Wall clock time and date at job start Fri Apr 10 2020 18:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 120.00131 * 2 1 4 4 H 1.48498 * 109.47377 * 270.00205 * 3 2 1 5 5 H 1.48497 * 109.47199 * 30.00622 * 3 2 1 6 6 H 1.48505 * 109.47057 * 150.00629 * 3 2 1 7 7 C 1.38817 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00028 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99560 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99732 * 179.97438 * 9 7 2 11 11 C 1.53042 * 109.46175 * 155.00083 * 10 9 7 12 12 C 1.53183 * 109.31569 * 181.38612 * 11 10 9 13 13 N 1.46927 * 108.77551 * 305.36556 * 12 11 10 14 14 C 1.34781 * 120.63325 * 233.58223 * 13 12 11 15 15 O 1.21599 * 119.99180 * 7.36959 * 14 13 12 16 16 C 1.47522 * 120.00387 * 187.36589 * 14 13 12 17 17 C 1.36588 * 125.77087 * 187.30976 * 16 14 13 18 18 N 1.34819 * 106.83948 * 179.97438 * 17 16 14 19 19 C 1.46501 * 126.59387 * 179.97438 * 18 17 16 20 20 C 1.50697 * 109.46846 * 124.99858 * 19 18 17 21 21 N 1.34779 * 119.99435 * 179.72400 * 20 19 18 22 22 O 1.21279 * 120.00215 * 359.97438 * 20 19 18 23 23 N 1.40206 * 106.80802 * 0.23545 * 18 17 16 24 24 N 1.28763 * 108.37019 * 359.59326 * 23 18 17 25 25 C 1.46927 * 118.74192 * 53.86118 * 13 12 11 26 26 C 1.53041 * 109.46265 * 275.06784 * 10 9 7 27 27 H 0.97002 * 119.99822 * 359.97438 * 1 2 3 28 28 H 0.97001 * 120.00445 * 0.02562 * 9 7 2 29 29 H 1.09002 * 109.46012 * 35.02588 * 10 9 7 30 30 H 1.09000 * 109.49234 * 61.43244 * 11 10 9 31 31 H 1.09001 * 109.49517 * 301.34442 * 11 10 9 32 32 H 1.08998 * 109.58900 * 185.57650 * 12 11 10 33 33 H 1.09003 * 109.70504 * 65.22115 * 12 11 10 34 34 H 1.07997 * 126.58018 * 359.97366 * 17 16 14 35 35 H 1.09004 * 109.47271 * 4.99661 * 19 18 17 36 36 H 1.09004 * 109.47097 * 244.99861 * 19 18 17 37 37 H 0.97000 * 119.99603 * 180.27473 * 21 20 19 38 38 H 0.96995 * 120.00535 * 0.27698 * 21 20 19 39 39 H 1.09002 * 109.59018 * 65.92177 * 25 13 12 40 40 H 1.08992 * 109.58907 * 186.35405 * 25 13 12 41 41 H 1.08993 * 109.49888 * 298.57126 * 26 10 9 42 42 H 1.09008 * 109.49957 * 58.66446 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5479 1.4401 0.6999 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 6 1.1808 -4.7525 0.6083 12 6 1.9622 -6.0697 0.6372 13 7 2.4407 -6.3656 -0.7201 14 6 2.1723 -7.5526 -1.2993 15 8 1.4187 -8.3374 -0.7563 16 6 2.7928 -7.8997 -2.5919 17 6 2.4997 -8.9983 -3.3488 18 7 3.2838 -8.9386 -4.4439 19 6 3.3214 -9.9044 -5.5449 20 6 3.0846 -9.1883 -6.8495 21 7 3.0809 -9.8795 -8.0065 22 8 2.9019 -7.9894 -6.8587 23 7 4.0607 -7.7777 -4.3235 24 7 3.7415 -7.1880 -3.2242 25 6 3.2226 -5.3453 -1.4317 26 6 2.4222 -4.0340 -1.4394 27 1 -0.4850 0.8401 0.0004 28 1 0.3555 -2.3880 -0.0005 29 1 2.9688 -3.5508 0.5875 30 1 0.2813 -4.8762 0.0052 31 1 0.9024 -4.4722 1.6242 32 1 1.3103 -6.8739 0.9783 33 1 2.8129 -5.9776 1.3126 34 1 1.7783 -9.7672 -3.1149 35 1 2.5452 -10.6552 -5.3963 36 1 4.2969 -10.3902 -5.5689 37 1 2.9324 -9.4180 -8.8467 38 1 3.2266 -10.8384 -7.9991 39 1 4.1740 -5.1927 -0.9221 40 1 3.4024 -5.6713 -2.4560 41 1 1.5111 -4.1645 -2.0233 42 1 3.0275 -3.2424 -1.8811 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997368027.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:43 Heat of formation + Delta-G solvation = 58.728740 kcal Electronic energy + Delta-G solvation = -26881.117459 eV Core-core repulsion = 22899.614854 eV Total energy + Delta-G solvation = -3981.502606 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.154 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.47565 -40.06681 -39.54451 -37.20921 -35.02841 -34.40484 -34.24338 -32.02762 -31.26703 -30.52744 -29.25582 -28.72528 -25.17662 -23.54287 -23.45014 -22.63700 -22.03905 -21.39146 -20.30771 -19.26049 -18.29622 -17.81724 -17.14931 -16.90783 -16.52171 -16.24794 -15.79422 -15.50999 -14.87832 -14.77324 -14.71173 -14.20359 -13.87740 -13.64861 -13.42310 -13.33522 -13.23940 -12.98877 -12.37183 -12.07726 -11.93913 -11.65288 -11.19975 -11.01056 -10.83871 -10.70193 -10.60857 -10.42988 -10.37252 -10.24769 -10.14810 -9.82211 -9.68206 -9.53750 -9.43897 -8.79107 -8.35224 -6.87623 -5.69348 -2.97708 0.88800 1.56341 1.65347 1.88095 2.70952 3.12021 3.32971 3.49150 3.54132 3.55628 3.83352 4.00193 4.10470 4.22294 4.46447 4.65638 4.75128 5.02534 5.21199 5.44523 5.49575 5.53121 5.64719 5.73129 5.83405 5.92699 6.00463 6.10418 6.11019 6.29274 6.42493 6.54112 6.56033 6.59332 6.65409 6.80624 7.05658 7.20124 7.53377 7.56308 7.77288 7.81504 8.25443 8.49306 9.60299 10.18904 10.53762 11.53484 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016611 B = 0.002728 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.247918 B =10259.657597 C =11416.070911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.235 4.235 8 H 0.071 0.929 9 N -0.725 5.725 10 C 0.177 3.823 11 C -0.138 4.138 12 C 0.116 3.884 13 N -0.587 5.587 14 C 0.602 3.398 15 O -0.551 6.551 16 C -0.089 4.089 17 C 0.091 3.909 18 N -0.359 5.359 19 C 0.104 3.896 20 C 0.502 3.498 21 N -0.851 5.851 22 O -0.504 6.504 23 N -0.036 5.036 24 N -0.199 5.199 25 C 0.085 3.915 26 C -0.148 4.148 27 H 0.254 0.746 28 H 0.383 0.617 29 H 0.048 0.952 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.069 0.931 34 H 0.206 0.794 35 H 0.136 0.864 36 H 0.130 0.870 37 H 0.410 0.590 38 H 0.403 0.597 39 H 0.065 0.935 40 H 0.120 0.880 41 H 0.056 0.944 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.214 -28.794 -12.921 32.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.219 1.219 6 H -0.208 1.208 7 C -0.367 4.367 8 H 0.089 0.911 9 N -0.365 5.365 10 C 0.067 3.933 11 C -0.177 4.177 12 C -0.006 4.006 13 N -0.318 5.318 14 C 0.387 3.613 15 O -0.429 6.429 16 C -0.226 4.226 17 C -0.064 4.064 18 N -0.144 5.144 19 C -0.022 4.022 20 C 0.284 3.716 21 N -0.417 5.417 22 O -0.377 6.377 23 N -0.016 5.016 24 N -0.073 5.073 25 C -0.038 4.038 26 C -0.189 4.189 27 H 0.064 0.936 28 H 0.217 0.783 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.107 0.893 33 H 0.087 0.913 34 H 0.223 0.777 35 H 0.153 0.847 36 H 0.147 0.853 37 H 0.242 0.758 38 H 0.232 0.768 39 H 0.083 0.917 40 H 0.137 0.863 41 H 0.075 0.925 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.909 -27.394 -13.077 31.368 hybrid contribution -0.599 0.025 -0.257 0.653 sum 7.309 -27.369 -13.334 31.310 Atomic orbital electron populations 1.69668 1.05107 1.25537 1.57953 1.24743 0.95501 0.97661 1.03228 0.86203 0.78637 0.83967 0.77487 1.21786 1.21875 1.20773 1.19253 0.90997 0.84122 1.42285 0.91148 1.42443 1.05786 0.99760 1.88513 1.20212 0.94353 0.85964 0.92746 1.22192 0.99238 0.94095 1.02169 1.21680 0.98818 0.98251 0.81853 1.47971 1.52889 1.14280 1.16681 1.16780 0.80365 0.81905 0.82205 1.90765 1.37113 1.50655 1.64397 1.21469 1.03708 0.96636 1.00805 1.23277 0.96063 1.00337 0.86713 1.49815 1.28864 1.20087 1.15663 1.21707 1.07304 0.89682 0.83458 1.20359 0.77413 0.88091 0.85783 1.43698 1.76432 1.12677 1.08876 1.90938 1.46128 1.13997 1.86599 1.82159 1.13840 0.92359 1.13251 1.74550 1.10569 1.21000 1.01185 1.22708 0.93571 0.88020 0.99541 1.22720 0.99962 0.95092 1.01142 0.93599 0.78326 0.93407 0.91807 0.90538 0.89285 0.91315 0.77746 0.84656 0.85267 0.75820 0.76820 0.91655 0.86279 0.92498 0.90725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.95 13.06 55.49 0.72 -28.22 16 2 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 3 Si 0.91 22.97 29.55 -169.99 -5.02 17.94 16 4 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 5 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 6 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 7 C -0.24 -6.67 9.93 -15.06 -0.15 -6.82 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.72 -18.72 5.12 -53.38 -0.27 -18.99 16 10 C 0.18 3.65 2.73 -67.89 -0.19 3.47 16 11 C -0.14 -2.43 5.55 -26.61 -0.15 -2.58 16 12 C 0.12 1.79 6.44 -3.71 -0.02 1.76 16 13 N -0.59 -9.42 2.97 -173.74 -0.52 -9.93 16 14 C 0.60 9.53 7.67 -12.47 -0.10 9.44 16 15 O -0.55 -9.47 16.30 5.28 0.09 -9.39 16 16 C -0.09 -1.23 6.69 -83.55 -0.56 -1.79 16 17 C 0.09 0.89 11.28 -16.84 -0.19 0.70 16 18 N -0.36 -3.34 3.40 -62.24 -0.21 -3.55 16 19 C 0.10 0.37 7.02 -5.19 -0.04 0.33 16 20 C 0.50 3.21 8.14 -10.99 -0.09 3.13 16 21 N -0.85 -1.56 8.87 31.22 0.28 -1.28 16 22 O -0.50 -6.57 16.58 5.56 0.09 -6.48 16 23 N -0.04 -0.50 12.90 60.35 0.78 0.28 16 24 N -0.20 -2.98 8.79 32.84 0.29 -2.70 16 25 C 0.09 1.39 6.11 -3.48 -0.02 1.37 16 26 C -0.15 -2.86 5.67 -26.38 -0.15 -3.01 16 27 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 28 H 0.38 10.58 7.80 -40.82 -0.32 10.26 16 29 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 31 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 32 H 0.09 1.34 7.00 -51.93 -0.36 0.98 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.21 1.21 8.06 -52.49 -0.42 0.78 16 35 H 0.14 -0.12 8.08 -51.93 -0.42 -0.54 16 36 H 0.13 0.08 8.14 -51.93 -0.42 -0.35 16 37 H 0.41 0.81 8.93 -40.82 -0.36 0.45 16 38 H 0.40 -0.86 8.83 -40.82 -0.36 -1.22 16 39 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.12 1.98 4.12 -78.29 -0.32 1.66 16 41 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.07 1.53 8.14 -51.92 -0.42 1.11 16 LS Contribution 355.63 15.07 5.36 5.36 Total: -1.00 -40.38 355.63 -5.66 -46.04 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -5.50 Total: 5.49 kcal Atomic # 6 Polarization: 7.19 SS G_CDS: -1.74 Total: 5.44 kcal Atomic # 7 Polarization: -65.48 SS G_CDS: 1.07 Total: -64.41 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: 0.18 Total: -15.87 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -5.02 Total: 17.94 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -40.38 -5.66 -46.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997368027.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.769 kcal (2) G-P(sol) polarization free energy of solvation -40.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds