Wall clock time and date at job start Fri Apr 10 2020 18:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 120.00041 * 2 1 4 4 H 1.48503 * 109.47436 * 269.99992 * 3 2 1 5 5 H 1.48499 * 109.47389 * 30.00313 * 3 2 1 6 6 H 1.48504 * 109.47155 * 150.00118 * 3 2 1 7 7 C 1.38812 * 120.00233 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00513 * 179.97438 * 7 2 1 9 9 N 1.36944 * 119.99527 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99740 * 179.97438 * 9 7 2 11 11 C 1.53346 * 109.41956 * 275.13099 * 10 9 7 12 12 C 1.53195 * 109.14901 * 178.67533 * 11 10 9 13 13 N 1.46919 * 108.89273 * 54.57640 * 12 11 10 14 14 C 1.34778 * 120.63255 * 126.34238 * 13 12 11 15 15 O 1.21279 * 120.00169 * 359.97438 * 14 13 12 16 16 C 1.50698 * 120.00023 * 179.97438 * 14 13 12 17 17 N 1.46502 * 109.47041 * 180.02562 * 16 14 13 18 18 C 1.34587 * 125.74986 * 124.71825 * 17 16 14 19 19 N 1.30872 * 107.62187 * 179.86767 * 18 17 16 20 20 C 1.34549 * 107.27416 * 0.38425 * 19 18 17 21 21 C 1.47868 * 126.05212 * 179.79140 * 20 19 18 22 22 N 1.34781 * 119.99528 * 359.95743 * 21 20 19 23 23 O 1.21552 * 120.00054 * 179.97438 * 21 20 19 24 24 N 1.28855 * 125.74872 * 305.02244 * 17 16 14 25 25 C 1.46933 * 118.74003 * 306.32349 * 13 12 11 26 26 C 1.53034 * 109.45778 * 155.00078 * 10 9 7 27 27 H 0.97006 * 119.99415 * 359.97438 * 1 2 3 28 28 H 0.96989 * 119.99951 * 0.02562 * 9 7 2 29 29 H 1.09001 * 109.45983 * 35.03272 * 10 9 7 30 30 H 1.08997 * 109.68637 * 58.70742 * 11 10 9 31 31 H 1.09002 * 109.47277 * 298.50998 * 11 10 9 32 32 H 1.09002 * 109.58720 * 294.71670 * 12 11 10 33 33 H 1.08996 * 109.58651 * 174.43567 * 12 11 10 34 34 H 1.09001 * 109.47488 * 299.99559 * 16 14 13 35 35 H 1.09001 * 109.47269 * 59.99982 * 16 14 13 36 36 H 1.08000 * 126.18729 * 0.02562 * 18 17 16 37 37 H 0.96995 * 120.00082 * 0.02562 * 22 21 20 38 38 H 0.96996 * 119.99376 * 180.02562 * 22 21 20 39 39 H 1.08994 * 109.58580 * 173.39910 * 25 13 12 40 40 H 1.09006 * 109.57831 * 293.67403 * 25 13 12 41 41 H 1.08994 * 109.50232 * 61.43598 * 26 10 9 42 42 H 1.09007 * 109.52628 * 301.35259 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 6 2.4239 -4.0330 -1.4425 12 6 3.2180 -5.3431 -1.4337 13 7 2.4410 -6.3655 -0.7200 14 6 2.1725 -7.5526 -1.2992 15 8 2.5731 -7.7847 -2.4202 16 6 1.3747 -8.5913 -0.5539 17 7 1.2213 -9.7831 -1.3920 18 6 1.5712 -11.0364 -1.0483 19 7 1.2772 -11.8200 -2.0545 20 6 0.7531 -11.0469 -3.0229 21 6 0.2816 -11.5093 -4.3459 22 7 0.3590 -12.8153 -4.6701 23 8 -0.1755 -10.7117 -5.1412 24 7 0.7336 -9.8073 -2.5844 25 6 1.9624 -6.0697 0.6373 26 6 1.1809 -4.7524 0.6083 27 1 -0.4849 0.8401 0.0004 28 1 0.3556 -2.3880 -0.0005 29 1 2.9689 -3.5508 0.5876 30 1 3.0302 -3.2430 -1.8857 31 1 1.5128 -4.1638 -2.0264 32 1 4.1711 -5.1892 -0.9277 33 1 3.3967 -5.6689 -2.4583 34 1 1.8955 -8.8588 0.3655 35 1 0.3914 -8.1887 -0.3107 36 1 2.0123 -11.3409 -0.1106 37 1 0.7236 -13.4517 -4.0355 38 1 0.0500 -13.1186 -5.5381 39 1 1.3105 -6.8739 0.9783 40 1 2.8131 -5.9776 1.3126 41 1 0.2814 -4.8763 0.0053 42 1 0.9020 -4.4725 1.6243 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996606614.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:41 Heat of formation + Delta-G solvation = 10.048152 kcal Electronic energy + Delta-G solvation = -26670.097408 eV Core-core repulsion = 22686.483854 eV Total energy + Delta-G solvation = -3983.613554 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.154 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.48797 -41.26451 -40.31092 -38.79895 -36.19909 -35.68318 -34.64856 -33.86896 -32.87469 -32.17640 -31.15506 -29.38799 -26.62326 -25.66881 -24.37518 -24.15074 -23.32070 -21.91339 -21.56258 -20.28831 -19.31382 -19.13663 -18.59717 -18.11736 -17.49671 -17.39931 -16.72239 -16.59193 -16.44879 -15.89129 -15.62498 -15.48102 -15.37650 -15.11342 -15.03193 -14.74419 -14.33036 -14.01490 -13.58414 -13.37529 -13.14556 -12.92411 -12.86349 -12.64318 -12.20650 -12.14942 -11.94975 -11.69865 -11.67818 -11.61474 -11.52323 -11.42523 -11.07809 -10.90292 -10.85422 -10.48445 -9.74514 -9.01256 -7.94912 -5.22954 0.31182 1.00665 1.17850 1.41895 1.46556 1.48144 1.55876 1.91729 2.24187 2.32151 2.55585 3.12999 3.26103 3.38592 3.61261 3.83521 3.85343 3.92344 4.04775 4.11122 4.16274 4.17772 4.35221 4.42640 4.62863 4.76450 4.82391 4.85171 4.88153 4.96891 5.11843 5.25041 5.31708 5.48390 5.53008 5.55947 5.60299 5.74585 6.20813 6.27577 6.31242 6.96346 7.02282 7.18010 7.33792 8.11230 8.32009 9.28492 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.027054 B = 0.002284 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.706035 B =12257.113727 C =12657.081506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.079 4.079 3 Si 0.968 3.032 4 H -0.293 1.293 5 H -0.297 1.297 6 H -0.266 1.266 7 C -0.235 4.235 8 H 0.077 0.923 9 N -0.738 5.738 10 C 0.172 3.828 11 C -0.140 4.140 12 C 0.125 3.875 13 N -0.599 5.599 14 C 0.494 3.506 15 O -0.575 6.575 16 C 0.099 3.901 17 N -0.293 5.293 18 C 0.216 3.784 19 N -0.497 5.497 20 C 0.108 3.892 21 C 0.616 3.384 22 N -0.804 5.804 23 O -0.574 6.574 24 N -0.272 5.272 25 C 0.112 3.888 26 C -0.135 4.135 27 H 0.249 0.751 28 H 0.371 0.629 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.032 0.968 32 H 0.089 0.911 33 H 0.065 0.935 34 H 0.208 0.792 35 H 0.152 0.848 36 H 0.290 0.710 37 H 0.423 0.577 38 H 0.421 0.579 39 H 0.131 0.869 40 H 0.104 0.896 41 H 0.051 0.949 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.341 -29.000 6.737 30.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.271 4.271 3 Si 0.798 3.202 4 H -0.221 1.221 5 H -0.224 1.224 6 H -0.190 1.190 7 C -0.367 4.367 8 H 0.095 0.905 9 N -0.377 5.377 10 C 0.063 3.937 11 C -0.181 4.181 12 C 0.001 3.999 13 N -0.332 5.332 14 C 0.282 3.718 15 O -0.454 6.454 16 C -0.023 4.023 17 N -0.088 5.088 18 C -0.078 4.078 19 N -0.223 5.223 20 C -0.171 4.171 21 C 0.397 3.603 22 N -0.370 5.370 23 O -0.450 6.450 24 N -0.111 5.111 25 C -0.010 4.010 26 C -0.174 4.174 27 H 0.058 0.942 28 H 0.202 0.798 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.051 0.949 32 H 0.107 0.893 33 H 0.083 0.917 34 H 0.225 0.775 35 H 0.169 0.831 36 H 0.305 0.695 37 H 0.256 0.744 38 H 0.255 0.745 39 H 0.149 0.851 40 H 0.122 0.878 41 H 0.070 0.930 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.241 -28.192 5.385 29.176 hybrid contribution -0.075 1.456 -0.559 1.561 sum 5.166 -26.736 4.825 27.655 Atomic orbital electron populations 1.69813 1.06590 1.25882 1.59865 1.25534 0.96324 1.01050 1.04171 0.85211 0.77945 0.79909 0.77148 1.22102 1.22379 1.19035 1.19618 0.91436 0.85235 1.40364 0.90478 1.42686 1.05444 1.01152 1.88449 1.20536 0.95009 0.85228 0.92909 1.22532 0.99069 0.96055 1.00474 1.21454 0.94345 0.86437 0.97638 1.48191 1.53487 1.13760 1.17794 1.21031 0.80544 0.83801 0.86443 1.90815 1.54091 1.79574 1.20940 1.22496 1.05447 0.81343 0.93063 1.47174 1.41523 1.10427 1.09697 1.27692 0.98836 0.79247 1.02046 1.71177 1.17904 1.32633 1.00615 1.23642 1.07940 0.87277 0.98226 1.16546 0.77211 0.83716 0.82872 1.43208 1.65040 1.06451 1.22336 1.90864 1.47325 1.55706 1.51152 1.74394 1.16361 1.22621 0.97768 1.22140 1.00254 0.97425 0.81154 1.22127 0.98440 0.94780 1.02069 0.94197 0.79768 0.92682 0.92889 0.94902 0.89300 0.91689 0.77487 0.83054 0.69498 0.74445 0.74492 0.85141 0.87772 0.92967 0.89379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.83 13.06 21.65 0.28 -58.55 16 2 C -0.08 -4.44 5.50 84.86 0.47 -3.98 16 3 Si 0.97 45.56 29.55 68.60 2.03 47.58 16 4 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 5 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 6 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.23 -12.52 9.93 84.03 0.83 -11.69 16 8 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16 9 N -0.74 -35.15 5.12 -322.33 -1.65 -36.81 16 10 C 0.17 5.88 2.73 45.12 0.12 6.01 16 11 C -0.14 -4.81 5.69 30.78 0.18 -4.63 16 12 C 0.12 3.34 6.42 86.36 0.55 3.89 16 13 N -0.60 -12.18 2.97 -818.91 -2.43 -14.62 16 14 C 0.49 10.87 7.71 87.66 0.68 11.55 16 15 O -0.58 -19.86 15.08 -3.03 -0.05 -19.91 16 16 C 0.10 0.96 5.27 85.63 0.45 1.41 16 17 N -0.29 -5.14 3.18 -355.64 -1.13 -6.27 16 18 C 0.22 2.41 12.57 180.30 2.27 4.68 16 19 N -0.50 -9.23 11.09 -193.03 -2.14 -11.37 16 20 C 0.11 2.89 7.96 137.13 1.09 3.98 16 21 C 0.62 16.74 8.10 86.79 0.70 17.44 16 22 N -0.80 -12.17 8.87 -175.58 -1.56 -13.73 16 23 O -0.57 -21.15 17.92 -3.88 -0.07 -21.21 16 24 N -0.27 -7.99 11.04 -52.44 -0.58 -8.57 16 25 C 0.11 1.42 6.34 86.36 0.55 1.97 16 26 C -0.14 -3.23 5.55 30.67 0.17 -3.06 16 27 H 0.25 14.76 8.31 -92.70 -0.77 13.99 16 28 H 0.37 19.30 7.80 -92.72 -0.72 18.58 16 29 H 0.06 1.84 8.08 -2.39 -0.02 1.82 16 30 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.03 1.27 8.14 -2.39 -0.02 1.26 16 32 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.06 2.04 7.00 -2.39 -0.02 2.03 16 34 H 0.21 -0.91 7.86 -2.39 -0.02 -0.93 16 35 H 0.15 0.92 7.69 -2.39 -0.02 0.90 16 36 H 0.29 -0.99 8.06 -2.91 -0.02 -1.02 16 37 H 0.42 4.29 8.54 -92.71 -0.79 3.50 16 38 H 0.42 4.57 8.93 -92.71 -0.83 3.74 16 39 H 0.13 0.35 5.93 -2.39 -0.01 0.34 16 40 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 41 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 Total: -1.00 -96.52 357.88 -0.48 -97.00 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: -1.24 Total: 18.87 kcal Atomic # 6 Polarization: 19.51 SS G_CDS: 8.06 Total: 27.57 kcal Atomic # 7 Polarization: -140.70 SS G_CDS: -9.21 Total: -149.91 kcal Atomic # 8 Polarization: -41.01 SS G_CDS: -0.12 Total: -41.12 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.58 kcal Total: -96.52 -0.48 -97.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996606614.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.047 kcal (2) G-P(sol) polarization free energy of solvation -96.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds