Wall clock time and date at job start Fri Apr 10 2020 18:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 120.00041 * 2 1 4 4 H 1.48503 * 109.47436 * 269.99992 * 3 2 1 5 5 H 1.48499 * 109.47389 * 30.00313 * 3 2 1 6 6 H 1.48504 * 109.47155 * 150.00118 * 3 2 1 7 7 C 1.38812 * 120.00233 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00513 * 179.97438 * 7 2 1 9 9 N 1.36944 * 119.99527 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99740 * 179.97438 * 9 7 2 11 11 C 1.53346 * 109.41956 * 275.13099 * 10 9 7 12 12 C 1.53195 * 109.14901 * 178.67533 * 11 10 9 13 13 N 1.46919 * 108.89273 * 54.57640 * 12 11 10 14 14 C 1.34778 * 120.63255 * 126.34238 * 13 12 11 15 15 O 1.21279 * 120.00169 * 359.97438 * 14 13 12 16 16 C 1.50698 * 120.00023 * 179.97438 * 14 13 12 17 17 N 1.46502 * 109.47041 * 180.02562 * 16 14 13 18 18 C 1.34587 * 125.74986 * 124.71825 * 17 16 14 19 19 N 1.30872 * 107.62187 * 179.86767 * 18 17 16 20 20 C 1.34549 * 107.27416 * 0.38425 * 19 18 17 21 21 C 1.47868 * 126.05212 * 179.79140 * 20 19 18 22 22 N 1.34781 * 119.99528 * 359.95743 * 21 20 19 23 23 O 1.21552 * 120.00054 * 179.97438 * 21 20 19 24 24 N 1.28855 * 125.74872 * 305.02244 * 17 16 14 25 25 C 1.46933 * 118.74003 * 306.32349 * 13 12 11 26 26 C 1.53034 * 109.45778 * 155.00078 * 10 9 7 27 27 H 0.97006 * 119.99415 * 359.97438 * 1 2 3 28 28 H 0.96989 * 119.99951 * 0.02562 * 9 7 2 29 29 H 1.09001 * 109.45983 * 35.03272 * 10 9 7 30 30 H 1.08997 * 109.68637 * 58.70742 * 11 10 9 31 31 H 1.09002 * 109.47277 * 298.50998 * 11 10 9 32 32 H 1.09002 * 109.58720 * 294.71670 * 12 11 10 33 33 H 1.08996 * 109.58651 * 174.43567 * 12 11 10 34 34 H 1.09001 * 109.47488 * 299.99559 * 16 14 13 35 35 H 1.09001 * 109.47269 * 59.99982 * 16 14 13 36 36 H 1.08000 * 126.18729 * 0.02562 * 18 17 16 37 37 H 0.96995 * 120.00082 * 0.02562 * 22 21 20 38 38 H 0.96996 * 119.99376 * 180.02562 * 22 21 20 39 39 H 1.08994 * 109.58580 * 173.39910 * 25 13 12 40 40 H 1.09006 * 109.57831 * 293.67403 * 25 13 12 41 41 H 1.08994 * 109.50232 * 61.43598 * 26 10 9 42 42 H 1.09007 * 109.52628 * 301.35259 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 6 2.4239 -4.0330 -1.4425 12 6 3.2180 -5.3431 -1.4337 13 7 2.4410 -6.3655 -0.7200 14 6 2.1725 -7.5526 -1.2992 15 8 2.5731 -7.7847 -2.4202 16 6 1.3747 -8.5913 -0.5539 17 7 1.2213 -9.7831 -1.3920 18 6 1.5712 -11.0364 -1.0483 19 7 1.2772 -11.8200 -2.0545 20 6 0.7531 -11.0469 -3.0229 21 6 0.2816 -11.5093 -4.3459 22 7 0.3590 -12.8153 -4.6701 23 8 -0.1755 -10.7117 -5.1412 24 7 0.7336 -9.8073 -2.5844 25 6 1.9624 -6.0697 0.6373 26 6 1.1809 -4.7524 0.6083 27 1 -0.4849 0.8401 0.0004 28 1 0.3556 -2.3880 -0.0005 29 1 2.9689 -3.5508 0.5876 30 1 3.0302 -3.2430 -1.8857 31 1 1.5128 -4.1638 -2.0264 32 1 4.1711 -5.1892 -0.9277 33 1 3.3967 -5.6689 -2.4583 34 1 1.8955 -8.8588 0.3655 35 1 0.3914 -8.1887 -0.3107 36 1 2.0123 -11.3409 -0.1106 37 1 0.7236 -13.4517 -4.0355 38 1 0.0500 -13.1186 -5.5381 39 1 1.3105 -6.8739 0.9783 40 1 2.8131 -5.9776 1.3126 41 1 0.2814 -4.8763 0.0053 42 1 0.9020 -4.4725 1.6243 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996606614.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:41 Heat of formation + Delta-G solvation = 43.119471 kcal Electronic energy + Delta-G solvation = -26668.663328 eV Core-core repulsion = 22686.483854 eV Total energy + Delta-G solvation = -3982.179474 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.154 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.74598 -40.29217 -39.32142 -37.59976 -34.89619 -34.65679 -33.80494 -32.29607 -31.96405 -31.11699 -29.63752 -28.47006 -25.21255 -24.61164 -23.26001 -22.84884 -22.45298 -20.95601 -20.48271 -19.20808 -18.53085 -17.83119 -17.40123 -17.05008 -16.62793 -16.52463 -15.69020 -15.65824 -15.15359 -14.91334 -14.62763 -14.24192 -14.09188 -13.78811 -13.76987 -13.61869 -13.25281 -12.86261 -12.53909 -12.28563 -12.11583 -11.62903 -11.05464 -10.97430 -10.88200 -10.83960 -10.74147 -10.61243 -10.53163 -10.35661 -10.22285 -10.00284 -9.95085 -9.76566 -9.64872 -8.97467 -8.72990 -7.05036 -5.83778 -3.13527 1.17583 1.67894 1.79879 2.27908 2.76212 3.05771 3.18630 3.39060 3.44251 3.45922 3.81530 3.92457 4.09361 4.40353 4.45819 4.51780 4.70905 4.74960 5.04469 5.19625 5.30378 5.41758 5.50322 5.65390 5.67739 5.75068 5.82433 5.96464 6.06511 6.08493 6.13813 6.33153 6.42933 6.43912 6.45304 6.79485 6.94997 6.96066 7.19188 7.62720 7.71596 7.89052 7.99248 8.34280 9.45744 10.01842 10.36060 11.38593 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.027054 B = 0.002284 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.706035 B =12257.113727 C =12657.081506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.907 3.093 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.242 4.242 8 H 0.071 0.929 9 N -0.724 5.724 10 C 0.179 3.821 11 C -0.151 4.151 12 C 0.114 3.886 13 N -0.600 5.600 14 C 0.501 3.499 15 O -0.515 6.515 16 C 0.099 3.901 17 N -0.287 5.287 18 C 0.194 3.806 19 N -0.486 5.486 20 C 0.127 3.873 21 C 0.624 3.376 22 N -0.835 5.835 23 O -0.517 6.517 24 N -0.214 5.214 25 C 0.107 3.893 26 C -0.142 4.142 27 H 0.256 0.744 28 H 0.384 0.616 29 H 0.049 0.951 30 H 0.077 0.923 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.086 0.914 34 H 0.140 0.860 35 H 0.131 0.869 36 H 0.228 0.772 37 H 0.410 0.590 38 H 0.410 0.590 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.066 0.934 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.810 -26.285 3.473 26.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.209 4.209 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.373 4.373 8 H 0.089 0.911 9 N -0.364 5.364 10 C 0.069 3.931 11 C -0.192 4.192 12 C -0.008 4.008 13 N -0.335 5.335 14 C 0.285 3.715 15 O -0.390 6.390 16 C -0.026 4.026 17 N -0.083 5.083 18 C -0.102 4.102 19 N -0.212 5.212 20 C -0.152 4.152 21 C 0.404 3.596 22 N -0.401 5.401 23 O -0.388 6.388 24 N -0.053 5.053 25 C -0.016 4.016 26 C -0.181 4.181 27 H 0.066 0.934 28 H 0.218 0.782 29 H 0.067 0.933 30 H 0.095 0.905 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.104 0.896 34 H 0.158 0.842 35 H 0.149 0.851 36 H 0.244 0.756 37 H 0.240 0.760 38 H 0.242 0.758 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.085 0.915 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.663 -25.389 2.073 25.736 hybrid contribution 0.333 0.703 0.426 0.887 sum 3.996 -24.686 2.499 25.132 Atomic orbital electron populations 1.69660 1.05138 1.25775 1.57366 1.24760 0.95520 0.97777 1.02795 0.86201 0.78631 0.83817 0.77580 1.21671 1.21761 1.20741 1.19215 0.90967 0.84037 1.43099 0.91141 1.42418 1.05796 0.99685 1.88518 1.20213 0.94341 0.86044 0.92519 1.22750 1.00286 0.94688 1.01504 1.21761 0.93705 0.87569 0.97740 1.48130 1.54037 1.14334 1.16949 1.20121 0.81273 0.83137 0.86975 1.90826 1.51707 1.78345 1.18117 1.22029 1.04612 0.83373 0.92561 1.46970 1.41848 1.08821 1.10683 1.26475 1.01711 0.80715 1.01268 1.71187 1.17256 1.32284 1.00447 1.23597 1.07051 0.86903 0.97641 1.16241 0.77627 0.82792 0.82925 1.43413 1.66935 1.08009 1.21693 1.90907 1.44408 1.54037 1.49496 1.74485 1.14221 1.21407 0.95150 1.21883 0.98843 0.98416 0.82449 1.22222 0.99287 0.93977 1.02582 0.93435 0.78249 0.93309 0.90478 0.92128 0.91450 0.89578 0.84234 0.85115 0.75576 0.75999 0.75800 0.90508 0.90489 0.91538 0.90135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.48 13.06 55.49 0.72 -26.76 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 21.87 29.55 -169.99 -5.02 16.84 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.24 -6.42 9.93 -15.06 -0.15 -6.56 16 8 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 9 N -0.72 -17.00 5.12 -53.23 -0.27 -17.27 16 10 C 0.18 3.14 2.73 -67.73 -0.19 2.95 16 11 C -0.15 -2.53 5.69 -26.45 -0.15 -2.68 16 12 C 0.11 1.57 6.42 -3.71 -0.02 1.55 16 13 N -0.60 -6.95 2.97 -172.77 -0.51 -7.46 16 14 C 0.50 6.13 7.71 -10.99 -0.08 6.04 16 15 O -0.52 -8.90 15.08 5.56 0.08 -8.81 16 16 C 0.10 0.72 5.27 -5.19 -0.03 0.70 16 17 N -0.29 -2.98 3.18 -63.76 -0.20 -3.19 16 18 C 0.19 1.52 12.57 -90.48 -1.14 0.38 16 19 N -0.49 -5.11 11.09 -12.36 -0.14 -5.25 16 20 C 0.13 1.72 7.96 -156.36 -1.24 0.48 16 21 C 0.62 8.24 8.10 -12.32 -0.10 8.14 16 22 N -0.83 -6.51 8.87 30.54 0.27 -6.24 16 23 O -0.52 -8.96 17.92 5.32 0.10 -8.87 16 24 N -0.21 -3.19 11.04 32.07 0.35 -2.84 16 25 C 0.11 0.95 6.34 -3.71 -0.02 0.93 16 26 C -0.14 -1.86 5.55 -26.62 -0.15 -2.01 16 27 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 28 H 0.38 9.71 7.80 -40.82 -0.32 9.39 16 29 H 0.05 0.86 8.08 -51.93 -0.42 0.44 16 30 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.09 1.31 7.00 -51.93 -0.36 0.94 16 34 H 0.14 0.29 7.86 -51.93 -0.41 -0.12 16 35 H 0.13 0.75 7.69 -51.93 -0.40 0.35 16 36 H 0.23 0.46 8.06 -52.49 -0.42 0.04 16 37 H 0.41 2.35 8.54 -40.82 -0.35 2.01 16 38 H 0.41 2.32 8.93 -40.82 -0.36 1.96 16 39 H 0.08 0.39 5.93 -51.93 -0.31 0.08 16 40 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.08 1.04 8.14 -51.92 -0.42 0.62 16 LS Contribution 357.88 15.07 5.39 5.39 Total: -1.00 -39.55 357.88 -8.03 -47.58 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -5.44 Total: 7.39 kcal Atomic # 6 Polarization: 12.85 SS G_CDS: -3.37 Total: 9.48 kcal Atomic # 7 Polarization: -69.23 SS G_CDS: 0.22 Total: -69.00 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: 0.18 Total: -17.68 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -39.55 -8.03 -47.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996606614.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.702 kcal (2) G-P(sol) polarization free energy of solvation -39.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds