Wall clock time and date at job start Fri Apr 10 2020 18:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.99578 * 2 1 4 4 C 1.54326 * 109.88463 * 238.89860 * 2 1 3 5 5 C 1.55153 * 102.94211 * 218.39299 * 4 2 1 6 6 H 1.09000 * 111.00471 * 153.61792 * 5 4 2 7 7 N 1.46504 * 111.00129 * 277.42718 * 5 4 2 8 8 C 1.36943 * 119.99781 * 205.00317 * 7 5 4 9 9 H 1.08002 * 119.99788 * 359.97438 * 8 7 5 10 10 C 1.38811 * 119.99622 * 180.27904 * 8 7 5 11 11 N 1.31614 * 120.00467 * 359.72375 * 10 8 7 12 12 Si 1.86801 * 119.99700 * 179.72266 * 10 8 7 13 13 H 1.48504 * 109.47306 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47021 * 119.99661 * 12 10 8 15 15 H 1.48501 * 109.47039 * 240.00078 * 12 10 8 16 16 C 1.54906 * 101.58297 * 35.50209 * 5 4 2 17 17 N 1.47023 * 109.87964 * 121.09270 * 2 1 3 18 18 C 1.34777 * 125.65309 * 298.31322 * 17 2 1 19 19 O 1.21606 * 119.99350 * 0.02562 * 18 17 2 20 20 C 1.47524 * 120.00462 * 179.97438 * 18 17 2 21 21 C 1.36589 * 125.76833 * 180.02562 * 20 18 17 22 22 N 1.34819 * 106.83528 * 179.97438 * 21 20 18 23 23 C 1.46505 * 126.59046 * 180.02562 * 22 21 20 24 24 C 1.50704 * 109.46683 * 124.99802 * 23 22 21 25 25 N 1.34773 * 119.99749 * 180.02562 * 24 23 22 26 26 O 1.21280 * 120.00042 * 359.97438 * 24 23 22 27 27 N 1.40202 * 106.81395 * 359.97438 * 22 21 20 28 28 N 1.28764 * 108.36295 * 359.74740 * 27 22 21 29 29 H 1.09002 * 109.46729 * 181.09823 * 1 2 3 30 30 H 1.08997 * 109.47153 * 301.10044 * 1 2 3 31 31 H 1.08998 * 109.46547 * 61.10059 * 1 2 3 32 32 H 1.09003 * 110.71326 * 100.02479 * 4 2 1 33 33 H 1.09000 * 110.71754 * 336.76123 * 4 2 1 34 34 H 0.97000 * 120.00410 * 25.00642 * 7 5 4 35 35 H 0.96995 * 120.00147 * 180.02562 * 11 10 8 36 36 H 1.09006 * 110.36600 * 81.83239 * 16 5 4 37 37 H 1.09005 * 110.36448 * 204.14668 * 16 5 4 38 38 H 1.07997 * 126.58733 * 359.95461 * 21 20 18 39 39 H 1.08997 * 109.47264 * 244.99564 * 23 22 21 40 40 H 1.08999 * 109.47021 * 4.99828 * 23 22 21 41 41 H 0.97006 * 120.00308 * 359.97438 * 25 24 23 42 42 H 0.97006 * 120.00212 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7496 -1.2426 5 6 3.2876 -1.5143 -0.6922 6 1 3.4857 -2.4108 -1.2798 7 7 4.4674 -0.6468 -0.6492 8 6 5.7218 -1.1941 -0.6985 9 1 5.8413 -2.2652 -0.7686 10 6 6.8397 -0.3725 -0.6519 11 7 6.6941 0.9327 -0.5659 12 14 8.5508 -1.1195 -0.7113 13 1 8.4427 -2.5975 -0.8063 14 1 9.2774 -0.5986 -1.8970 15 1 9.2926 -0.7563 0.5229 16 6 2.8145 -1.8794 0.7370 17 7 2.0300 -0.7140 1.1840 18 6 1.8086 -0.3611 2.4658 19 8 1.1436 0.6251 2.7186 20 6 2.3721 -1.1718 3.5620 21 6 2.2221 -0.9240 4.8968 22 7 2.8883 -1.8961 5.5517 23 6 3.0085 -2.0465 7.0040 24 6 2.5378 -3.4201 7.4074 25 7 2.5573 -3.7851 8.7046 26 8 2.1406 -4.1967 6.5647 27 7 3.4430 -2.7360 4.5756 28 7 3.1142 -2.2828 3.4161 29 1 -0.3633 -1.0275 0.0197 30 1 -0.3633 0.5308 0.8799 31 1 -0.3632 0.4966 -0.8997 32 1 2.3530 -0.0461 -2.0200 33 1 1.3051 -1.4460 -1.6182 34 1 4.3601 0.3151 -0.5858 35 1 7.4753 1.5068 -0.5337 36 1 2.1886 -2.7715 0.7130 37 1 3.6716 -2.0338 1.3924 38 1 1.6751 -0.1063 5.3422 39 1 4.0504 -1.9187 7.2975 40 1 2.3964 -1.2927 7.4992 41 1 2.8746 -3.1638 9.3786 42 1 2.2547 -4.6694 8.9642 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989832011.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:39 Heat of formation + Delta-G solvation = 20.991257 kcal Electronic energy + Delta-G solvation = -27485.903836 eV Core-core repulsion = 23502.764811 eV Total energy + Delta-G solvation = -3983.139026 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.154 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.25133 -41.00868 -40.45819 -38.67282 -35.80715 -35.61623 -34.77716 -33.19586 -32.92098 -31.68017 -30.11122 -29.42659 -26.71971 -25.75873 -25.04255 -23.95043 -22.74336 -21.91192 -21.39002 -20.29219 -19.29059 -18.90241 -18.31617 -17.81263 -17.60658 -16.99790 -16.87559 -16.45331 -16.07959 -16.00966 -15.62904 -15.40338 -15.28322 -14.82589 -14.77007 -14.42834 -14.16293 -13.82437 -13.47504 -13.22942 -13.11923 -13.07436 -12.87937 -12.69691 -12.44778 -12.20607 -12.10050 -11.82478 -11.79537 -11.60790 -11.45766 -11.14345 -11.04521 -10.92379 -10.75814 -10.34156 -9.60094 -8.94874 -7.91822 -5.19832 0.12998 0.69481 1.00819 1.43840 1.47025 1.47894 1.57969 2.03151 2.27055 2.36341 2.57450 3.16562 3.39583 3.45011 3.64050 3.81735 3.89717 3.94294 3.98205 3.99376 4.06978 4.16694 4.35167 4.42405 4.50295 4.65960 4.74814 4.80552 4.89448 5.07678 5.16325 5.23534 5.30081 5.35100 5.39143 5.56606 5.59434 5.80091 6.29846 6.34215 6.54441 6.87801 7.16575 7.22773 7.36249 8.10719 8.34003 9.31787 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010641 B = 0.004045 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2630.783006 B = 6920.640143 C = 8754.709370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.133 3.867 3 H 0.051 0.949 4 C -0.123 4.123 5 C 0.155 3.845 6 H 0.084 0.916 7 N -0.722 5.722 8 C -0.233 4.233 9 H 0.079 0.921 10 C -0.075 4.075 11 N -0.970 5.970 12 Si 0.968 3.032 13 H -0.265 1.265 14 H -0.292 1.292 15 H -0.300 1.300 16 C 0.085 3.915 17 N -0.588 5.588 18 C 0.609 3.391 19 O -0.572 6.572 20 C -0.126 4.126 21 C 0.113 3.887 22 N -0.347 5.347 23 C 0.092 3.908 24 C 0.501 3.499 25 N -0.824 5.824 26 O -0.580 6.580 27 N -0.075 5.075 28 N -0.224 5.224 29 H 0.063 0.937 30 H 0.049 0.951 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.110 0.890 34 H 0.371 0.629 35 H 0.248 0.752 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.248 0.752 39 H 0.160 0.840 40 H 0.192 0.808 41 H 0.425 0.575 42 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.915 -5.022 19.895 24.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.031 3.969 3 H 0.069 0.931 4 C -0.161 4.161 5 C 0.045 3.955 6 H 0.102 0.898 7 N -0.361 5.361 8 C -0.365 4.365 9 H 0.097 0.903 10 C -0.267 4.267 11 N -0.621 5.621 12 Si 0.797 3.203 13 H -0.190 1.190 14 H -0.219 1.219 15 H -0.227 1.227 16 C -0.041 4.041 17 N -0.319 5.319 18 C 0.397 3.603 19 O -0.453 6.453 20 C -0.265 4.265 21 C -0.044 4.044 22 N -0.132 5.132 23 C -0.031 4.031 24 C 0.284 3.716 25 N -0.390 5.390 26 O -0.458 6.458 27 N -0.056 5.056 28 N -0.098 5.098 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.106 0.894 32 H 0.100 0.900 33 H 0.128 0.872 34 H 0.203 0.797 35 H 0.057 0.943 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.264 0.736 39 H 0.178 0.822 40 H 0.209 0.791 41 H 0.258 0.742 42 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -12.493 -6.268 19.213 23.759 hybrid contribution 0.763 0.856 0.758 1.375 sum -11.730 -5.412 19.971 23.785 Atomic orbital electron populations 1.22029 0.92934 1.02567 1.02906 1.21640 0.95446 0.95411 0.84440 0.93084 1.23019 0.97347 1.00076 0.95673 1.21664 0.86591 0.94436 0.92802 0.89832 1.42473 1.00974 1.05286 1.87330 1.19690 0.84448 0.92353 1.39970 0.90338 1.25489 1.01387 0.95794 1.04022 1.69833 1.29139 1.03361 1.59736 0.85147 0.80545 0.78159 0.76405 1.18969 1.21900 1.22736 1.23314 0.94870 0.86999 0.98934 1.48285 1.50557 1.28530 1.04481 1.16632 0.79525 0.83049 0.81085 1.90704 1.42775 1.27961 1.83847 1.21537 1.10419 0.99620 0.94912 1.23817 0.94875 0.94527 0.91150 1.50138 1.35243 1.18666 1.09129 1.22407 1.09336 0.98004 0.73322 1.20753 0.77730 0.89297 0.83795 1.43522 1.67564 1.21210 1.06720 1.90896 1.48171 1.54720 1.52057 1.82020 1.19487 1.14153 0.89898 1.74798 1.09276 1.08436 1.17246 0.91782 0.93158 0.89426 0.89975 0.87152 0.79709 0.94271 0.90973 0.91061 0.73584 0.82231 0.79102 0.74212 0.75587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.06 9.10 71.98 0.65 -3.41 16 2 C 0.13 4.57 3.45 45.34 0.16 4.73 16 3 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 4 C -0.12 -3.88 6.08 31.78 0.19 -3.69 16 5 C 0.16 6.17 3.72 46.38 0.17 6.34 16 6 H 0.08 3.16 8.09 -2.39 -0.02 3.14 16 7 N -0.72 -36.99 5.23 -316.37 -1.66 -38.64 16 8 C -0.23 -13.12 9.96 84.03 0.84 -12.28 16 9 H 0.08 4.26 7.83 -2.91 -0.02 4.23 16 10 C -0.07 -4.40 5.50 84.86 0.47 -3.94 16 11 N -0.97 -60.90 13.06 21.65 0.28 -60.62 16 12 Si 0.97 47.59 29.55 68.60 2.03 49.62 16 13 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 14 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 15 H -0.30 -14.93 7.11 99.48 0.71 -14.22 16 16 C 0.08 3.32 5.81 86.85 0.50 3.83 16 17 N -0.59 -22.66 3.06 -791.76 -2.43 -25.09 16 18 C 0.61 23.86 7.64 86.69 0.66 24.52 16 19 O -0.57 -23.13 15.91 -4.05 -0.06 -23.20 16 20 C -0.13 -4.49 6.84 40.82 0.28 -4.21 16 21 C 0.11 2.78 11.27 83.85 0.95 3.73 16 22 N -0.35 -8.10 3.41 -350.82 -1.20 -9.30 16 23 C 0.09 0.82 7.02 85.63 0.60 1.42 16 24 C 0.50 7.22 8.13 87.66 0.71 7.94 16 25 N -0.82 -3.18 8.87 -173.53 -1.54 -4.72 16 26 O -0.58 -16.76 16.56 -3.03 -0.05 -16.81 16 27 N -0.08 -2.66 12.88 37.02 0.48 -2.19 16 28 N -0.22 -8.82 9.40 -50.00 -0.47 -9.29 16 29 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.05 1.56 6.90 -2.39 -0.02 1.55 16 31 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 33 H 0.11 2.72 7.85 -2.39 -0.02 2.70 16 34 H 0.37 20.81 7.86 -92.71 -0.73 20.08 16 35 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 36 H 0.07 2.55 8.14 -2.38 -0.02 2.53 16 37 H 0.07 3.29 6.15 -2.38 -0.01 3.27 16 38 H 0.25 3.51 8.06 -2.91 -0.02 3.49 16 39 H 0.16 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.19 -0.51 8.08 -2.39 -0.02 -0.53 16 41 H 0.43 -2.09 8.83 -92.70 -0.82 -2.91 16 42 H 0.41 1.70 8.93 -92.70 -0.83 0.87 16 Total: -1.00 -93.34 359.54 0.29 -93.04 By element: Atomic # 1 Polarization: 23.48 SS G_CDS: -1.28 Total: 22.21 kcal Atomic # 6 Polarization: 18.79 SS G_CDS: 6.19 Total: 24.98 kcal Atomic # 7 Polarization: -143.32 SS G_CDS: -6.53 Total: -149.84 kcal Atomic # 8 Polarization: -39.89 SS G_CDS: -0.11 Total: -40.01 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 2.03 Total: 49.62 kcal Total: -93.34 0.29 -93.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989832011.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.036 kcal (2) G-P(sol) polarization free energy of solvation -93.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds