -2.7715 0.7130 37 1 3.6716 -2.0338 1.3924 38 1 1.6751 -0.1063 5.3422 39 1 4.0504 -1.9187 7.2975 40 1 2.3964 -1.2927 7.4992 41 1 2.8746 -3.1638 9.3786 42 1 2.2547 -4.6694 8.9642 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989832011.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:39 Heat of formation + Delta-G solvation = 55.663930 kcal Electronic energy + Delta-G solvation = -27484.400316 eV Core-core repulsion = 23502.764811 eV Total energy + Delta-G solvation = -3981.635506 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.154 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.12681 -39.89670 -39.43109 -37.15103 -34.68987 -34.20587 -33.86060 -31.67444 -31.20619 -30.54435 -28.63151 -28.28315 -25.32301 -23.98783 -23.45138 -22.96837 -21.48035 -21.06890 -19.86847 -19.11893 -18.05546 -17.63373 -17.20314 -16.80695 -16.34236 -16.01582 -15.68586 -15.24340 -14.72681 -14.55256 -14.47100 -14.09912 -13.71799 -13.55129 -13.21065 -13.17721 -12.90664 -12.56378 -12.09879 -11.94767 -11.81296 -11.51244 -11.20133 -11.05008 -10.89564 -10.83493 -10.59291 -10.34325 -10.26298 -10.19632 -10.14117 -9.88962 -9.66051 -9.61235 -9.13690 -8.91879 -8.07774 -6.91317 -5.72092 -3.01025 1.17643 1.82501 2.01518 2.02937 2.87322 3.39668 3.47197 3.53397 3.55434 3.67044 4.03689 4.19692 4.36183 4.44724 4.63344 4.74090 5.01937 5.22499 5.31509 5.33245 5.44083 5.66123 5.73247 5.79434 5.81538 5.96237 6.04861 6.14787 6.17875 6.27438 6.38354 6.45666 6.52870 6.63711 6.68895 6.80533 6.84292 7.08431 7.65890 7.77016 8.00109 8.12829 8.45610 8.57457 9.57504 10.13583 10.48472 11.50292 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010641 B = 0.004045 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2630.783006 B = 6920.640143 C = 8754.709370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.139 3.861 3 H 0.076 0.924 4 C -0.140 4.140 5 C 0.166 3.834 6 H 0.074 0.926 7 N -0.711 5.711 8 C -0.238 4.238 9 H 0.073 0.927 10 C -0.012 4.012 11 N -0.931 5.931 12 Si 0.905 3.095 13 H -0.279 1.279 14 H -0.292 1.292 15 H -0.293 1.293 16 C 0.070 3.930 17 N -0.581 5.581 18 C 0.616 3.384 19 O -0.556 6.556 20 C -0.083 4.083 21 C 0.086 3.914 22 N -0.363 5.363 23 C 0.105 3.895 24 C 0.504 3.496 25 N -0.852 5.852 26 O -0.507 6.507 27 N -0.038 5.038 28 N -0.189 5.189 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.385 0.615 35 H 0.254 0.746 36 H 0.055 0.945 37 H 0.101 0.899 38 H 0.203 0.797 39 H 0.129 0.871 40 H 0.134 0.866 41 H 0.403 0.597 42 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.951 -4.693 18.093 22.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.036 3.964 3 H 0.094 0.906 4 C -0.179 4.179 5 C 0.054 3.946 6 H 0.092 0.908 7 N -0.351 5.351 8 C -0.369 4.369 9 H 0.091 0.909 10 C -0.208 4.208 11 N -0.579 5.579 12 Si 0.736 3.264 13 H -0.204 1.204 14 H -0.219 1.219 15 H -0.220 1.220 16 C -0.055 4.055 17 N -0.311 5.311 18 C 0.403 3.597 19 O -0.435 6.435 20 C -0.221 4.221 21 C -0.069 4.069 22 N -0.148 5.148 23 C -0.021 4.021 24 C 0.286 3.714 25 N -0.418 5.418 26 O -0.379 6.379 27 N -0.019 5.019 28 N -0.064 5.064 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.102 0.898 33 H 0.092 0.908 34 H 0.219 0.781 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.119 0.881 38 H 0.220 0.780 39 H 0.147 0.853 40 H 0.152 0.848 41 H 0.232 0.768 42 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -11.526 -5.884 17.328 21.627 hybrid contribution 0.535 0.775 1.101 1.449 sum -10.992 -5.109 18.429 22.058 Atomic orbital electron populations 1.22137 0.95389 1.01821 1.02390 1.21525 0.93561 0.96727 0.84589 0.90614 1.23095 0.98459 1.00036 0.96261 1.21392 0.86878 0.94317 0.92041 0.90781 1.42331 1.00129 1.05443 1.87191 1.19318 0.83195 0.92105 1.42294 0.90862 1.24732 0.97809 0.95356 1.02880 1.69679 1.28684 1.02117 1.57451 0.86139 0.84912 0.78259 0.77041 1.20415 1.21946 1.22045 1.23611 0.95426 0.86088 1.00417 1.48164 1.50525 1.28554 1.03889 1.16302 0.79758 0.83036 0.80634 1.90739 1.41912 1.27297 1.83532 1.21403 1.08334 0.98879 0.93459 1.23204 0.96747 0.94411 0.92586 1.49824 1.37385 1.20290 1.07322 1.21658 1.06146 0.97538 0.76753 1.20399 0.78667 0.89159 0.83220 1.43703 1.69617 1.20689 1.07760 1.90908 1.44443 1.52660 1.49900 1.82156 1.17908 1.12537 0.89264 1.74844 1.08208 1.07443 1.15869 0.92834 0.91590 0.91969 0.89779 0.90782 0.78118 0.93641 0.92728 0.88087 0.77990 0.85334 0.84818 0.76817 0.75985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 9.10 37.16 0.34 -2.00 16 2 C 0.14 2.41 3.45 -66.95 -0.23 2.17 16 3 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 4 C -0.14 -2.30 6.08 -24.90 -0.15 -2.45 16 5 C 0.17 3.31 3.72 -65.78 -0.24 3.07 16 6 H 0.07 1.43 8.09 -51.93 -0.42 1.01 16 7 N -0.71 -17.87 5.23 -51.35 -0.27 -18.14 16 8 C -0.24 -6.63 9.96 -15.06 -0.15 -6.78 16 9 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 10 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 11 N -0.93 -28.48 13.06 55.49 0.72 -27.76 16 12 Si 0.91 22.79 29.55 -169.99 -5.02 17.76 16 13 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 14 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 15 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 16 C 0.07 1.37 5.81 -2.53 -0.01 1.35 16 17 N -0.58 -11.08 3.06 -164.23 -0.50 -11.58 16 18 C 0.62 11.93 7.64 -12.47 -0.10 11.83 16 19 O -0.56 -11.22 15.91 5.27 0.08 -11.14 16 20 C -0.08 -1.47 6.84 -83.56 -0.57 -2.04 16 21 C 0.09 1.13 11.27 -16.84 -0.19 0.94 16 22 N -0.36 -4.55 3.41 -62.24 -0.21 -4.77 16 23 C 0.11 0.65 7.02 -5.19 -0.04 0.62 16 24 C 0.50 4.15 8.13 -10.98 -0.09 4.06 16 25 N -0.85 -2.84 8.87 31.22 0.28 -2.57 16 26 O -0.51 -7.32 16.56 5.56 0.09 -7.23 16 27 N -0.04 -0.67 12.88 60.35 0.78 0.11 16 28 N -0.19 -3.62 9.40 32.84 0.31 -3.32 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 1.06 6.90 -51.93 -0.36 0.70 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 33 H 0.07 1.03 7.85 -51.93 -0.41 0.62 16 34 H 0.38 10.44 7.86 -40.82 -0.32 10.12 16 35 H 0.25 7.52 8.31 -40.82 -0.34 7.19 16 36 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.10 2.25 6.15 -51.93 -0.32 1.93 16 38 H 0.20 1.83 8.06 -52.49 -0.42 1.40 16 39 H 0.13 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.13 0.21 8.08 -51.93 -0.42 -0.21 16 41 H 0.40 -0.19 8.83 -40.82 -0.36 -0.55 16 42 H 0.41 1.28 8.93 -40.82 -0.36 0.91 16 LS Contribution 359.54 15.07 5.42 5.42 Total: -1.00 -40.00 359.54 -5.33 -45.33 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -5.48 Total: 7.54 kcal Atomic # 6 Polarization: 11.87 SS G_CDS: -1.53 Total: 10.34 kcal Atomic # 7 Polarization: -69.13 SS G_CDS: 1.10 Total: -68.02 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: 0.18 Total: -18.37 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -40.00 -5.33 -45.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989832011.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.994 kcal (2) G-P(sol) polarization free energy of solvation -39.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds