Wall clock time and date at job start Fri Apr 10 2020 18:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35281 * 116.99729 * 2 1 4 4 N 1.32808 * 120.59137 * 0.20927 * 3 2 1 5 5 C 1.31800 * 121.04621 * 180.27132 * 4 3 2 6 6 N 1.31793 * 122.29967 * 359.77445 * 5 4 3 7 7 C 1.32817 * 121.04281 * 359.97438 * 6 5 4 8 8 O 1.35287 * 120.58270 * 179.97438 * 7 6 5 9 9 C 1.42896 * 117.00359 * 0.02562 * 8 7 6 10 10 C 1.40636 * 118.82674 * 359.97438 * 7 6 5 11 11 C 1.47215 * 121.01992 * 179.97438 * 10 7 6 12 12 O 1.21629 * 120.00111 * 89.99583 * 11 10 7 13 13 N 1.34773 * 120.00183 * 269.99813 * 11 10 7 14 14 C 1.46501 * 120.00122 * 179.97438 * 13 11 10 15 15 H 1.08993 * 112.90929 * 336.25213 * 14 13 11 16 16 C 1.53962 * 113.66387 * 107.55425 * 14 13 11 17 17 C 1.53782 * 87.11063 * 139.88885 * 16 14 13 18 18 H 1.08996 * 113.68722 * 89.19879 * 17 16 14 19 19 N 1.46499 * 113.61191 * 220.09091 * 17 16 14 20 20 C 1.36942 * 119.99692 * 252.49800 * 19 17 16 21 21 H 1.08002 * 120.00087 * 0.02562 * 20 19 17 22 22 C 1.38815 * 119.99940 * 180.02562 * 20 19 17 23 23 N 1.31613 * 119.99968 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99698 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47253 * 90.00077 * 24 22 20 26 26 H 1.48500 * 109.46952 * 209.99725 * 24 22 20 27 27 H 1.48497 * 109.47274 * 329.99629 * 24 22 20 28 28 C 1.53781 * 87.08260 * 334.63747 * 17 16 14 29 29 H 1.09004 * 109.47225 * 60.00290 * 1 2 3 30 30 H 1.08996 * 109.47263 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46805 * 300.00460 * 1 2 3 32 32 H 1.07998 * 118.84841 * 179.75524 * 5 4 3 33 33 H 1.08993 * 109.47688 * 180.02562 * 9 8 7 34 34 H 1.09001 * 109.46853 * 300.00705 * 9 8 7 35 35 H 1.09007 * 109.46977 * 59.99880 * 9 8 7 36 36 H 0.97002 * 120.00080 * 0.02562 * 13 11 10 37 37 H 1.08997 * 113.53543 * 25.33559 * 16 14 13 38 38 H 1.08998 * 113.73879 * 254.47157 * 16 14 13 39 39 H 0.96997 * 120.00777 * 72.49903 * 19 17 16 40 40 H 0.97003 * 119.99921 * 180.02562 * 23 22 20 41 41 H 1.09002 * 113.61445 * 139.98212 * 28 17 16 42 42 H 1.09002 * 113.61408 * 270.79943 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0432 1.2054 0.0000 4 7 1.3313 2.3266 0.0042 5 6 1.9203 3.5057 -0.0011 6 7 3.2315 3.6379 -0.0064 7 6 4.0271 2.5744 -0.0060 8 8 5.3720 2.7209 -0.0120 9 6 5.8791 4.0569 -0.0179 10 6 3.4468 1.2934 0.0006 11 6 4.2829 0.0817 0.0007 12 8 4.6331 -0.4155 1.0541 13 7 4.6604 -0.4767 -1.1663 14 6 5.4930 -1.6821 -1.1662 15 1 6.0710 -1.7985 -0.2496 16 6 4.7359 -2.9561 -1.5838 17 6 5.9971 -3.3548 -2.3682 18 1 6.7140 -3.9295 -1.7818 19 7 5.7108 -3.9616 -3.6705 20 6 5.9029 -5.3045 -3.8572 21 1 6.2651 -5.9164 -3.0443 22 6 5.6321 -5.8794 -5.0914 23 7 5.1912 -5.1336 -6.0822 24 14 5.8949 -7.7111 -5.3463 25 1 4.6465 -8.4418 -5.0104 26 1 6.2520 -7.9673 -6.7647 27 1 6.9952 -8.1805 -4.4664 28 6 6.3271 -1.8549 -2.4466 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.3068 4.3945 -0.0015 33 1 6.9688 4.0320 -0.0228 34 1 5.5239 4.5763 -0.9079 35 1 5.5313 4.5815 0.8720 36 1 4.3815 -0.0800 -2.0065 37 1 3.8711 -2.7603 -2.2177 38 1 4.5091 -3.6240 -0.7528 39 1 5.3851 -3.4122 -4.4006 40 1 5.0017 -5.5354 -6.9445 41 1 7.3857 -1.6330 -2.3114 42 1 5.8985 -1.3585 -3.3173 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023168651.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:33 Heat of formation + Delta-G solvation = -18.367491 kcal Electronic energy + Delta-G solvation = -26973.328312 eV Core-core repulsion = 22956.189812 eV Total energy + Delta-G solvation = -4017.138500 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.83178 -39.60724 -39.57221 -38.22918 -37.77966 -34.03440 -33.10346 -32.91883 -31.95870 -29.80000 -28.39204 -27.27771 -25.86271 -25.07121 -24.29699 -23.56361 -22.33930 -20.61362 -19.63553 -19.39754 -18.93686 -17.65030 -17.11091 -17.00820 -16.86994 -16.12419 -16.10642 -15.91644 -14.78098 -14.66961 -14.54006 -14.50346 -14.16347 -14.07435 -13.92368 -13.02019 -12.88207 -12.60084 -12.28546 -12.21340 -12.05930 -11.87144 -11.78440 -11.64107 -11.24101 -10.91418 -10.63383 -10.49011 -10.28545 -10.07262 -10.05975 -10.03669 -9.79083 -9.57275 -9.29933 -8.88950 -8.69988 -6.96910 -5.79061 -3.07636 0.37506 0.77204 2.07234 2.52193 2.93472 3.16776 3.34214 3.43375 3.48852 3.50235 3.63141 3.69365 4.45304 4.59726 4.73906 4.87289 4.88390 4.92076 4.98449 4.99194 5.12064 5.16060 5.27498 5.28139 5.41991 5.44331 5.50106 5.89675 5.97588 6.15353 6.29343 6.31522 6.35641 6.53967 6.56091 6.66132 6.70461 6.78545 7.10255 7.55403 7.64403 7.70218 8.29042 8.39572 9.50887 10.07950 10.42587 11.43440 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017498 B = 0.002784 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.778901 B =10054.615430 C =10872.080150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.284 6.284 3 C 0.421 3.579 4 N -0.593 5.593 5 C 0.384 3.616 6 N -0.594 5.594 7 C 0.420 3.580 8 O -0.286 6.286 9 C 0.037 3.963 10 C -0.276 4.276 11 C 0.590 3.410 12 O -0.531 6.531 13 N -0.699 5.699 14 C 0.118 3.882 15 H 0.111 0.889 16 C -0.174 4.174 17 C 0.168 3.832 18 H 0.080 0.920 19 N -0.710 5.710 20 C -0.243 4.243 21 H 0.072 0.928 22 C -0.013 4.013 23 N -0.933 5.933 24 Si 0.908 3.092 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.281 1.281 28 C -0.157 4.157 29 H 0.067 0.933 30 H 0.106 0.894 31 H 0.065 0.935 32 H 0.209 0.791 33 H 0.104 0.896 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.399 0.601 37 H 0.079 0.921 38 H 0.060 0.940 39 H 0.385 0.615 40 H 0.255 0.745 41 H 0.067 0.933 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.591 21.633 12.238 25.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.186 6.186 3 C 0.236 3.764 4 N -0.327 5.327 5 C 0.097 3.903 6 N -0.328 5.328 7 C 0.235 3.765 8 O -0.189 6.189 9 C -0.058 4.058 10 C -0.286 4.286 11 C 0.373 3.627 12 O -0.407 6.407 13 N -0.348 5.348 14 C 0.014 3.986 15 H 0.129 0.871 16 C -0.216 4.216 17 C 0.056 3.944 18 H 0.098 0.902 19 N -0.348 5.348 20 C -0.374 4.374 21 H 0.090 0.910 22 C -0.209 4.209 23 N -0.582 5.582 24 Si 0.739 3.261 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.207 1.207 28 C -0.197 4.197 29 H 0.085 0.915 30 H 0.124 0.876 31 H 0.084 0.916 32 H 0.225 0.775 33 H 0.123 0.877 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.233 0.767 37 H 0.098 0.902 38 H 0.078 0.922 39 H 0.219 0.781 40 H 0.065 0.935 41 H 0.086 0.914 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.429 21.278 12.965 25.733 hybrid contribution -0.091 -0.827 -0.864 1.200 sum -6.520 20.451 12.100 24.641 Atomic orbital electron populations 1.23102 0.75534 1.04173 1.02976 1.86297 1.24149 1.22995 1.85168 1.19667 0.87066 0.85451 0.84192 1.68220 1.40673 0.98678 1.25157 1.24534 0.86893 0.94132 0.84772 1.68210 1.07261 1.32073 1.25289 1.19630 0.84944 0.87476 0.84450 1.86268 1.15012 1.32185 1.85422 1.23079 0.99598 0.80056 1.03032 1.19547 0.92253 0.94507 1.22298 1.17213 0.79014 0.81984 0.84502 1.90790 1.55527 1.63045 1.31296 1.45959 1.52234 1.28913 1.07648 1.22571 0.93162 0.83507 0.99399 0.87150 1.24353 1.00976 0.95632 1.00676 1.21356 0.94036 0.90334 0.88699 0.90157 1.42359 1.77677 1.06706 1.08085 1.19327 1.37045 0.84802 0.96222 0.90968 1.24759 1.02032 0.98045 0.96080 1.69657 1.51390 1.34503 1.02615 0.86179 0.77795 0.85186 0.76976 1.21698 1.21790 1.20679 1.23857 0.99439 1.00117 0.96332 0.91452 0.87604 0.91604 0.77482 0.87740 0.91502 0.91600 0.76727 0.90209 0.92153 0.78111 0.93486 0.91427 0.90031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.41 101.05 1.05 1.37 16 2 O -0.28 -3.63 10.02 -17.54 -0.18 -3.81 16 3 C 0.42 5.35 7.54 -16.22 -0.12 5.23 16 4 N -0.59 -6.17 9.37 -14.36 -0.13 -6.30 16 5 C 0.38 3.24 12.26 -92.15 -1.13 2.11 16 6 N -0.59 -5.98 9.37 -14.36 -0.13 -6.12 16 7 C 0.42 5.13 7.54 -16.22 -0.12 5.01 16 8 O -0.29 -3.35 10.02 -17.55 -0.18 -3.53 16 9 C 0.04 0.27 10.41 101.05 1.05 1.32 16 10 C -0.28 -3.82 5.68 -104.44 -0.59 -4.41 16 11 C 0.59 9.53 6.51 -12.62 -0.08 9.45 16 12 O -0.53 -10.41 16.71 5.25 0.09 -10.32 16 13 N -0.70 -10.32 5.35 -54.06 -0.29 -10.61 16 14 C 0.12 1.89 4.25 -67.02 -0.28 1.60 16 15 H 0.11 1.83 7.46 -51.93 -0.39 1.44 16 16 C -0.17 -3.16 7.68 -25.82 -0.20 -3.36 16 17 C 0.17 3.34 4.48 -67.12 -0.30 3.03 16 18 H 0.08 1.58 8.10 -51.93 -0.42 1.16 16 19 N -0.71 -17.68 5.40 -52.64 -0.28 -17.96 16 20 C -0.24 -6.72 9.97 -15.06 -0.15 -6.87 16 21 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 22 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 23 N -0.93 -28.00 13.06 55.49 0.72 -27.28 16 24 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 27 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 28 C -0.16 -2.56 7.58 -25.92 -0.20 -2.76 16 29 H 0.07 0.52 8.12 -51.93 -0.42 0.10 16 30 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.51 8.12 -51.93 -0.42 0.08 16 32 H 0.21 0.82 8.06 -52.49 -0.42 0.39 16 33 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 35 H 0.07 0.45 8.12 -51.92 -0.42 0.02 16 36 H 0.40 5.16 8.71 -40.82 -0.36 4.81 16 37 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.38 10.09 7.92 -40.82 -0.32 9.76 16 40 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.08 1.31 8.09 -51.93 -0.42 0.89 16 LS Contribution 367.64 15.07 5.54 5.54 Total: -1.00 -34.87 367.64 -6.71 -41.58 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -5.68 Total: 10.22 kcal Atomic # 6 Polarization: 12.42 SS G_CDS: -1.17 Total: 11.25 kcal Atomic # 7 Polarization: -68.15 SS G_CDS: -0.12 Total: -68.27 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: -0.26 Total: -17.65 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.87 -6.71 -41.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023168651.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.215 kcal (2) G-P(sol) polarization free energy of solvation -34.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds