Wall clock time and date at job start Fri Apr 10 2020 18:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34776 * 119.99472 * 2 1 4 4 O 1.21597 * 119.99401 * 176.19488 * 3 2 1 5 5 C 1.47518 * 120.00418 * 356.18719 * 3 2 1 6 6 C 1.36599 * 125.77238 * 185.91019 * 5 3 2 7 7 N 1.34810 * 106.84107 * 179.89927 * 6 5 3 8 8 C 1.46497 * 126.59743 * 180.12910 * 7 6 5 9 9 C 1.50695 * 109.47209 * 125.24480 * 8 7 6 10 10 N 1.34782 * 120.00209 * 180.02562 * 9 8 7 11 11 O 1.21284 * 119.99814 * 0.02562 * 9 8 7 12 12 N 1.40209 * 106.80947 * 0.35992 * 7 6 5 13 13 N 1.28755 * 108.36992 * 359.76616 * 12 7 6 14 14 C 1.46496 * 120.00112 * 179.97438 * 2 1 3 15 15 C 1.53783 * 113.61383 * 59.99904 * 14 2 1 16 16 C 1.53781 * 87.08223 * 219.93328 * 15 14 2 17 17 N 1.46493 * 113.61882 * 270.80104 * 16 15 14 18 18 C 1.36932 * 120.00271 * 203.47265 * 17 16 15 19 19 H 1.08004 * 120.00050 * 359.97438 * 18 17 16 20 20 C 1.38820 * 120.00025 * 180.02562 * 18 17 16 21 21 N 1.31620 * 119.99836 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00025 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47223 * 89.99234 * 22 20 18 24 24 H 1.48503 * 109.47180 * 209.99994 * 22 20 18 25 25 H 1.48512 * 109.46965 * 329.99604 * 22 20 18 26 26 C 1.53789 * 87.17282 * 25.39384 * 16 15 14 27 27 H 1.08999 * 109.46983 * 275.70157 * 1 2 3 28 28 H 1.08994 * 109.47296 * 35.70608 * 1 2 3 29 29 H 1.08999 * 109.46855 * 155.70233 * 1 2 3 30 30 H 1.07999 * 126.57870 * 0.03832 * 6 5 3 31 31 H 1.09000 * 109.47516 * 245.24757 * 8 7 6 32 32 H 1.09003 * 109.47112 * 5.24424 * 8 7 6 33 33 H 0.97002 * 119.99516 * 0.02562 * 10 9 8 34 34 H 0.96990 * 120.00101 * 179.97438 * 10 9 8 35 35 H 1.08997 * 112.85237 * 191.19783 * 14 2 1 36 36 H 1.09003 * 113.61364 * 105.38762 * 15 14 2 37 37 H 1.08995 * 113.61605 * 334.48456 * 15 14 2 38 38 H 1.09006 * 113.61339 * 139.98158 * 16 15 14 39 39 H 0.97003 * 120.00089 * 23.47049 * 17 16 15 40 40 H 0.97004 * 119.99518 * 180.02562 * 21 20 18 41 41 H 1.09000 * 113.61410 * 89.15688 * 26 16 15 42 42 H 1.09000 * 113.61095 * 220.06019 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3528 1.1684 0.0699 5 6 1.4037 2.4434 -0.0849 6 6 1.9659 3.6822 -0.2081 7 7 0.9514 4.5688 -0.2534 8 6 1.0678 6.0233 -0.3842 9 6 0.2541 6.4882 -1.5643 10 7 0.2118 7.7979 -1.8797 11 8 -0.3627 5.6838 -2.2302 12 7 -0.2364 3.8317 -0.1457 13 7 0.0676 2.5843 -0.0484 14 6 2.1976 -1.2687 0.0006 15 6 1.8954 -2.1550 -1.2193 16 6 1.9153 -3.3529 -0.2552 17 7 3.2424 -3.9503 -0.0886 18 6 3.3610 -5.2523 0.3184 19 1 2.4761 -5.8388 0.5169 20 6 4.6187 -5.8182 0.4768 21 7 5.6971 -5.1034 0.2353 22 14 4.7805 -7.5947 1.0312 23 1 4.8030 -8.4842 -0.1576 24 1 6.0413 -7.7610 1.7980 25 1 3.6256 -7.9510 1.8943 26 6 1.5405 -2.3634 0.8609 27 1 -0.3633 0.1021 1.0226 28 1 -0.3633 0.8344 -0.5997 29 1 -0.3633 -0.9366 -0.4229 30 1 3.0207 3.9078 -0.2616 31 1 0.6976 6.5005 0.5231 32 1 2.1134 6.2920 -0.5353 33 1 0.7055 8.4411 -1.3473 34 1 -0.3116 8.0971 -2.6395 35 1 3.2625 -1.1425 0.1956 36 1 2.6992 -2.1736 -1.9553 37 1 0.9178 -1.9681 -1.6634 38 1 1.1412 -4.0922 -0.4614 39 1 4.0373 -3.4235 -0.2666 40 1 6.5760 -5.4990 0.3456 41 1 0.4656 -2.2336 0.9865 42 1 2.0582 -2.5501 1.8018 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999871590.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:51 Heat of formation + Delta-G solvation = 51.364362 kcal Electronic energy + Delta-G solvation = -26473.550107 eV Core-core repulsion = 22491.728158 eV Total energy + Delta-G solvation = -3981.821949 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.154 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.31112 -41.17140 -40.46665 -39.28133 -36.33250 -35.58360 -34.81069 -34.60578 -32.14956 -31.59576 -29.56972 -28.00465 -26.64453 -26.34991 -25.23513 -23.98880 -23.34067 -22.01502 -20.93543 -19.68000 -19.40380 -18.98914 -18.29913 -17.83334 -17.69359 -17.06493 -16.87787 -16.66402 -16.34963 -15.84475 -15.77999 -15.61301 -15.41761 -14.92883 -14.74248 -14.34701 -14.04362 -13.85353 -13.53417 -13.38530 -13.33597 -13.19335 -12.92883 -12.75787 -12.48290 -12.14026 -12.03339 -11.86707 -11.73179 -11.57040 -11.27796 -11.04462 -10.99646 -10.85736 -10.73358 -10.36435 -9.55621 -9.02063 -7.93131 -5.23217 0.10195 0.63319 0.97510 1.46162 1.48988 1.51351 1.59751 1.96296 2.18298 2.37428 2.57273 3.11759 3.38263 3.43850 3.63180 3.72702 3.86192 3.88189 3.90516 3.97350 4.09332 4.27202 4.28209 4.35774 4.37926 4.54537 4.78839 4.80856 4.85466 4.98414 5.12827 5.19501 5.25601 5.31745 5.36917 5.54841 5.70044 5.81701 6.28227 6.35890 6.36873 6.84497 7.09797 7.24504 7.33422 8.08806 8.31510 9.30371 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.039058 B = 0.002138 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.718687 B =13095.671113 C =13427.169657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.586 5.586 3 C 0.592 3.408 4 O -0.577 6.577 5 C -0.122 4.122 6 C 0.115 3.885 7 N -0.345 5.345 8 C 0.094 3.906 9 C 0.500 3.500 10 N -0.825 5.825 11 O -0.581 6.581 12 N -0.068 5.068 13 N -0.218 5.218 14 C 0.129 3.871 15 C -0.149 4.149 16 C 0.156 3.844 17 N -0.722 5.722 18 C -0.242 4.242 19 H 0.083 0.917 20 C -0.080 4.080 21 N -0.971 5.971 22 Si 0.978 3.022 23 H -0.286 1.286 24 H -0.298 1.298 25 H -0.267 1.267 26 C -0.161 4.161 27 H 0.062 0.938 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.242 0.758 31 H 0.166 0.834 32 H 0.188 0.812 33 H 0.425 0.575 34 H 0.411 0.589 35 H 0.082 0.918 36 H 0.054 0.946 37 H 0.111 0.889 38 H 0.078 0.922 39 H 0.372 0.628 40 H 0.251 0.749 41 H 0.108 0.892 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.250 32.248 -1.100 34.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.316 5.316 3 C 0.379 3.621 4 O -0.457 6.457 5 C -0.260 4.260 6 C -0.042 4.042 7 N -0.129 5.129 8 C -0.029 4.029 9 C 0.283 3.717 10 N -0.391 5.391 11 O -0.459 6.459 12 N -0.048 5.048 13 N -0.092 5.092 14 C 0.025 3.975 15 C -0.188 4.188 16 C 0.045 3.955 17 N -0.360 5.360 18 C -0.374 4.374 19 H 0.101 0.899 20 C -0.272 4.272 21 N -0.622 5.622 22 Si 0.807 3.193 23 H -0.213 1.213 24 H -0.225 1.225 25 H -0.192 1.192 26 C -0.203 4.203 27 H 0.081 0.919 28 H 0.113 0.887 29 H 0.105 0.895 30 H 0.258 0.742 31 H 0.183 0.817 32 H 0.205 0.795 33 H 0.258 0.742 34 H 0.243 0.757 35 H 0.101 0.899 36 H 0.073 0.927 37 H 0.130 0.870 38 H 0.096 0.904 39 H 0.204 0.796 40 H 0.059 0.941 41 H 0.126 0.874 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -13.536 31.557 -1.264 34.361 hybrid contribution 1.807 -0.327 0.056 1.837 sum -11.730 31.230 -1.208 33.382 Atomic orbital electron populations 1.22247 0.76950 1.04487 1.03159 1.47786 1.08490 1.04706 1.70591 1.17255 0.85870 0.82866 0.76067 1.90787 1.14294 1.87451 1.53189 1.21321 0.90310 0.95137 1.19267 1.23807 0.97423 0.87466 0.95527 1.50071 1.05156 1.09153 1.48564 1.22402 1.06769 0.73283 1.00477 1.20794 0.81419 0.83800 0.85659 1.43556 1.53302 1.06743 1.35535 1.90899 1.46069 1.55160 1.53794 1.82008 1.05305 0.96459 1.21058 1.74731 1.12817 1.10374 1.11319 1.22469 0.96216 0.80698 0.98074 1.23817 1.02728 0.95649 0.96635 1.21188 0.87770 0.92444 0.94055 1.42392 1.02571 1.11011 1.80007 1.19718 0.92623 0.89075 1.35962 0.89924 1.25655 0.95273 1.02626 1.03606 1.69852 0.97314 1.37722 1.57303 0.85075 0.76889 0.79715 0.77663 1.21340 1.22472 1.19158 1.24147 1.01275 0.96091 0.98755 0.91939 0.88703 0.89517 0.74235 0.81659 0.79532 0.74220 0.75655 0.89937 0.92714 0.87035 0.90366 0.79636 0.94065 0.87376 0.93325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.88 8.35 127.77 1.07 2.94 16 2 N -0.59 -18.83 3.08 -823.07 -2.54 -21.37 16 3 C 0.59 19.85 7.67 86.69 0.66 20.52 16 4 O -0.58 -22.87 16.35 -4.02 -0.07 -22.94 16 5 C -0.12 -3.28 6.70 40.82 0.27 -3.01 16 6 C 0.11 2.04 11.28 83.85 0.95 2.98 16 7 N -0.34 -5.39 3.41 -350.84 -1.20 -6.58 16 8 C 0.09 0.25 7.02 85.63 0.60 0.85 16 9 C 0.50 4.62 8.14 87.65 0.71 5.34 16 10 N -0.83 0.26 8.87 -173.53 -1.54 -1.28 16 11 O -0.58 -13.68 16.57 -3.04 -0.05 -13.73 16 12 N -0.07 -1.70 12.89 37.02 0.48 -1.22 16 13 N -0.22 -5.99 8.79 -50.00 -0.44 -6.43 16 14 C 0.13 4.73 4.10 45.58 0.19 4.92 16 15 C -0.15 -5.20 7.34 31.12 0.23 -4.97 16 16 C 0.16 6.30 4.55 45.52 0.21 6.51 16 17 N -0.72 -37.82 5.31 -320.43 -1.70 -39.52 16 18 C -0.24 -13.71 9.97 84.04 0.84 -12.87 16 19 H 0.08 4.41 7.83 -2.91 -0.02 4.39 16 20 C -0.08 -4.69 5.50 84.86 0.47 -4.22 16 21 N -0.97 -61.50 13.06 21.65 0.28 -61.21 16 22 Si 0.98 47.10 29.55 68.60 2.03 49.13 16 23 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 24 H -0.30 -14.52 7.11 99.48 0.71 -13.82 16 25 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 26 C -0.16 -5.76 7.29 31.19 0.23 -5.53 16 27 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.09 2.49 5.25 -2.39 -0.01 2.48 16 29 H 0.09 1.90 6.13 -2.39 -0.01 1.89 16 30 H 0.24 2.33 8.06 -2.91 -0.02 2.31 16 31 H 0.17 -0.66 8.14 -2.39 -0.02 -0.68 16 32 H 0.19 -1.39 8.08 -2.39 -0.02 -1.41 16 33 H 0.43 -3.80 8.83 -92.71 -0.82 -4.62 16 34 H 0.41 0.19 8.93 -92.72 -0.83 -0.64 16 35 H 0.08 3.68 7.21 -2.39 -0.02 3.66 16 36 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.11 3.18 7.00 -2.39 -0.02 3.16 16 38 H 0.08 2.98 8.11 -2.38 -0.02 2.97 16 39 H 0.37 21.34 7.90 -92.71 -0.73 20.61 16 40 H 0.25 15.37 8.31 -92.71 -0.77 14.60 16 41 H 0.11 3.11 6.62 -2.39 -0.02 3.10 16 42 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -92.75 357.94 0.41 -92.34 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: -1.27 Total: 19.37 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: 6.42 Total: 13.45 kcal Atomic # 7 Polarization: -130.97 SS G_CDS: -6.66 Total: -137.63 kcal Atomic # 8 Polarization: -36.56 SS G_CDS: -0.12 Total: -36.67 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.13 kcal Total: -92.75 0.41 -92.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999871590.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.709 kcal (2) G-P(sol) polarization free energy of solvation -92.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds