Wall clock time and date at job start Fri Apr 10 2020 18:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34776 * 119.99472 * 2 1 4 4 O 1.21597 * 119.99401 * 176.19488 * 3 2 1 5 5 C 1.47518 * 120.00418 * 356.18719 * 3 2 1 6 6 C 1.36599 * 125.77238 * 185.91019 * 5 3 2 7 7 N 1.34810 * 106.84107 * 179.89927 * 6 5 3 8 8 C 1.46497 * 126.59743 * 180.12910 * 7 6 5 9 9 C 1.50695 * 109.47209 * 125.24480 * 8 7 6 10 10 N 1.34782 * 120.00209 * 180.02562 * 9 8 7 11 11 O 1.21284 * 119.99814 * 0.02562 * 9 8 7 12 12 N 1.40209 * 106.80947 * 0.35992 * 7 6 5 13 13 N 1.28755 * 108.36992 * 359.76616 * 12 7 6 14 14 C 1.46496 * 120.00112 * 179.97438 * 2 1 3 15 15 C 1.53783 * 113.61383 * 59.99904 * 14 2 1 16 16 C 1.53781 * 87.08223 * 219.93328 * 15 14 2 17 17 N 1.46493 * 113.61882 * 270.80104 * 16 15 14 18 18 C 1.36932 * 120.00271 * 203.47265 * 17 16 15 19 19 H 1.08004 * 120.00050 * 359.97438 * 18 17 16 20 20 C 1.38820 * 120.00025 * 180.02562 * 18 17 16 21 21 N 1.31620 * 119.99836 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00025 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47223 * 89.99234 * 22 20 18 24 24 H 1.48503 * 109.47180 * 209.99994 * 22 20 18 25 25 H 1.48512 * 109.46965 * 329.99604 * 22 20 18 26 26 C 1.53789 * 87.17282 * 25.39384 * 16 15 14 27 27 H 1.08999 * 109.46983 * 275.70157 * 1 2 3 28 28 H 1.08994 * 109.47296 * 35.70608 * 1 2 3 29 29 H 1.08999 * 109.46855 * 155.70233 * 1 2 3 30 30 H 1.07999 * 126.57870 * 0.03832 * 6 5 3 31 31 H 1.09000 * 109.47516 * 245.24757 * 8 7 6 32 32 H 1.09003 * 109.47112 * 5.24424 * 8 7 6 33 33 H 0.97002 * 119.99516 * 0.02562 * 10 9 8 34 34 H 0.96990 * 120.00101 * 179.97438 * 10 9 8 35 35 H 1.08997 * 112.85237 * 191.19783 * 14 2 1 36 36 H 1.09003 * 113.61364 * 105.38762 * 15 14 2 37 37 H 1.08995 * 113.61605 * 334.48456 * 15 14 2 38 38 H 1.09006 * 113.61339 * 139.98158 * 16 15 14 39 39 H 0.97003 * 120.00089 * 23.47049 * 17 16 15 40 40 H 0.97004 * 119.99518 * 180.02562 * 21 20 18 41 41 H 1.09000 * 113.61410 * 89.15688 * 26 16 15 42 42 H 1.09000 * 113.61095 * 220.06019 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3528 1.1684 0.0699 5 6 1.4037 2.4434 -0.0849 6 6 1.9659 3.6822 -0.2081 7 7 0.9514 4.5688 -0.2534 8 6 1.0678 6.0233 -0.3842 9 6 0.2541 6.4882 -1.5643 10 7 0.2118 7.7979 -1.8797 11 8 -0.3627 5.6838 -2.2302 12 7 -0.2364 3.8317 -0.1457 13 7 0.0676 2.5843 -0.0484 14 6 2.1976 -1.2687 0.0006 15 6 1.8954 -2.1550 -1.2193 16 6 1.9153 -3.3529 -0.2552 17 7 3.2424 -3.9503 -0.0886 18 6 3.3610 -5.2523 0.3184 19 1 2.4761 -5.8388 0.5169 20 6 4.6187 -5.8182 0.4768 21 7 5.6971 -5.1034 0.2353 22 14 4.7805 -7.5947 1.0312 23 1 4.8030 -8.4842 -0.1576 24 1 6.0413 -7.7610 1.7980 25 1 3.6256 -7.9510 1.8943 26 6 1.5405 -2.3634 0.8609 27 1 -0.3633 0.1021 1.0226 28 1 -0.3633 0.8344 -0.5997 29 1 -0.3633 -0.9366 -0.4229 30 1 3.0207 3.9078 -0.2616 31 1 0.6976 6.5005 0.5231 32 1 2.1134 6.2920 -0.5353 33 1 0.7055 8.4411 -1.3473 34 1 -0.3116 8.0971 -2.6395 35 1 3.2625 -1.1425 0.1956 36 1 2.6992 -2.1736 -1.9553 37 1 0.9178 -1.9681 -1.6634 38 1 1.1412 -4.0922 -0.4614 39 1 4.0373 -3.4235 -0.2666 40 1 6.5760 -5.4990 0.3456 41 1 0.4656 -2.2336 0.9865 42 1 2.0582 -2.5501 1.8018 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999871590.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:52 Heat of formation + Delta-G solvation = 85.812327 kcal Electronic energy + Delta-G solvation = -26472.056332 eV Core-core repulsion = 22491.728158 eV Total energy + Delta-G solvation = -3980.328173 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.154 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.46830 -40.10819 -39.68370 -37.82228 -35.15578 -34.54686 -34.31885 -32.86550 -31.12771 -29.77975 -28.92780 -26.83349 -25.07714 -24.83991 -23.53936 -23.23863 -22.08251 -21.41944 -19.90191 -18.45771 -18.12470 -17.85849 -17.35970 -17.06519 -16.48914 -16.33528 -15.91687 -15.60650 -14.94558 -14.86534 -14.68301 -14.28427 -14.10223 -13.84221 -13.40890 -13.03506 -12.84160 -12.69166 -12.45347 -12.10597 -11.90812 -11.79136 -11.41559 -11.22539 -10.89278 -10.80206 -10.68919 -10.45936 -10.41285 -10.14064 -10.09880 -9.91315 -9.61749 -9.51231 -9.43843 -8.84857 -8.24979 -6.94442 -5.73594 -3.03270 0.87926 1.54528 1.67243 1.83152 2.67231 3.16834 3.35575 3.46909 3.51751 3.53756 3.82084 3.98775 4.08731 4.20763 4.48011 4.61298 4.76551 5.01503 5.20869 5.30547 5.40219 5.50293 5.51560 5.54062 5.86543 5.90908 5.95140 6.06407 6.07630 6.20043 6.22006 6.34502 6.51420 6.54143 6.68443 6.80302 6.90048 7.12258 7.48060 7.60796 7.74930 7.78780 8.31758 8.44794 9.55389 10.12762 10.47056 11.48597 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.039058 B = 0.002138 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.718687 B =13095.671113 C =13427.169657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.585 5.585 3 C 0.596 3.404 4 O -0.540 6.540 5 C -0.089 4.089 6 C 0.092 3.908 7 N -0.359 5.359 8 C 0.104 3.896 9 C 0.504 3.496 10 N -0.850 5.850 11 O -0.507 6.507 12 N -0.041 5.041 13 N -0.202 5.202 14 C 0.124 3.876 15 C -0.167 4.167 16 C 0.172 3.828 17 N -0.706 5.706 18 C -0.243 4.243 19 H 0.073 0.927 20 C -0.013 4.013 21 N -0.930 5.930 22 Si 0.909 3.091 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.282 1.282 26 C -0.180 4.180 27 H 0.055 0.945 28 H 0.094 0.906 29 H 0.071 0.929 30 H 0.206 0.794 31 H 0.130 0.870 32 H 0.136 0.864 33 H 0.404 0.596 34 H 0.409 0.591 35 H 0.119 0.881 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.386 0.614 40 H 0.256 0.744 41 H 0.073 0.927 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.966 30.241 -1.485 32.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.315 5.315 3 C 0.381 3.619 4 O -0.417 6.417 5 C -0.226 4.226 6 C -0.063 4.063 7 N -0.144 5.144 8 C -0.022 4.022 9 C 0.285 3.715 10 N -0.416 5.416 11 O -0.380 6.380 12 N -0.021 5.021 13 N -0.077 5.077 14 C 0.022 3.978 15 C -0.207 4.207 16 C 0.059 3.941 17 N -0.344 5.344 18 C -0.374 4.374 19 H 0.091 0.909 20 C -0.209 4.209 21 N -0.578 5.578 22 Si 0.740 3.260 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.207 1.207 26 C -0.222 4.222 27 H 0.074 0.926 28 H 0.112 0.888 29 H 0.090 0.910 30 H 0.223 0.777 31 H 0.147 0.853 32 H 0.154 0.846 33 H 0.232 0.768 34 H 0.241 0.759 35 H 0.137 0.863 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.221 0.779 40 H 0.066 0.934 41 H 0.092 0.908 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.167 29.441 -1.666 31.900 hybrid contribution 1.464 0.031 0.200 1.478 sum -10.703 29.473 -1.466 31.390 Atomic orbital electron populations 1.22126 0.78869 1.03627 1.02497 1.47764 1.07474 1.05493 1.70722 1.16856 0.86102 0.81868 0.77037 1.90819 1.12691 1.86759 1.51383 1.21547 0.89919 0.95208 1.15962 1.23322 0.96022 0.88617 0.98384 1.49792 1.06616 1.07238 1.50798 1.21704 1.03869 0.76567 1.00045 1.20357 0.82116 0.83253 0.85733 1.43699 1.54387 1.07685 1.35859 1.90915 1.42760 1.53147 1.51179 1.82110 1.03369 0.96478 1.20127 1.74791 1.12650 1.09471 1.10754 1.22860 0.97757 0.79350 0.97858 1.23947 1.01614 0.97570 0.97579 1.20914 0.89825 0.91320 0.92058 1.42211 1.01037 1.11523 1.79674 1.19277 0.92341 0.88073 1.37701 0.90936 1.24785 0.95432 0.98339 1.02351 1.69677 0.97080 1.35909 1.55132 0.86164 0.76997 0.84727 0.78120 1.21712 1.21800 1.20718 1.24330 0.99580 0.97429 1.00887 0.92644 0.88803 0.91041 0.77710 0.85276 0.84613 0.76751 0.75855 0.86284 0.91058 0.90302 0.91461 0.77932 0.93433 0.90819 0.90890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.97 8.35 59.85 0.50 1.47 16 2 N -0.58 -9.45 3.08 -174.13 -0.54 -9.99 16 3 C 0.60 9.91 7.67 -12.48 -0.10 9.82 16 4 O -0.54 -10.41 16.35 5.28 0.09 -10.32 16 5 C -0.09 -1.22 6.70 -83.55 -0.56 -1.78 16 6 C 0.09 0.91 11.28 -16.84 -0.19 0.72 16 7 N -0.36 -3.24 3.41 -62.25 -0.21 -3.45 16 8 C 0.10 0.34 7.02 -5.20 -0.04 0.31 16 9 C 0.50 2.90 8.14 -10.99 -0.09 2.81 16 10 N -0.85 -1.07 8.87 31.22 0.28 -0.79 16 11 O -0.51 -6.09 16.57 5.55 0.09 -5.99 16 12 N -0.04 -0.53 12.89 60.35 0.78 0.25 16 13 N -0.20 -2.83 8.79 32.85 0.29 -2.54 16 14 C 0.12 2.25 4.10 -67.02 -0.27 1.97 16 15 C -0.17 -2.97 7.34 -25.92 -0.19 -3.16 16 16 C 0.17 3.50 4.55 -67.12 -0.31 3.20 16 17 N -0.71 -18.10 5.31 -52.63 -0.28 -18.38 16 18 C -0.24 -6.83 9.97 -15.06 -0.15 -6.98 16 19 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 20 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 21 N -0.93 -28.59 13.06 55.49 0.72 -27.86 16 22 Si 0.91 22.66 29.55 -169.99 -5.02 17.63 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 25 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 26 C -0.18 -3.27 7.29 -25.82 -0.19 -3.46 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.09 1.27 5.25 -51.93 -0.27 1.00 16 29 H 0.07 0.88 6.13 -51.93 -0.32 0.56 16 30 H 0.21 1.33 8.06 -52.49 -0.42 0.91 16 31 H 0.13 0.06 8.14 -51.93 -0.42 -0.36 16 32 H 0.14 -0.12 8.08 -51.93 -0.42 -0.54 16 33 H 0.40 -1.02 8.83 -40.82 -0.36 -1.38 16 34 H 0.41 0.51 8.93 -40.82 -0.36 0.15 16 35 H 0.12 2.51 7.21 -51.93 -0.37 2.13 16 36 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 37 H 0.08 1.22 7.00 -51.93 -0.36 0.85 16 38 H 0.07 1.34 8.11 -51.93 -0.42 0.92 16 39 H 0.39 10.61 7.90 -40.82 -0.32 10.29 16 40 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 41 H 0.07 1.15 6.62 -51.93 -0.34 0.81 16 42 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 LS Contribution 357.94 15.07 5.39 5.39 Total: -1.00 -39.99 357.94 -5.31 -45.30 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -5.22 Total: 6.30 kcal Atomic # 6 Polarization: 6.13 SS G_CDS: -1.68 Total: 4.45 kcal Atomic # 7 Polarization: -63.80 SS G_CDS: 1.04 Total: -62.76 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: 0.18 Total: -16.32 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -39.99 -5.31 -45.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999871590.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.110 kcal (2) G-P(sol) polarization free energy of solvation -39.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds