Wall clock time and date at job start Fri Apr 10 2020 18:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35549 * 116.99801 * 2 1 4 4 C 1.39187 * 120.44405 * 179.72550 * 3 2 1 5 5 C 1.39197 * 118.41202 * 179.71242 * 4 3 2 6 6 O 1.35546 * 120.44191 * 180.26259 * 5 4 3 7 7 C 1.42902 * 116.99779 * 180.30212 * 6 5 4 8 8 N 1.32744 * 119.11307 * 0.56017 * 5 4 3 9 9 C 1.32426 * 120.81071 * 359.72345 * 8 5 4 10 10 C 1.48550 * 119.13186 * 180.02562 * 9 8 5 11 11 O 1.21473 * 120.00102 * 179.97438 * 10 9 8 12 12 N 1.34776 * 119.99852 * 359.97438 * 10 9 8 13 13 C 1.46503 * 120.00022 * 180.02562 * 12 10 9 14 14 H 1.09005 * 110.63647 * 323.30679 * 13 12 10 15 15 C 1.55159 * 110.71976 * 199.97527 * 13 12 10 16 16 C 1.54906 * 101.58099 * 277.13633 * 15 13 12 17 17 N 1.47424 * 104.83191 * 322.99100 * 16 15 13 18 18 C 1.36937 * 125.64830 * 204.16848 * 17 16 15 19 19 H 1.08005 * 119.99700 * 179.97438 * 18 17 16 20 20 C 1.38807 * 120.00162 * 359.95353 * 18 17 16 21 21 N 1.31615 * 119.99904 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 120.00202 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47020 * 90.00132 * 22 20 18 24 24 H 1.48496 * 109.47227 * 210.00107 * 22 20 18 25 25 H 1.48505 * 109.46908 * 330.00087 * 22 20 18 26 26 C 1.47021 * 108.70462 * 24.12712 * 17 16 15 27 27 N 1.32422 * 121.73672 * 359.97438 * 9 8 5 28 28 H 1.09002 * 109.47382 * 59.99951 * 1 2 3 29 29 H 1.09001 * 109.46938 * 299.99938 * 1 2 3 30 30 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 31 31 H 1.07998 * 120.79262 * 0.02562 * 4 3 2 32 32 H 1.08998 * 109.47151 * 180.02562 * 7 6 5 33 33 H 1.09002 * 109.47074 * 300.00013 * 7 6 5 34 34 H 1.09003 * 109.47335 * 59.99877 * 7 6 5 35 35 H 0.96996 * 120.00264 * 359.97438 * 12 10 9 36 36 H 1.08997 * 111.00230 * 35.21179 * 15 13 12 37 37 H 1.09000 * 111.00233 * 159.05953 * 15 13 12 38 38 H 1.09000 * 110.36971 * 204.15324 * 16 15 13 39 39 H 1.08997 * 110.46400 * 81.87148 * 16 15 13 40 40 H 0.97001 * 119.99938 * 179.97438 * 21 20 18 41 41 H 1.08995 * 109.88778 * 239.52510 * 26 17 16 42 42 H 1.08998 * 109.88163 * 118.35624 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0444 1.2078 0.0000 4 6 3.4337 1.2914 0.0057 5 6 4.0213 2.5533 -0.0006 6 8 5.3705 2.6826 -0.0008 7 6 5.8948 4.0120 -0.0008 8 7 3.2425 3.6283 -0.0006 9 6 1.9235 3.5104 0.0000 10 6 1.0877 4.7385 -0.0006 11 8 -0.1237 4.6487 -0.0006 12 7 1.6735 5.9523 -0.0011 13 6 0.8492 7.1634 -0.0010 14 1 -0.0434 7.0207 -0.6102 15 6 1.6677 8.3845 -0.4974 16 6 2.4086 8.8085 0.7953 17 7 1.4360 8.5808 1.8796 18 6 1.4335 9.2118 3.0949 19 1 0.6742 8.9740 3.8252 20 6 2.4072 10.1565 3.3885 21 7 3.3325 10.4463 2.4984 22 14 2.4043 11.0167 5.0467 23 1 3.2229 10.2375 6.0100 24 1 2.9770 12.3788 4.8988 25 1 1.0106 11.1176 5.5495 26 6 0.4686 7.5649 1.4396 27 7 1.3300 2.3267 -0.0001 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 4.0413 0.3986 0.0099 32 1 6.9841 3.9730 -0.0014 33 1 5.5500 4.5385 -0.8908 34 1 5.5502 4.5386 0.8892 35 1 2.6408 6.0240 -0.0007 36 1 2.3739 8.0918 -1.2743 37 1 1.0096 9.1791 -0.8491 38 1 2.6830 9.8623 0.7470 39 1 3.2953 8.1928 0.9457 40 1 4.0127 11.1068 2.7034 41 1 -0.5387 7.9811 1.4546 42 1 0.5221 6.6944 2.0934 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001014953340.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:12 Heat of formation + Delta-G solvation = -40.995361 kcal Electronic energy + Delta-G solvation = -27369.431629 eV Core-core repulsion = 23351.311911 eV Total energy + Delta-G solvation = -4018.119718 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.76005 -40.96977 -40.30860 -39.16600 -38.55448 -35.64863 -34.17110 -33.60689 -32.99112 -30.99868 -29.19773 -28.99532 -27.96674 -26.91144 -26.14045 -24.34385 -22.86891 -22.05361 -21.38040 -20.39547 -19.75252 -18.95928 -18.23248 -17.79025 -17.66726 -17.37450 -16.83873 -16.73369 -16.68858 -16.29634 -15.96600 -15.65203 -15.46149 -15.14094 -14.87660 -14.70363 -14.25061 -13.80694 -13.39420 -13.12441 -13.00862 -12.92508 -12.86789 -12.80222 -12.47768 -12.40760 -12.35870 -12.10609 -12.00785 -11.83070 -11.47821 -11.25300 -10.97670 -10.92344 -10.74187 -10.29835 -10.13568 -8.88042 -7.77059 -5.20475 -0.79697 -0.08897 1.25407 1.41417 1.47693 1.48292 1.57359 1.61207 2.08218 2.49626 2.55310 2.71002 3.01782 3.33207 3.58047 3.71327 3.77002 3.84629 4.05083 4.11675 4.30034 4.36193 4.36679 4.41312 4.42026 4.43936 4.66679 4.71961 4.75205 4.82942 4.88127 4.95897 5.05641 5.41893 5.44224 5.47731 5.64941 5.73487 5.82193 5.93673 6.23000 6.33305 6.63571 6.94227 7.13163 7.78274 8.41296 9.24321 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014982 B = 0.003293 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.503711 B = 8500.644736 C = 9210.920376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.292 6.292 3 C 0.375 3.625 4 C -0.237 4.237 5 C 0.379 3.621 6 O -0.291 6.291 7 C 0.028 3.972 8 N -0.568 5.568 9 C 0.356 3.644 10 C 0.584 3.416 11 O -0.536 6.536 12 N -0.677 5.677 13 C 0.143 3.857 14 H 0.109 0.891 15 C -0.130 4.130 16 C 0.153 3.847 17 N -0.622 5.622 18 C -0.242 4.242 19 H 0.072 0.928 20 C -0.059 4.059 21 N -0.942 5.942 22 Si 0.977 3.023 23 H -0.289 1.289 24 H -0.289 1.289 25 H -0.274 1.274 26 C 0.126 3.874 27 N -0.560 5.560 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.139 0.861 31 H 0.192 0.808 32 H 0.134 0.866 33 H 0.069 0.931 34 H 0.055 0.945 35 H 0.416 0.584 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.078 0.922 39 H -0.004 1.004 40 H 0.248 0.752 41 H 0.035 0.965 42 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.711 -18.870 -9.840 21.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.196 6.196 3 C 0.191 3.809 4 C -0.260 4.260 5 C 0.195 3.805 6 O -0.195 6.195 7 C -0.066 4.066 8 N -0.306 5.306 9 C 0.084 3.916 10 C 0.366 3.634 11 O -0.410 6.410 12 N -0.328 5.328 13 C 0.039 3.961 14 H 0.126 0.874 15 C -0.169 4.169 16 C 0.029 3.971 17 N -0.349 5.349 18 C -0.371 4.371 19 H 0.090 0.910 20 C -0.252 4.252 21 N -0.592 5.592 22 Si 0.805 3.195 23 H -0.216 1.216 24 H -0.216 1.216 25 H -0.199 1.199 26 C -0.001 4.001 27 N -0.295 5.295 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.156 0.844 31 H 0.209 0.791 32 H 0.152 0.848 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.253 0.747 36 H 0.118 0.882 37 H 0.108 0.892 38 H 0.096 0.904 39 H 0.014 0.986 40 H 0.058 0.942 41 H 0.053 0.947 42 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges 1.743 -18.507 -9.731 20.982 hybrid contribution 0.738 0.200 1.214 1.435 sum 2.481 -18.306 -8.517 20.342 Atomic orbital electron populations 1.23261 0.74639 1.05620 1.02700 1.86253 1.25087 1.21911 1.86357 1.19814 0.89021 0.84883 0.87162 1.21070 0.92427 0.99017 1.13496 1.19785 0.85368 0.88540 0.86785 1.86259 1.13598 1.33455 1.86212 1.23306 1.00796 0.79466 1.03021 1.67969 1.05867 1.34112 1.22649 1.21896 0.86169 0.91473 0.92063 1.17370 0.86251 0.82242 0.77576 1.90770 1.13907 1.86488 1.49858 1.45722 1.11620 1.03916 1.71584 1.21969 0.94879 0.83565 0.95736 0.87366 1.23191 0.99713 0.95691 0.98305 1.21791 0.89562 1.01308 0.84482 1.44771 1.31018 1.44701 1.14382 1.19376 1.10191 1.15945 0.91566 0.90969 1.25513 0.97399 1.00576 1.01732 1.69999 1.17778 1.36779 1.34624 0.85111 0.77656 0.77467 0.79262 1.21606 1.21553 1.19889 1.21779 0.93236 0.90979 0.94084 1.67828 1.41667 0.98318 1.21727 0.92148 0.92604 0.84351 0.79063 0.84814 0.91263 0.92576 0.74665 0.88210 0.89192 0.90394 0.98573 0.94177 0.94726 0.97395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.41 113.37 1.18 1.69 16 2 O -0.29 -5.89 10.49 -88.55 -0.93 -6.82 16 3 C 0.38 9.07 7.52 84.78 0.64 9.71 16 4 C -0.24 -4.91 10.09 22.73 0.23 -4.68 16 5 C 0.38 8.89 7.52 84.79 0.64 9.53 16 6 O -0.29 -5.84 10.49 -88.52 -0.93 -6.77 16 7 C 0.03 0.47 10.41 113.37 1.18 1.65 16 8 N -0.57 -15.54 8.51 -302.16 -2.57 -18.11 16 9 C 0.36 11.03 7.60 137.71 1.05 12.08 16 10 C 0.58 20.18 7.85 87.00 0.68 20.86 16 11 O -0.54 -21.23 16.59 -3.63 -0.06 -21.30 16 12 N -0.68 -22.10 5.10 -439.09 -2.24 -24.34 16 13 C 0.14 4.96 3.25 46.18 0.15 5.11 16 14 H 0.11 3.49 7.69 -2.38 -0.02 3.48 16 15 C -0.13 -4.37 6.64 31.99 0.21 -4.16 16 16 C 0.15 7.06 5.87 86.85 0.51 7.57 16 17 N -0.62 -31.86 3.39 -692.02 -2.35 -34.20 16 18 C -0.24 -13.66 10.27 84.03 0.86 -12.79 16 19 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 20 C -0.06 -3.31 5.49 84.86 0.47 -2.85 16 21 N -0.94 -54.25 10.09 21.65 0.22 -54.03 16 22 Si 0.98 45.45 29.55 68.60 2.03 47.47 16 23 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 24 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 25 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 26 C 0.13 5.47 6.98 86.73 0.61 6.08 16 27 N -0.56 -16.63 9.06 -302.16 -2.74 -19.36 16 28 H 0.06 1.06 8.12 -2.39 -0.02 1.04 16 29 H 0.06 1.04 8.12 -2.39 -0.02 1.02 16 30 H 0.14 1.18 8.14 -2.38 -0.02 1.16 16 31 H 0.19 2.75 8.06 -2.91 -0.02 2.73 16 32 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.07 1.12 8.12 -2.39 -0.02 1.10 16 34 H 0.06 1.10 8.12 -2.39 -0.02 1.08 16 35 H 0.42 12.81 7.92 -92.71 -0.73 12.07 16 36 H 0.10 2.71 8.14 -2.39 -0.02 2.70 16 37 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 38 H 0.08 4.12 5.87 -2.39 -0.01 4.11 16 39 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 40 H 0.25 13.87 8.31 -92.71 -0.77 13.10 16 41 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.01 0.38 8.04 -2.39 -0.02 0.36 16 Total: -1.00 -70.22 359.55 -0.85 -71.07 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: 0.32 Total: 16.59 kcal Atomic # 6 Polarization: 41.40 SS G_CDS: 8.40 Total: 49.80 kcal Atomic # 7 Polarization: -140.38 SS G_CDS: -9.68 Total: -150.06 kcal Atomic # 8 Polarization: -32.97 SS G_CDS: -1.92 Total: -34.88 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.47 kcal Total: -70.22 -0.85 -71.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014953340.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.076 kcal (2) G-P(sol) polarization free energy of solvation -70.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds