Wall clock time and date at job start Fri Apr 10 2020 18:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99910 * 2 1 4 4 H 1.48495 * 109.47120 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47420 * 300.00414 * 3 2 1 6 6 H 1.48501 * 109.47065 * 60.00128 * 3 2 1 7 7 C 1.38811 * 120.00171 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99741 * 163.05975 * 7 2 1 9 9 N 1.36933 * 119.99941 * 343.06786 * 7 2 1 10 10 C 1.46924 * 120.63026 * 331.84727 * 9 7 2 11 11 C 1.53197 * 108.77748 * 233.58922 * 10 9 7 12 12 C 1.53035 * 109.31040 * 305.36633 * 11 10 9 13 13 N 1.46499 * 109.45943 * 181.38432 * 12 11 10 14 14 C 1.34782 * 120.00221 * 154.99636 * 13 12 11 15 15 O 1.21597 * 119.99826 * 0.02562 * 14 13 12 16 16 C 1.47526 * 120.00037 * 179.97438 * 14 13 12 17 17 C 1.36598 * 125.76809 * 180.02562 * 16 14 13 18 18 N 1.34814 * 106.83416 * 179.71472 * 17 16 14 19 19 C 1.46500 * 126.58979 * 180.24051 * 18 17 16 20 20 C 1.50699 * 109.47014 * 125.00092 * 19 18 17 21 21 N 1.34778 * 120.00119 * 180.02562 * 20 19 18 22 22 O 1.21282 * 119.99998 * 0.02562 * 20 19 18 23 23 N 1.40207 * 106.81524 * 0.26420 * 18 17 16 24 24 N 1.28765 * 108.36667 * 0.02562 * 23 18 17 25 25 C 1.53035 * 109.54167 * 61.36373 * 12 11 10 26 26 C 1.46925 * 120.63424 * 151.82870 * 9 7 2 27 27 H 0.96996 * 119.99940 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.58947 * 113.79954 * 10 9 7 29 29 H 1.09000 * 109.70359 * 353.44496 * 10 9 7 30 30 H 1.09001 * 109.50033 * 185.41141 * 11 10 9 31 31 H 1.08999 * 109.51985 * 65.33058 * 11 10 9 32 32 H 1.09005 * 109.46170 * 301.35165 * 12 11 10 33 33 H 0.97004 * 120.00268 * 335.00266 * 13 12 11 34 34 H 1.07994 * 126.58155 * 359.97438 * 17 16 14 35 35 H 1.08999 * 109.47453 * 245.00146 * 19 18 17 36 36 H 1.09003 * 109.47061 * 4.99916 * 19 18 17 37 37 H 0.97003 * 120.00067 * 359.97438 * 21 20 19 38 38 H 0.97001 * 120.00095 * 180.02562 * 21 20 19 39 39 H 1.08998 * 109.49630 * 58.58233 * 25 12 11 40 40 H 1.09001 * 109.50119 * 178.68284 * 25 12 11 41 41 H 1.09000 * 109.59074 * 246.20015 * 26 9 7 42 42 H 1.08998 * 109.58433 * 6.48108 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3966 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0551 -1.2222 -0.2731 9 7 1.3702 -2.3625 0.3443 10 6 0.2262 -2.3408 1.2661 11 6 0.4977 -3.3208 2.4119 12 6 0.8122 -4.7020 1.8328 13 7 1.0399 -5.6495 2.9267 14 6 0.8365 -6.9673 2.7301 15 8 0.4645 -7.3698 1.6447 16 6 1.0664 -7.9215 3.8315 17 6 0.8984 -9.2754 3.7631 18 7 1.2186 -9.7703 4.9755 19 6 1.1950 -11.1788 5.3777 20 6 2.5449 -11.5682 5.9228 21 7 2.7592 -12.8261 6.3568 22 8 3.4385 -10.7496 5.9710 23 7 1.5779 -8.6779 5.7775 24 7 1.4728 -7.6053 5.0729 25 6 2.0675 -4.6179 0.9615 26 6 1.8139 -3.6527 -0.2007 27 1 -0.4850 0.8400 0.0004 28 1 -0.6769 -2.6410 0.7348 29 1 0.0969 -1.3358 1.6677 30 1 -0.3828 -3.3861 3.0511 31 1 1.3472 -2.9698 2.9978 32 1 -0.0279 -5.0417 1.2271 33 1 1.3370 -5.3285 3.7925 34 1 0.5755 -9.8411 2.9017 35 1 0.4368 -11.3244 6.1471 36 1 0.9593 -11.7996 4.5133 37 1 2.0444 -13.4807 6.3186 38 1 3.6280 -13.0766 6.7080 39 1 2.9025 -4.2545 1.5606 40 1 2.3044 -5.6066 0.5683 41 1 1.0403 -4.0600 -0.8516 42 1 2.7332 -3.5125 -0.7692 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001004200932.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:01 Heat of formation + Delta-G solvation = 16.203174 kcal Electronic energy + Delta-G solvation = -26486.191638 eV Core-core repulsion = 22502.844985 eV Total energy + Delta-G solvation = -3983.346653 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.154 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.26507 -40.82210 -40.41919 -38.87001 -36.03844 -35.59054 -34.75880 -33.90168 -32.22210 -31.70854 -31.08117 -29.46351 -27.02131 -24.94265 -23.98010 -23.87371 -23.16098 -22.09919 -21.27133 -20.92943 -19.44199 -18.72690 -18.30705 -17.91554 -17.27382 -17.03557 -16.76416 -16.72386 -16.23475 -15.70989 -15.62712 -15.57420 -15.34065 -15.06329 -14.76787 -14.69926 -14.22699 -14.07652 -13.79716 -13.20227 -13.12273 -13.01502 -12.62320 -12.51854 -12.36219 -12.22275 -11.99242 -11.85587 -11.82324 -11.56516 -11.38206 -11.10917 -11.04806 -10.73773 -10.55276 -10.39066 -9.97231 -8.69238 -7.86655 -5.31933 0.12183 0.64800 0.98989 1.46137 1.47951 1.49914 1.60680 2.12568 2.25960 2.37635 2.52826 3.17526 3.29277 3.48930 3.67346 3.75223 3.88489 3.94401 3.98229 4.06218 4.10035 4.34697 4.37019 4.47409 4.66540 4.68597 4.81319 4.87848 5.03013 5.06701 5.16462 5.31731 5.33302 5.48499 5.51628 5.66144 5.72398 5.81436 6.36514 6.40289 6.46731 6.91601 7.15726 7.15903 7.24753 7.85454 8.38316 9.20617 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.035469 B = 0.002155 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.223512 B =12989.747855 C =13141.252879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.051 4.051 3 Si 0.968 3.032 4 H -0.268 1.268 5 H -0.292 1.292 6 H -0.289 1.289 7 C -0.261 4.261 8 H 0.066 0.934 9 N -0.610 5.610 10 C 0.180 3.820 11 C -0.131 4.131 12 C 0.164 3.836 13 N -0.703 5.703 14 C 0.604 3.396 15 O -0.567 6.567 16 C -0.125 4.125 17 C 0.117 3.883 18 N -0.346 5.346 19 C 0.094 3.906 20 C 0.499 3.501 21 N -0.825 5.825 22 O -0.582 6.582 23 N -0.068 5.068 24 N -0.230 5.230 25 C -0.126 4.126 26 C 0.146 3.854 27 H 0.251 0.749 28 H 0.000 1.000 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.411 0.589 34 H 0.247 0.753 35 H 0.166 0.834 36 H 0.191 0.809 37 H 0.425 0.575 38 H 0.411 0.589 39 H 0.060 0.940 40 H 0.064 0.936 41 H 0.014 0.986 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.526 -31.740 13.683 34.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.246 4.246 3 Si 0.796 3.204 4 H -0.192 1.192 5 H -0.219 1.219 6 H -0.215 1.215 7 C -0.392 4.392 8 H 0.084 0.916 9 N -0.333 5.333 10 C 0.054 3.946 11 C -0.171 4.171 12 C 0.060 3.940 13 N -0.352 5.352 14 C 0.389 3.611 15 O -0.446 6.446 16 C -0.264 4.264 17 C -0.040 4.040 18 N -0.131 5.131 19 C -0.029 4.029 20 C 0.282 3.718 21 N -0.391 5.391 22 O -0.461 6.461 23 N -0.049 5.049 24 N -0.105 5.105 25 C -0.166 4.166 26 C 0.020 3.980 27 H 0.060 0.940 28 H 0.019 0.981 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.247 0.753 34 H 0.263 0.737 35 H 0.183 0.817 36 H 0.208 0.792 37 H 0.258 0.742 38 H 0.243 0.757 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.032 0.968 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.030 -30.863 14.269 34.002 hybrid contribution 0.208 0.551 -0.516 0.783 sum 0.238 -30.312 13.753 33.287 Atomic orbital electron populations 1.70182 1.06604 1.25853 1.55404 1.25809 0.96093 1.01483 1.01216 0.85199 0.78564 0.79821 0.76791 1.19238 1.21944 1.21525 1.19536 0.92839 0.85883 1.40902 0.91599 1.44349 1.35968 1.02285 1.50725 1.20552 0.87914 0.97565 0.88595 1.22285 1.01804 0.93902 0.99095 1.20746 0.97644 0.88065 0.87589 1.45962 1.67430 1.05837 1.15964 1.17001 0.76534 0.81923 0.85612 1.90780 1.49098 1.78839 1.25899 1.21457 1.16662 0.94423 0.93903 1.23887 0.95571 0.93936 0.90564 1.50122 1.44634 1.09485 1.08874 1.22413 0.97050 0.75366 1.08039 1.20839 0.89907 0.83229 0.77811 1.43558 1.19439 1.10943 1.65174 1.90907 1.46837 1.51827 1.56539 1.82012 1.19951 0.87154 1.15771 1.74640 1.10910 1.21498 1.03423 1.22202 0.97532 0.99037 0.97819 1.20961 0.97584 0.85745 0.93696 0.94013 0.98147 0.91913 0.90558 0.91714 0.91173 0.75275 0.73690 0.81667 0.79233 0.74181 0.75693 0.92152 0.91704 0.96759 0.92351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.96 11.19 21.65 0.24 -55.72 16 2 C -0.05 -2.88 4.92 84.86 0.42 -2.46 16 3 Si 0.97 45.68 29.59 68.60 2.03 47.71 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 6 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 7 C -0.26 -14.72 9.58 84.03 0.81 -13.92 16 8 H 0.07 3.63 7.88 -2.91 -0.02 3.61 16 9 N -0.61 -31.65 2.99 -699.11 -2.09 -33.74 16 10 C 0.18 8.87 5.30 86.36 0.46 9.33 16 11 C -0.13 -5.04 5.55 30.67 0.17 -4.87 16 12 C 0.16 5.94 2.41 45.02 0.11 6.05 16 13 N -0.70 -22.13 5.07 -445.58 -2.26 -24.40 16 14 C 0.60 18.78 7.78 86.69 0.67 19.46 16 15 O -0.57 -20.01 16.53 -4.02 -0.07 -20.08 16 16 C -0.13 -3.28 6.99 40.82 0.29 -3.00 16 17 C 0.12 1.95 11.27 83.85 0.95 2.90 16 18 N -0.35 -5.38 3.41 -350.84 -1.20 -6.58 16 19 C 0.09 0.23 7.02 85.63 0.60 0.83 16 20 C 0.50 4.72 8.14 87.66 0.71 5.43 16 21 N -0.83 0.19 8.87 -173.53 -1.54 -1.35 16 22 O -0.58 -14.15 16.57 -3.03 -0.05 -14.20 16 23 N -0.07 -1.79 12.89 37.02 0.48 -1.31 16 24 N -0.23 -6.69 12.04 -49.99 -0.60 -7.29 16 25 C -0.13 -4.76 5.65 30.67 0.17 -4.58 16 26 C 0.15 6.49 6.52 86.36 0.56 7.05 16 27 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 28 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 29 H 0.06 3.45 6.07 -2.39 -0.01 3.44 16 30 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 31 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 32 H 0.07 2.78 7.58 -2.38 -0.02 2.76 16 33 H 0.41 11.98 8.29 -92.71 -0.77 11.21 16 34 H 0.25 1.83 8.06 -2.91 -0.02 1.80 16 35 H 0.17 -0.70 8.14 -2.39 -0.02 -0.72 16 36 H 0.19 -1.58 8.08 -2.39 -0.02 -1.60 16 37 H 0.43 -3.86 8.83 -92.71 -0.82 -4.68 16 38 H 0.41 0.28 8.93 -92.71 -0.83 -0.55 16 39 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 41 H 0.01 0.65 8.14 -2.39 -0.02 0.64 16 42 H 0.06 2.52 7.93 -2.39 -0.02 2.50 16 Total: -1.00 -89.78 358.55 -0.46 -90.24 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -1.32 Total: 4.48 kcal Atomic # 6 Polarization: 16.30 SS G_CDS: 5.91 Total: 22.22 kcal Atomic # 7 Polarization: -123.40 SS G_CDS: -6.97 Total: -130.38 kcal Atomic # 8 Polarization: -34.16 SS G_CDS: -0.12 Total: -34.27 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -89.78 -0.46 -90.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004200932.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.443 kcal (2) G-P(sol) polarization free energy of solvation -89.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds