Wall clock time and date at job start Fri Apr 10 2020 18:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 120.00131 * 2 1 4 4 H 1.48498 * 109.47377 * 270.00205 * 3 2 1 5 5 H 1.48497 * 109.47199 * 30.00622 * 3 2 1 6 6 H 1.48505 * 109.47057 * 150.00629 * 3 2 1 7 7 C 1.38817 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00028 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99560 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99732 * 179.97438 * 9 7 2 11 11 C 1.53042 * 109.46175 * 155.00083 * 10 9 7 12 12 C 1.53183 * 109.31569 * 181.38612 * 11 10 9 13 13 N 1.46927 * 108.77551 * 305.36556 * 12 11 10 14 14 C 1.34781 * 120.63325 * 233.58223 * 13 12 11 15 15 O 1.21599 * 119.99180 * 7.36959 * 14 13 12 16 16 C 1.47522 * 120.00387 * 187.36589 * 14 13 12 17 17 C 1.36588 * 125.77087 * 187.30976 * 16 14 13 18 18 N 1.34819 * 106.83948 * 179.97438 * 17 16 14 19 19 C 1.46501 * 126.59387 * 179.97438 * 18 17 16 20 20 C 1.50697 * 109.46846 * 124.99858 * 19 18 17 21 21 N 1.34779 * 119.99435 * 179.72400 * 20 19 18 22 22 O 1.21279 * 120.00215 * 359.97438 * 20 19 18 23 23 N 1.40206 * 106.80802 * 0.23545 * 18 17 16 24 24 N 1.28763 * 108.37019 * 359.59326 * 23 18 17 25 25 C 1.46927 * 118.74192 * 53.86118 * 13 12 11 26 26 C 1.53041 * 109.46265 * 275.06784 * 10 9 7 27 27 H 0.97002 * 119.99822 * 359.97438 * 1 2 3 28 28 H 0.97001 * 120.00445 * 0.02562 * 9 7 2 29 29 H 1.09002 * 109.46012 * 35.02588 * 10 9 7 30 30 H 1.09000 * 109.49234 * 61.43244 * 11 10 9 31 31 H 1.09001 * 109.49517 * 301.34442 * 11 10 9 32 32 H 1.08998 * 109.58900 * 185.57650 * 12 11 10 33 33 H 1.09003 * 109.70504 * 65.22115 * 12 11 10 34 34 H 1.07997 * 126.58018 * 359.97366 * 17 16 14 35 35 H 1.09004 * 109.47271 * 4.99661 * 19 18 17 36 36 H 1.09004 * 109.47097 * 244.99861 * 19 18 17 37 37 H 0.97000 * 119.99603 * 180.27473 * 21 20 19 38 38 H 0.96995 * 120.00535 * 0.27698 * 21 20 19 39 39 H 1.09002 * 109.59018 * 65.92177 * 25 13 12 40 40 H 1.08992 * 109.58907 * 186.35405 * 25 13 12 41 41 H 1.08993 * 109.49888 * 298.57126 * 26 10 9 42 42 H 1.09008 * 109.49957 * 58.66446 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5479 1.4401 0.6999 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 6 1.1808 -4.7525 0.6083 12 6 1.9622 -6.0697 0.6372 13 7 2.4407 -6.3656 -0.7201 14 6 2.1723 -7.5526 -1.2993 15 8 1.4187 -8.3374 -0.7563 16 6 2.7928 -7.8997 -2.5919 17 6 2.4997 -8.9983 -3.3488 18 7 3.2838 -8.9386 -4.4439 19 6 3.3214 -9.9044 -5.5449 20 6 3.0846 -9.1883 -6.8495 21 7 3.0809 -9.8795 -8.0065 22 8 2.9019 -7.9894 -6.8587 23 7 4.0607 -7.7777 -4.3235 24 7 3.7415 -7.1880 -3.2242 25 6 3.2226 -5.3453 -1.4317 26 6 2.4222 -4.0340 -1.4394 27 1 -0.4850 0.8401 0.0004 28 1 0.3555 -2.3880 -0.0005 29 1 2.9688 -3.5508 0.5875 30 1 0.2813 -4.8762 0.0052 31 1 0.9024 -4.4722 1.6242 32 1 1.3103 -6.8739 0.9783 33 1 2.8129 -5.9776 1.3126 34 1 1.7783 -9.7672 -3.1149 35 1 2.5452 -10.6552 -5.3963 36 1 4.2969 -10.3902 -5.5689 37 1 2.9324 -9.4180 -8.8467 38 1 3.2266 -10.8384 -7.9991 39 1 4.1740 -5.1927 -0.9221 40 1 3.4024 -5.6713 -2.4560 41 1 1.5111 -4.1645 -2.0233 42 1 3.0275 -3.2424 -1.8811 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997368027.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:43 Heat of formation + Delta-G solvation = 24.005069 kcal Electronic energy + Delta-G solvation = -26882.623191 eV Core-core repulsion = 22899.614854 eV Total energy + Delta-G solvation = -3983.008337 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.154 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.32983 -40.97596 -40.42575 -38.67189 -36.22242 -35.60113 -34.76859 -33.81764 -32.47438 -31.66773 -30.96666 -29.47938 -26.78762 -25.08596 -24.50003 -23.84733 -23.32114 -22.07498 -21.56189 -20.45634 -19.21261 -18.89548 -18.30105 -17.87091 -17.41879 -17.01737 -16.77757 -16.66690 -16.26994 -15.80231 -15.74552 -15.47845 -15.31726 -15.09442 -14.81298 -14.64180 -14.44753 -13.94125 -13.72684 -13.38032 -13.24450 -12.94499 -12.84101 -12.71581 -12.30231 -12.15887 -12.10176 -11.95318 -11.78589 -11.51548 -11.30206 -11.14470 -11.04560 -10.75376 -10.71974 -10.36044 -9.64895 -8.99636 -7.92943 -5.21598 0.12146 0.61044 0.99812 1.46424 1.47061 1.49295 1.57419 1.94346 2.21043 2.37687 2.57107 3.09803 3.40267 3.43688 3.67776 3.83265 3.86477 3.95683 3.97224 4.09749 4.17601 4.19407 4.32171 4.39578 4.41984 4.58115 4.64634 4.84612 4.89581 5.03582 5.04608 5.21281 5.32570 5.35120 5.49195 5.53893 5.66498 5.81112 6.28791 6.33170 6.36851 6.83573 7.09817 7.25196 7.34616 8.10292 8.34135 9.30872 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016611 B = 0.002728 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.247918 B =10259.657597 C =11416.070911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.080 4.080 3 Si 0.972 3.028 4 H -0.290 1.290 5 H -0.296 1.296 6 H -0.267 1.267 7 C -0.235 4.235 8 H 0.077 0.923 9 N -0.738 5.738 10 C 0.173 3.827 11 C -0.127 4.127 12 C 0.123 3.877 13 N -0.595 5.595 14 C 0.603 3.397 15 O -0.567 6.567 16 C -0.126 4.126 17 C 0.119 3.881 18 N -0.345 5.345 19 C 0.095 3.905 20 C 0.497 3.503 21 N -0.826 5.826 22 O -0.583 6.583 23 N -0.071 5.071 24 N -0.227 5.227 25 C 0.099 3.901 26 C -0.137 4.137 27 H 0.250 0.750 28 H 0.370 0.630 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.249 0.751 35 H 0.192 0.808 36 H 0.167 0.833 37 H 0.411 0.589 38 H 0.425 0.575 39 H 0.078 0.922 40 H 0.122 0.878 41 H 0.036 0.964 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.385 -31.984 -13.525 35.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.272 4.272 3 Si 0.802 3.198 4 H -0.217 1.217 5 H -0.222 1.222 6 H -0.192 1.192 7 C -0.367 4.367 8 H 0.095 0.905 9 N -0.377 5.377 10 C 0.065 3.935 11 C -0.166 4.166 12 C 0.001 3.999 13 N -0.325 5.325 14 C 0.390 3.610 15 O -0.447 6.447 16 C -0.265 4.265 17 C -0.038 4.038 18 N -0.130 5.130 19 C -0.028 4.028 20 C 0.281 3.719 21 N -0.392 5.392 22 O -0.462 6.462 23 N -0.050 5.050 24 N -0.101 5.101 25 C -0.024 4.024 26 C -0.178 4.178 27 H 0.058 0.942 28 H 0.202 0.798 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.098 0.902 32 H 0.114 0.886 33 H 0.107 0.893 34 H 0.265 0.735 35 H 0.209 0.791 36 H 0.185 0.815 37 H 0.242 0.758 38 H 0.258 0.742 39 H 0.096 0.904 40 H 0.139 0.861 41 H 0.055 0.945 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 9.149 -30.702 -13.741 34.859 hybrid contribution -0.968 0.783 -0.218 1.264 sum 8.181 -29.919 -13.959 34.013 Atomic orbital electron populations 1.69831 1.06667 1.25917 1.59938 1.25574 0.96378 1.01126 1.04086 0.85147 0.77814 0.79589 0.77292 1.21738 1.22231 1.19178 1.19641 0.91463 0.85155 1.40433 0.90490 1.42664 1.05379 1.01048 1.88587 1.20433 0.94507 0.84904 0.93642 1.22050 0.98409 0.94437 1.01668 1.21653 0.99366 0.96732 0.82180 1.48004 1.53108 1.14539 1.16882 1.17022 0.79864 0.81409 0.82700 1.90742 1.37876 1.50976 1.65092 1.21467 1.05229 0.98705 1.01060 1.23876 0.95037 0.99368 0.85488 1.50115 1.27085 1.19303 1.16486 1.22419 1.11480 0.88745 0.80131 1.20893 0.76191 0.87311 0.87549 1.43561 1.74014 1.13794 1.07791 1.90924 1.50205 1.17312 1.87745 1.82050 1.15601 0.94446 1.12950 1.74432 1.11508 1.22220 1.01900 1.22528 0.93303 0.86335 1.00267 1.22520 0.99215 0.96509 0.99581 0.94151 0.79815 0.93073 0.93230 0.90200 0.88574 0.89295 0.73497 0.79129 0.81550 0.75758 0.74166 0.90390 0.86073 0.94513 0.92375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.77 13.06 21.65 0.28 -61.49 16 2 C -0.08 -4.75 5.50 84.86 0.47 -4.28 16 3 Si 0.97 47.81 29.55 68.60 2.03 49.84 16 4 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 5 H -0.30 -14.58 7.11 99.48 0.71 -13.88 16 6 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 7 C -0.24 -13.49 9.93 84.04 0.83 -12.66 16 8 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 9 N -0.74 -39.03 5.12 -322.80 -1.65 -40.69 16 10 C 0.17 7.23 2.73 45.02 0.12 7.35 16 11 C -0.13 -4.48 5.55 30.67 0.17 -4.31 16 12 C 0.12 3.64 6.44 86.36 0.56 4.19 16 13 N -0.59 -18.69 2.97 -821.83 -2.44 -21.13 16 14 C 0.60 18.50 7.67 86.69 0.67 19.16 16 15 O -0.57 -18.63 16.30 -4.03 -0.07 -18.69 16 16 C -0.13 -3.36 6.69 40.81 0.27 -3.09 16 17 C 0.12 1.98 11.28 83.85 0.95 2.93 16 18 N -0.34 -5.52 3.40 -350.83 -1.19 -6.71 16 19 C 0.10 0.27 7.02 85.63 0.60 0.87 16 20 C 0.50 5.29 8.14 87.66 0.71 6.01 16 21 N -0.83 -0.77 8.87 -173.53 -1.54 -2.31 16 22 O -0.58 -15.23 16.58 -3.03 -0.05 -15.28 16 23 N -0.07 -1.91 12.90 37.02 0.48 -1.43 16 24 N -0.23 -6.78 8.79 -50.00 -0.44 -7.22 16 25 C 0.10 3.25 6.11 86.51 0.53 3.78 16 26 C -0.14 -5.44 5.67 30.82 0.17 -5.26 16 27 H 0.25 15.38 8.31 -92.71 -0.77 14.61 16 28 H 0.37 21.19 7.80 -92.71 -0.72 20.47 16 29 H 0.05 2.11 8.08 -2.39 -0.02 2.09 16 30 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 32 H 0.10 2.76 7.00 -2.39 -0.02 2.74 16 33 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.25 1.71 8.06 -2.91 -0.02 1.69 16 35 H 0.19 -1.56 8.08 -2.38 -0.02 -1.58 16 36 H 0.17 -0.66 8.14 -2.38 -0.02 -0.68 16 37 H 0.41 0.88 8.93 -92.71 -0.83 0.05 16 38 H 0.43 -3.50 8.83 -92.71 -0.82 -4.32 16 39 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 40 H 0.12 4.10 4.12 -36.49 -0.15 3.95 16 41 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.06 2.46 8.14 -2.38 -0.02 2.44 16 Total: -1.00 -92.98 355.63 0.05 -92.93 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: -1.41 Total: 17.48 kcal Atomic # 6 Polarization: 8.65 SS G_CDS: 6.05 Total: 14.70 kcal Atomic # 7 Polarization: -134.48 SS G_CDS: -6.50 Total: -140.98 kcal Atomic # 8 Polarization: -33.85 SS G_CDS: -0.12 Total: -33.97 kcal Atomic # 14 Polarization: 47.81 SS G_CDS: 2.03 Total: 49.84 kcal Total: -92.98 0.05 -92.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997368027.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.931 kcal (2) G-P(sol) polarization free energy of solvation -92.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds