Wall clock time and date at job start Fri Apr 10 2020 18:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99977 * 2 1 4 4 H 1.48501 * 109.47201 * 240.00132 * 3 2 1 5 5 H 1.48503 * 109.46878 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47328 * 119.99601 * 3 2 1 7 7 C 1.38813 * 119.99784 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99438 * 197.35250 * 7 2 1 9 9 N 1.36936 * 120.00195 * 17.36157 * 7 2 1 10 10 C 1.46931 * 120.63067 * 27.67060 * 9 7 2 11 11 C 1.53187 * 108.77328 * 126.41445 * 10 9 7 12 12 C 1.53039 * 109.34129 * 54.62137 * 11 10 9 13 13 C 1.53042 * 109.53673 * 298.67895 * 12 11 10 14 14 H 1.09000 * 109.47571 * 301.37057 * 13 12 11 15 15 N 1.46494 * 109.52362 * 181.30001 * 13 12 11 16 16 C 1.34783 * 119.99847 * 155.11585 * 15 13 12 17 17 O 1.21593 * 120.00120 * 0.02562 * 16 15 13 18 18 C 1.47530 * 119.99912 * 180.02562 * 16 15 13 19 19 C 1.36595 * 125.76988 * 179.71398 * 18 16 15 20 20 N 1.34813 * 106.83853 * 179.89944 * 19 18 16 21 21 C 1.46493 * 126.59655 * 180.15198 * 20 19 18 22 22 C 1.50700 * 109.47370 * 125.26836 * 21 20 19 23 23 N 1.34776 * 120.00040 * 180.02562 * 22 21 20 24 24 O 1.21283 * 119.99995 * 0.02562 * 22 21 20 25 25 N 1.40211 * 106.81106 * 0.35729 * 20 19 18 26 26 N 1.28768 * 108.36785 * 359.77345 * 25 20 19 27 27 C 1.46921 * 120.62787 * 207.69559 * 9 7 2 28 28 H 0.97006 * 120.00403 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.58644 * 6.62357 * 10 9 7 30 30 H 1.09000 * 109.69982 * 246.27127 * 10 9 7 31 31 H 1.09004 * 109.49732 * 174.58428 * 11 10 9 32 32 H 1.09000 * 109.49839 * 294.64876 * 11 10 9 33 33 H 1.08999 * 109.46398 * 58.66496 * 12 11 10 34 34 H 1.09001 * 109.46237 * 178.62967 * 12 11 10 35 35 H 0.96994 * 120.00413 * 335.11412 * 15 13 12 36 36 H 1.07997 * 126.57738 * 0.03675 * 19 18 16 37 37 H 1.08996 * 109.47368 * 245.27200 * 21 20 19 38 38 H 1.09004 * 109.46766 * 5.27039 * 21 20 19 39 39 H 0.97005 * 120.00221 * 0.02562 * 23 22 21 40 40 H 0.96998 * 119.99882 * 180.02562 * 23 22 21 41 41 H 1.08993 * 109.59005 * 353.36718 * 27 9 7 42 42 H 1.09002 * 109.58930 * 113.80288 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0533 -1.2233 0.2795 9 7 1.3723 -2.3612 -0.3528 10 6 0.2277 -2.3350 -1.2737 11 6 0.5005 -3.3056 -2.4270 12 6 0.8188 -4.6907 -1.8593 13 6 2.0741 -4.6104 -0.9876 14 1 2.9079 -4.2407 -1.5843 15 7 2.3962 -5.9423 -0.4694 16 6 3.6629 -6.2406 -0.1185 17 8 4.5382 -5.4041 -0.2316 18 6 3.9875 -7.5820 0.4028 19 6 5.2261 -8.0112 0.7868 20 7 5.0867 -9.2871 1.1993 21 6 6.1470 -10.1619 1.7060 22 6 5.7550 -10.6936 3.0606 23 7 6.5833 -11.5246 3.7238 24 8 4.6943 -10.3737 3.5539 25 7 3.7328 -9.6174 1.0456 26 7 3.1155 -8.5902 0.5745 27 6 1.8191 -3.6546 0.1822 28 1 -0.4851 0.8401 -0.0004 29 1 0.0984 -1.3268 -1.6673 30 1 -0.6758 -2.6397 -0.7456 31 1 -0.3803 -3.3680 -3.0661 32 1 1.3488 -2.9479 -3.0106 33 1 -0.0202 -5.0374 -1.2560 34 1 0.9894 -5.3887 -2.6790 35 1 1.6980 -6.6094 -0.3788 36 1 6.1409 -7.4376 0.7663 37 1 6.2917 -10.9939 1.0171 38 1 7.0746 -9.5960 1.7923 39 1 7.4319 -11.7802 3.3294 40 1 6.3309 -11.8671 4.5954 41 1 2.7399 -3.5171 0.7490 42 1 1.0467 -4.0684 0.8304 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001009644037.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:10 Heat of formation + Delta-G solvation = 16.292543 kcal Electronic energy + Delta-G solvation = -26661.214362 eV Core-core repulsion = 22677.871585 eV Total energy + Delta-G solvation = -3983.342777 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.154 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.26851 -40.81485 -40.42146 -38.87849 -35.97951 -35.58006 -34.76604 -34.09266 -32.33300 -32.12753 -30.43918 -29.25772 -27.24386 -25.12251 -23.96883 -23.86219 -23.11276 -22.09836 -21.29714 -20.93784 -19.35125 -18.69570 -18.33070 -18.00085 -17.20948 -17.04962 -16.82944 -16.61150 -16.30537 -15.86393 -15.66923 -15.63140 -15.20329 -15.06786 -14.84752 -14.61515 -14.19996 -14.00096 -13.80962 -13.39904 -13.13275 -13.01188 -12.70437 -12.56402 -12.36793 -12.13783 -11.95843 -11.82923 -11.75791 -11.58443 -11.29940 -11.12330 -11.05177 -10.74386 -10.60017 -10.39731 -10.06453 -8.68768 -7.88390 -5.34214 0.11258 0.64591 0.98027 1.45650 1.46229 1.49031 1.56390 2.08829 2.26793 2.36678 2.52694 3.16733 3.25542 3.47597 3.70241 3.77803 3.87849 3.94504 3.98417 4.09323 4.12388 4.27293 4.35980 4.49093 4.56369 4.71343 4.81628 4.92799 5.03779 5.13788 5.16272 5.28138 5.32346 5.46484 5.56199 5.64436 5.77599 5.80922 6.35959 6.37851 6.46627 6.91504 7.13312 7.18171 7.24309 7.83240 8.34428 9.17532 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.021694 B = 0.002482 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.382869 B =11278.835932 C =11954.694484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.047 4.047 3 Si 0.969 3.031 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.267 4.267 8 H 0.057 0.943 9 N -0.606 5.606 10 C 0.170 3.830 11 C -0.127 4.127 12 C -0.107 4.107 13 C 0.144 3.856 14 H 0.070 0.930 15 N -0.699 5.699 16 C 0.602 3.398 17 O -0.569 6.569 18 C -0.124 4.124 19 C 0.116 3.884 20 N -0.346 5.346 21 C 0.094 3.906 22 C 0.499 3.501 23 N -0.825 5.825 24 O -0.583 6.583 25 N -0.066 5.066 26 N -0.228 5.228 27 C 0.144 3.856 28 H 0.252 0.748 29 H 0.057 0.943 30 H 0.002 0.998 31 H 0.084 0.916 32 H 0.053 0.947 33 H 0.070 0.930 34 H 0.087 0.913 35 H 0.413 0.587 36 H 0.245 0.755 37 H 0.168 0.832 38 H 0.189 0.811 39 H 0.425 0.575 40 H 0.411 0.589 41 H 0.035 0.965 42 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.397 -26.864 0.442 32.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.243 4.243 3 Si 0.797 3.203 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.397 4.397 8 H 0.075 0.925 9 N -0.330 5.330 10 C 0.045 3.955 11 C -0.167 4.167 12 C -0.145 4.145 13 C 0.038 3.962 14 H 0.088 0.912 15 N -0.349 5.349 16 C 0.387 3.613 17 O -0.447 6.447 18 C -0.262 4.262 19 C -0.041 4.041 20 N -0.131 5.131 21 C -0.029 4.029 22 C 0.282 3.718 23 N -0.391 5.391 24 O -0.461 6.461 25 N -0.047 5.047 26 N -0.102 5.102 27 C 0.017 3.983 28 H 0.061 0.939 29 H 0.076 0.924 30 H 0.020 0.980 31 H 0.103 0.897 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.106 0.894 35 H 0.250 0.750 36 H 0.261 0.739 37 H 0.185 0.815 38 H 0.206 0.794 39 H 0.258 0.742 40 H 0.243 0.757 41 H 0.053 0.947 42 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges 16.189 -26.962 0.714 31.457 hybrid contribution 0.740 1.221 0.654 1.570 sum 16.929 -25.741 1.368 30.839 Atomic orbital electron populations 1.70181 1.06502 1.26079 1.54950 1.25784 0.96148 1.01403 1.00965 0.85322 0.77635 0.79048 0.78333 1.20263 1.21434 1.20399 1.19406 0.92727 0.86179 1.41437 0.92504 1.44238 1.36000 1.01487 1.51276 1.20735 0.87469 0.98291 0.89009 1.22002 1.01566 0.94883 0.98217 1.21628 0.95841 0.97926 0.99080 1.21337 0.98343 0.81202 0.95351 0.91228 1.45784 1.09497 1.15142 1.64512 1.17052 0.82833 0.84741 0.76671 1.90806 1.48099 1.49472 1.56371 1.21399 0.92244 0.96219 1.16378 1.23859 1.01259 0.85083 0.93900 1.50100 1.09367 1.10426 1.43210 1.22413 0.88749 0.97751 0.93943 1.20846 0.84046 0.79274 0.87651 1.43553 1.23161 1.48821 1.23571 1.90910 1.25657 1.59878 1.69671 1.81994 0.86234 1.17513 1.18929 1.74622 1.27508 0.98156 1.09917 1.21215 0.96500 0.86554 0.94022 0.93887 0.92417 0.98026 0.89710 0.92865 0.91177 0.89441 0.75014 0.73938 0.81486 0.79385 0.74175 0.75690 0.94663 0.96837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.70 11.19 21.65 0.24 -56.46 16 2 C -0.05 -2.77 4.91 84.86 0.42 -2.35 16 3 Si 0.97 46.83 29.59 68.60 2.03 48.86 16 4 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 5 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 6 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 7 C -0.27 -15.82 9.59 84.03 0.81 -15.02 16 8 H 0.06 3.39 7.89 -2.91 -0.02 3.36 16 9 N -0.61 -32.77 2.99 -699.10 -2.09 -34.87 16 10 C 0.17 8.46 5.31 86.36 0.46 8.92 16 11 C -0.13 -4.77 6.08 30.67 0.19 -4.59 16 12 C -0.11 -3.48 5.36 30.62 0.16 -3.32 16 13 C 0.14 5.45 2.60 45.07 0.12 5.57 16 14 H 0.07 2.94 7.58 -2.39 -0.02 2.92 16 15 N -0.70 -22.92 5.08 -445.32 -2.26 -25.18 16 16 C 0.60 20.21 7.78 86.69 0.67 20.88 16 17 O -0.57 -22.37 16.53 -4.01 -0.07 -22.44 16 18 C -0.12 -3.43 6.99 40.82 0.29 -3.14 16 19 C 0.12 2.14 11.27 83.85 0.95 3.09 16 20 N -0.35 -5.80 3.41 -350.85 -1.20 -6.99 16 21 C 0.09 0.33 7.02 85.63 0.60 0.93 16 22 C 0.50 5.30 8.14 87.66 0.71 6.02 16 23 N -0.83 -0.68 8.87 -173.53 -1.54 -2.22 16 24 O -0.58 -14.90 16.57 -3.04 -0.05 -14.95 16 25 N -0.07 -1.77 12.88 37.02 0.48 -1.30 16 26 N -0.23 -6.76 12.04 -49.99 -0.60 -7.36 16 27 C 0.14 6.80 6.09 86.37 0.53 7.33 16 28 H 0.25 14.76 8.31 -92.70 -0.77 13.99 16 29 H 0.06 3.22 6.04 -2.39 -0.01 3.20 16 30 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 31 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 32 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.41 11.93 8.29 -92.71 -0.77 11.16 16 36 H 0.24 2.40 8.06 -2.91 -0.02 2.38 16 37 H 0.17 -0.59 8.14 -2.39 -0.02 -0.61 16 38 H 0.19 -1.30 8.08 -2.38 -0.02 -1.31 16 39 H 0.43 -3.45 8.83 -92.70 -0.82 -4.27 16 40 H 0.41 0.71 8.93 -92.71 -0.83 -0.12 16 41 H 0.03 1.78 7.93 -2.39 -0.02 1.76 16 42 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -93.46 358.53 -0.48 -93.94 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -1.32 Total: 4.65 kcal Atomic # 6 Polarization: 18.42 SS G_CDS: 5.89 Total: 24.32 kcal Atomic # 7 Polarization: -127.40 SS G_CDS: -6.97 Total: -134.38 kcal Atomic # 8 Polarization: -37.27 SS G_CDS: -0.12 Total: -37.39 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 2.03 Total: 48.86 kcal Total: -93.46 -0.48 -93.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009644037.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.233 kcal (2) G-P(sol) polarization free energy of solvation -93.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds