Wall clock time and date at job start Fri Apr 10 2020 18:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35549 * 116.99801 * 2 1 4 4 C 1.39187 * 120.44405 * 179.72550 * 3 2 1 5 5 C 1.39197 * 118.41202 * 179.71242 * 4 3 2 6 6 O 1.35546 * 120.44191 * 180.26259 * 5 4 3 7 7 C 1.42902 * 116.99779 * 180.30212 * 6 5 4 8 8 N 1.32744 * 119.11307 * 0.56017 * 5 4 3 9 9 C 1.32426 * 120.81071 * 359.72345 * 8 5 4 10 10 C 1.48550 * 119.13186 * 180.02562 * 9 8 5 11 11 O 1.21473 * 120.00102 * 179.97438 * 10 9 8 12 12 N 1.34776 * 119.99852 * 359.97438 * 10 9 8 13 13 C 1.46503 * 120.00022 * 180.02562 * 12 10 9 14 14 H 1.09005 * 110.63647 * 323.30679 * 13 12 10 15 15 C 1.55159 * 110.71976 * 199.97527 * 13 12 10 16 16 C 1.54906 * 101.58099 * 277.13633 * 15 13 12 17 17 N 1.47424 * 104.83191 * 322.99100 * 16 15 13 18 18 C 1.36937 * 125.64830 * 204.16848 * 17 16 15 19 19 H 1.08005 * 119.99700 * 179.97438 * 18 17 16 20 20 C 1.38807 * 120.00162 * 359.95353 * 18 17 16 21 21 N 1.31615 * 119.99904 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 120.00202 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47020 * 90.00132 * 22 20 18 24 24 H 1.48496 * 109.47227 * 210.00107 * 22 20 18 25 25 H 1.48505 * 109.46908 * 330.00087 * 22 20 18 26 26 C 1.47021 * 108.70462 * 24.12712 * 17 16 15 27 27 N 1.32422 * 121.73672 * 359.97438 * 9 8 5 28 28 H 1.09002 * 109.47382 * 59.99951 * 1 2 3 29 29 H 1.09001 * 109.46938 * 299.99938 * 1 2 3 30 30 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 31 31 H 1.07998 * 120.79262 * 0.02562 * 4 3 2 32 32 H 1.08998 * 109.47151 * 180.02562 * 7 6 5 33 33 H 1.09002 * 109.47074 * 300.00013 * 7 6 5 34 34 H 1.09003 * 109.47335 * 59.99877 * 7 6 5 35 35 H 0.96996 * 120.00264 * 359.97438 * 12 10 9 36 36 H 1.08997 * 111.00230 * 35.21179 * 15 13 12 37 37 H 1.09000 * 111.00233 * 159.05953 * 15 13 12 38 38 H 1.09000 * 110.36971 * 204.15324 * 16 15 13 39 39 H 1.08997 * 110.46400 * 81.87148 * 16 15 13 40 40 H 0.97001 * 119.99938 * 179.97438 * 21 20 18 41 41 H 1.08995 * 109.88778 * 239.52510 * 26 17 16 42 42 H 1.08998 * 109.88163 * 118.35624 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0444 1.2078 0.0000 4 6 3.4337 1.2914 0.0057 5 6 4.0213 2.5533 -0.0006 6 8 5.3705 2.6826 -0.0008 7 6 5.8948 4.0120 -0.0008 8 7 3.2425 3.6283 -0.0006 9 6 1.9235 3.5104 0.0000 10 6 1.0877 4.7385 -0.0006 11 8 -0.1237 4.6487 -0.0006 12 7 1.6735 5.9523 -0.0011 13 6 0.8492 7.1634 -0.0010 14 1 -0.0434 7.0207 -0.6102 15 6 1.6677 8.3845 -0.4974 16 6 2.4086 8.8085 0.7953 17 7 1.4360 8.5808 1.8796 18 6 1.4335 9.2118 3.0949 19 1 0.6742 8.9740 3.8252 20 6 2.4072 10.1565 3.3885 21 7 3.3325 10.4463 2.4984 22 14 2.4043 11.0167 5.0467 23 1 3.2229 10.2375 6.0100 24 1 2.9770 12.3788 4.8988 25 1 1.0106 11.1176 5.5495 26 6 0.4686 7.5649 1.4396 27 7 1.3300 2.3267 -0.0001 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 4.0413 0.3986 0.0099 32 1 6.9841 3.9730 -0.0014 33 1 5.5500 4.5385 -0.8908 34 1 5.5502 4.5386 0.8892 35 1 2.6408 6.0240 -0.0007 36 1 2.3739 8.0918 -1.2743 37 1 1.0096 9.1791 -0.8491 38 1 2.6830 9.8623 0.7470 39 1 3.2953 8.1928 0.9457 40 1 4.0127 11.1068 2.7034 41 1 -0.5387 7.9811 1.4546 42 1 0.5221 6.6944 2.0934 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001014953340.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:13 Heat of formation + Delta-G solvation = -15.304698 kcal Electronic energy + Delta-G solvation = -27368.317599 eV Core-core repulsion = 23351.311911 eV Total energy + Delta-G solvation = -4017.005688 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.73435 -39.61591 -39.44589 -38.01087 -37.10892 -34.03207 -32.93475 -32.31419 -31.58170 -29.22123 -28.24266 -27.61983 -27.01760 -25.58307 -24.39201 -23.40190 -21.58810 -20.23048 -19.86081 -19.31395 -18.75446 -17.30697 -16.84386 -16.79030 -16.69868 -16.00186 -15.91776 -15.82105 -15.02492 -14.98031 -14.70513 -14.35169 -14.03586 -13.89716 -13.61442 -13.15889 -12.54447 -12.40585 -12.17581 -12.08023 -12.05190 -11.63524 -11.56885 -11.33982 -11.08490 -10.89472 -10.80279 -10.44911 -10.13174 -9.97289 -9.96042 -9.90597 -9.86852 -9.59371 -9.30405 -8.79988 -8.63863 -6.85315 -5.67588 -3.08341 0.28364 0.90205 2.16835 2.64589 2.78194 3.01162 3.39419 3.44819 3.46525 3.67821 3.69171 4.16590 4.48475 4.59236 4.78834 5.00640 5.07666 5.08505 5.11674 5.15096 5.19894 5.29494 5.42381 5.43628 5.47860 5.57305 5.71289 5.83045 6.21458 6.32199 6.43174 6.46056 6.49126 6.61497 6.70278 6.84000 6.96797 7.42003 7.46168 7.61178 7.78733 7.83142 8.27017 8.33965 9.20632 9.81113 10.45277 11.36720 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014982 B = 0.003293 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.503711 B = 8500.644736 C = 9210.920376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.295 6.295 3 C 0.385 3.615 4 C -0.254 4.254 5 C 0.389 3.611 6 O -0.295 6.295 7 C 0.033 3.967 8 N -0.566 5.566 9 C 0.372 3.628 10 C 0.582 3.418 11 O -0.506 6.506 12 N -0.683 5.683 13 C 0.130 3.870 14 H 0.092 0.908 15 C -0.152 4.152 16 C 0.151 3.849 17 N -0.603 5.603 18 C -0.219 4.219 19 H 0.077 0.923 20 C -0.011 4.011 21 N -0.924 5.924 22 Si 0.914 3.086 23 H -0.290 1.290 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.127 3.873 27 N -0.543 5.543 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.102 0.898 31 H 0.163 0.837 32 H 0.104 0.896 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.411 0.589 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.109 0.891 39 H 0.012 0.988 40 H 0.252 0.748 41 H 0.035 0.965 42 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.076 -17.554 -9.160 19.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.199 6.199 3 C 0.200 3.800 4 C -0.278 4.278 5 C 0.204 3.796 6 O -0.199 6.199 7 C -0.062 4.062 8 N -0.303 5.303 9 C 0.100 3.900 10 C 0.362 3.638 11 O -0.379 6.379 12 N -0.334 5.334 13 C 0.026 3.974 14 H 0.110 0.890 15 C -0.191 4.191 16 C 0.026 3.974 17 N -0.330 5.330 18 C -0.348 4.348 19 H 0.095 0.905 20 C -0.207 4.207 21 N -0.573 5.573 22 Si 0.745 3.255 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.000 4.000 27 N -0.278 5.278 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.120 0.880 31 H 0.180 0.820 32 H 0.122 0.878 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.248 0.752 36 H 0.084 0.916 37 H 0.097 0.903 38 H 0.127 0.873 39 H 0.030 0.970 40 H 0.062 0.938 41 H 0.052 0.948 42 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 1.095 -17.164 -9.037 19.428 hybrid contribution 0.906 -0.122 0.981 1.341 sum 2.000 -17.285 -8.056 19.175 Atomic orbital electron populations 1.23055 0.75786 1.03493 1.03612 1.86228 1.24018 1.23053 1.86642 1.19580 0.88399 0.84962 0.87069 1.20768 0.92727 0.98366 1.15933 1.19558 0.84839 0.88491 0.86698 1.86233 1.14665 1.32516 1.86471 1.23112 0.99122 0.80311 1.03663 1.68050 1.06443 1.33136 1.22685 1.22362 0.85779 0.91925 0.89895 1.17147 0.86415 0.81668 0.78563 1.90798 1.12631 1.85937 1.48496 1.45814 1.11515 1.04271 1.71843 1.22144 0.94027 0.83056 0.98199 0.88994 1.23347 0.99652 0.95789 1.00294 1.21965 0.89613 1.03403 0.82433 1.44510 1.29957 1.44087 1.14421 1.19092 1.10033 1.15355 0.90302 0.90508 1.24756 0.97550 0.99869 0.98487 1.69771 1.17548 1.36604 1.33346 0.86071 0.77518 0.78811 0.83104 1.21716 1.21656 1.20686 1.21691 0.93801 0.92464 0.92007 1.67916 1.40700 0.97846 1.21327 0.91503 0.91436 0.87988 0.81967 0.87808 0.91463 0.91124 0.75246 0.91551 0.90280 0.87315 0.97033 0.93776 0.94753 0.95582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.41 101.05 1.05 1.36 16 2 O -0.30 -3.24 10.49 -18.34 -0.19 -3.43 16 3 C 0.38 4.90 7.52 -16.80 -0.13 4.77 16 4 C -0.25 -2.90 10.09 -38.87 -0.39 -3.29 16 5 C 0.39 4.85 7.52 -16.80 -0.13 4.72 16 6 O -0.29 -3.24 10.49 -18.33 -0.19 -3.43 16 7 C 0.03 0.29 10.41 101.05 1.05 1.35 16 8 N -0.57 -7.94 8.51 -11.24 -0.10 -8.04 16 9 C 0.37 5.82 7.60 -157.13 -1.19 4.62 16 10 C 0.58 10.08 7.85 -12.01 -0.09 9.98 16 11 O -0.51 -9.99 16.59 5.39 0.09 -9.90 16 12 N -0.68 -11.33 5.10 -52.74 -0.27 -11.60 16 13 C 0.13 2.31 3.25 -66.09 -0.21 2.10 16 14 H 0.09 1.56 7.69 -51.93 -0.40 1.16 16 15 C -0.15 -2.66 6.64 -24.58 -0.16 -2.83 16 16 C 0.15 3.45 5.87 -2.53 -0.01 3.43 16 17 N -0.60 -15.21 3.39 -170.08 -0.58 -15.79 16 18 C -0.22 -6.09 10.27 -15.06 -0.15 -6.25 16 19 H 0.08 2.09 7.83 -52.48 -0.41 1.68 16 20 C -0.01 -0.32 5.49 -17.43 -0.10 -0.41 16 21 N -0.92 -26.20 10.09 55.49 0.56 -25.64 16 22 Si 0.91 21.95 29.55 -169.99 -5.02 16.92 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 C 0.13 2.75 6.98 -3.07 -0.02 2.73 16 27 N -0.54 -8.17 9.06 -11.24 -0.10 -8.28 16 28 H 0.07 0.61 8.12 -51.93 -0.42 0.19 16 29 H 0.07 0.65 8.12 -51.93 -0.42 0.22 16 30 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.16 1.43 8.06 -52.49 -0.42 1.01 16 32 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 34 H 0.07 0.72 8.12 -51.93 -0.42 0.30 16 35 H 0.41 6.45 7.92 -40.82 -0.32 6.13 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 38 H 0.11 2.82 5.87 -51.93 -0.30 2.52 16 39 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 41 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.03 0.60 8.04 -51.93 -0.42 0.18 16 LS Contribution 359.55 15.07 5.42 5.42 Total: -1.00 -32.13 359.55 -6.52 -38.65 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -5.64 Total: 2.83 kcal Atomic # 6 Polarization: 22.78 SS G_CDS: -0.49 Total: 22.29 kcal Atomic # 7 Polarization: -68.86 SS G_CDS: -0.48 Total: -69.34 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: -0.30 Total: -16.76 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.13 -6.52 -38.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014953340.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.342 kcal (2) G-P(sol) polarization free energy of solvation -32.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds