Wall clock time and date at job start Fri Apr 10 2020 18:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35281 * 116.99729 * 2 1 4 4 N 1.32808 * 120.59137 * 0.20927 * 3 2 1 5 5 C 1.31800 * 121.04621 * 180.27132 * 4 3 2 6 6 N 1.31793 * 122.29967 * 359.77445 * 5 4 3 7 7 C 1.32817 * 121.04281 * 359.97438 * 6 5 4 8 8 O 1.35287 * 120.58270 * 179.97438 * 7 6 5 9 9 C 1.42896 * 117.00359 * 0.02562 * 8 7 6 10 10 C 1.40636 * 118.82674 * 359.97438 * 7 6 5 11 11 C 1.47215 * 121.01992 * 179.97438 * 10 7 6 12 12 O 1.21629 * 120.00111 * 89.99583 * 11 10 7 13 13 N 1.34773 * 120.00183 * 269.99813 * 11 10 7 14 14 C 1.46501 * 120.00122 * 179.97438 * 13 11 10 15 15 H 1.08993 * 112.90929 * 336.25213 * 14 13 11 16 16 C 1.53962 * 113.66387 * 107.55425 * 14 13 11 17 17 C 1.53782 * 87.11063 * 139.88885 * 16 14 13 18 18 H 1.08996 * 113.68722 * 89.19879 * 17 16 14 19 19 N 1.46499 * 113.61191 * 220.09091 * 17 16 14 20 20 C 1.36942 * 119.99692 * 252.49800 * 19 17 16 21 21 H 1.08002 * 120.00087 * 0.02562 * 20 19 17 22 22 C 1.38815 * 119.99940 * 180.02562 * 20 19 17 23 23 N 1.31613 * 119.99968 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99698 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47253 * 90.00077 * 24 22 20 26 26 H 1.48500 * 109.46952 * 209.99725 * 24 22 20 27 27 H 1.48497 * 109.47274 * 329.99629 * 24 22 20 28 28 C 1.53781 * 87.08260 * 334.63747 * 17 16 14 29 29 H 1.09004 * 109.47225 * 60.00290 * 1 2 3 30 30 H 1.08996 * 109.47263 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46805 * 300.00460 * 1 2 3 32 32 H 1.07998 * 118.84841 * 179.75524 * 5 4 3 33 33 H 1.08993 * 109.47688 * 180.02562 * 9 8 7 34 34 H 1.09001 * 109.46853 * 300.00705 * 9 8 7 35 35 H 1.09007 * 109.46977 * 59.99880 * 9 8 7 36 36 H 0.97002 * 120.00080 * 0.02562 * 13 11 10 37 37 H 1.08997 * 113.53543 * 25.33559 * 16 14 13 38 38 H 1.08998 * 113.73879 * 254.47157 * 16 14 13 39 39 H 0.96997 * 120.00777 * 72.49903 * 19 17 16 40 40 H 0.97003 * 119.99921 * 180.02562 * 23 22 20 41 41 H 1.09002 * 113.61445 * 139.98212 * 28 17 16 42 42 H 1.09002 * 113.61408 * 270.79943 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0432 1.2054 0.0000 4 7 1.3313 2.3266 0.0042 5 6 1.9203 3.5057 -0.0011 6 7 3.2315 3.6379 -0.0064 7 6 4.0271 2.5744 -0.0060 8 8 5.3720 2.7209 -0.0120 9 6 5.8791 4.0569 -0.0179 10 6 3.4468 1.2934 0.0006 11 6 4.2829 0.0817 0.0007 12 8 4.6331 -0.4155 1.0541 13 7 4.6604 -0.4767 -1.1663 14 6 5.4930 -1.6821 -1.1662 15 1 6.0710 -1.7985 -0.2496 16 6 4.7359 -2.9561 -1.5838 17 6 5.9971 -3.3548 -2.3682 18 1 6.7140 -3.9295 -1.7818 19 7 5.7108 -3.9616 -3.6705 20 6 5.9029 -5.3045 -3.8572 21 1 6.2651 -5.9164 -3.0443 22 6 5.6321 -5.8794 -5.0914 23 7 5.1912 -5.1336 -6.0822 24 14 5.8949 -7.7111 -5.3463 25 1 4.6465 -8.4418 -5.0104 26 1 6.2520 -7.9673 -6.7647 27 1 6.9952 -8.1805 -4.4664 28 6 6.3271 -1.8549 -2.4466 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.3068 4.3945 -0.0015 33 1 6.9688 4.0320 -0.0228 34 1 5.5239 4.5763 -0.9079 35 1 5.5313 4.5815 0.8720 36 1 4.3815 -0.0800 -2.0065 37 1 3.8711 -2.7603 -2.2177 38 1 4.5091 -3.6240 -0.7528 39 1 5.3851 -3.4122 -4.4006 40 1 5.0017 -5.5354 -6.9445 41 1 7.3857 -1.6330 -2.3114 42 1 5.8985 -1.3585 -3.3173 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023168651.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:33 Heat of formation + Delta-G solvation = -47.033325 kcal Electronic energy + Delta-G solvation = -26974.571356 eV Core-core repulsion = 22956.189812 eV Total energy + Delta-G solvation = -4018.381544 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.68356 -40.89124 -40.43428 -39.25024 -39.01241 -35.78816 -34.41094 -33.89478 -33.07153 -31.68787 -29.07126 -27.95672 -26.97430 -26.53434 -26.01495 -24.36834 -23.85234 -21.90133 -20.93272 -20.39831 -19.74281 -19.25940 -18.66188 -17.91531 -17.85110 -17.42794 -16.88595 -16.62186 -16.46468 -16.13488 -15.66555 -15.60321 -15.22399 -15.04029 -14.96423 -14.87117 -14.49490 -13.62049 -13.32912 -13.30044 -13.15745 -12.90124 -12.88244 -12.82464 -12.56096 -12.47356 -12.23638 -12.18503 -12.06097 -11.77625 -11.53385 -11.01280 -10.86041 -10.85460 -10.84171 -10.23170 -10.05686 -8.98831 -7.94741 -5.22916 -0.44758 -0.08808 1.29789 1.33386 1.48554 1.49669 1.58143 2.06528 2.10570 2.47319 2.57547 2.92619 2.97738 3.36676 3.47874 3.68700 3.78979 3.89895 3.94008 3.96253 4.25648 4.31053 4.32025 4.36611 4.38785 4.39747 4.62113 4.70779 4.70957 4.83089 4.87477 4.89285 5.10529 5.14722 5.33603 5.50872 5.52073 5.64012 5.79182 5.90286 6.27534 6.42258 6.77693 7.06775 7.34133 8.09196 8.33139 9.28474 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017498 B = 0.002784 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.778901 B =10054.615430 C =10872.080150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.309 6.309 3 C 0.418 3.582 4 N -0.592 5.592 5 C 0.393 3.607 6 N -0.590 5.590 7 C 0.421 3.579 8 O -0.306 6.306 9 C 0.031 3.969 10 C -0.308 4.308 11 C 0.593 3.407 12 O -0.572 6.572 13 N -0.690 5.690 14 C 0.134 3.866 15 H 0.109 0.891 16 C -0.168 4.168 17 C 0.152 3.848 18 H 0.082 0.918 19 N -0.723 5.723 20 C -0.245 4.245 21 H 0.077 0.923 22 C -0.074 4.074 23 N -0.969 5.969 24 Si 0.971 3.029 25 H -0.289 1.289 26 H -0.295 1.295 27 H -0.269 1.269 28 C -0.138 4.138 29 H 0.075 0.925 30 H 0.119 0.881 31 H 0.074 0.926 32 H 0.256 0.744 33 H 0.124 0.876 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.409 0.591 37 H 0.069 0.931 38 H 0.055 0.945 39 H 0.375 0.625 40 H 0.251 0.749 41 H 0.085 0.915 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.880 23.213 12.800 27.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.212 6.212 3 C 0.232 3.768 4 N -0.327 5.327 5 C 0.107 3.893 6 N -0.325 5.325 7 C 0.235 3.765 8 O -0.209 6.209 9 C -0.062 4.062 10 C -0.318 4.318 11 C 0.378 3.622 12 O -0.452 6.452 13 N -0.339 5.339 14 C 0.029 3.971 15 H 0.127 0.873 16 C -0.210 4.210 17 C 0.042 3.958 18 H 0.100 0.900 19 N -0.361 5.361 20 C -0.377 4.377 21 H 0.095 0.905 22 C -0.267 4.267 23 N -0.619 5.619 24 Si 0.800 3.200 25 H -0.216 1.216 26 H -0.222 1.222 27 H -0.194 1.194 28 C -0.177 4.177 29 H 0.094 0.906 30 H 0.137 0.863 31 H 0.093 0.907 32 H 0.272 0.728 33 H 0.142 0.858 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.244 0.756 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.208 0.792 40 H 0.060 0.940 41 H 0.104 0.896 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.717 22.897 13.557 27.444 hybrid contribution -0.040 -1.201 -0.964 1.540 sum -6.757 21.696 12.593 25.980 Atomic orbital electron populations 1.23342 0.73666 1.05388 1.03794 1.86261 1.26184 1.23663 1.85075 1.19774 0.86862 0.86103 0.84012 1.68346 1.40239 0.98589 1.25527 1.25577 0.86808 0.94878 0.82072 1.68352 1.07765 1.30877 1.25527 1.19714 0.85460 0.87372 0.83908 1.86245 1.14931 1.34614 1.85098 1.23364 1.00707 0.78449 1.03728 1.19460 0.92631 0.94087 1.25596 1.17549 0.78438 0.82322 0.83865 1.90754 1.57240 1.64504 1.32655 1.45856 1.51700 1.28272 1.08078 1.22287 0.92554 0.83121 0.99169 0.87319 1.24184 0.99964 0.96835 0.99983 1.21649 0.94966 0.92296 0.86914 0.89983 1.42500 1.78047 1.05959 1.09553 1.19711 1.35544 0.86215 0.96204 0.90534 1.25539 1.02865 1.02154 0.96097 1.69803 1.53209 1.36068 1.02850 0.85170 0.77825 0.80360 0.76600 1.21604 1.22181 1.19404 1.23658 1.00655 0.96956 0.96453 0.90592 0.86294 0.90749 0.72826 0.85802 0.90604 0.91025 0.75553 0.91243 0.92620 0.79239 0.94009 0.89611 0.89611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.41 113.37 1.18 1.69 16 2 O -0.31 -7.84 10.02 -85.66 -0.86 -8.69 16 3 C 0.42 10.32 7.54 85.13 0.64 10.96 16 4 N -0.59 -11.18 9.37 -312.16 -2.92 -14.11 16 5 C 0.39 5.51 12.26 180.88 2.22 7.72 16 6 N -0.59 -10.59 9.37 -312.14 -2.92 -13.52 16 7 C 0.42 9.83 7.54 85.13 0.64 10.47 16 8 O -0.31 -6.86 10.02 -85.73 -0.86 -7.71 16 9 C 0.03 0.40 10.41 113.37 1.18 1.58 16 10 C -0.31 -8.40 5.68 -19.75 -0.11 -8.51 16 11 C 0.59 19.25 6.51 86.60 0.56 19.81 16 12 O -0.57 -22.81 16.71 -4.12 -0.07 -22.88 16 13 N -0.69 -20.15 5.35 -443.21 -2.37 -22.52 16 14 C 0.13 4.20 4.25 45.58 0.19 4.40 16 15 H 0.11 3.55 7.46 -2.39 -0.02 3.53 16 16 C -0.17 -6.09 7.68 31.18 0.24 -5.86 16 17 C 0.15 5.99 4.48 45.52 0.20 6.19 16 18 H 0.08 3.19 8.10 -2.39 -0.02 3.17 16 19 N -0.72 -36.19 5.40 -320.44 -1.73 -37.92 16 20 C -0.24 -13.58 9.97 84.03 0.84 -12.75 16 21 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 22 C -0.07 -4.26 5.50 84.86 0.47 -3.79 16 23 N -0.97 -58.90 13.06 21.65 0.28 -58.62 16 24 Si 0.97 46.14 29.55 68.60 2.03 48.17 16 25 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 26 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 27 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 28 C -0.14 -4.32 7.58 31.12 0.24 -4.09 16 29 H 0.08 1.07 8.12 -2.39 -0.02 1.05 16 30 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.07 1.05 8.12 -2.38 -0.02 1.03 16 32 H 0.26 0.87 8.06 -2.91 -0.02 0.85 16 33 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.08 0.84 8.12 -2.39 -0.02 0.82 16 35 H 0.07 0.84 8.12 -2.38 -0.02 0.82 16 36 H 0.41 10.35 8.71 -92.71 -0.81 9.55 16 37 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 38 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.38 19.95 7.92 -92.71 -0.73 19.21 16 40 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 41 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 42 H 0.09 2.66 8.09 -2.39 -0.02 2.64 16 Total: -1.00 -75.75 367.64 -1.40 -77.16 By element: Atomic # 1 Polarization: 33.28 SS G_CDS: -0.47 Total: 32.81 kcal Atomic # 6 Polarization: 19.35 SS G_CDS: 8.49 Total: 27.84 kcal Atomic # 7 Polarization: -137.02 SS G_CDS: -9.67 Total: -146.68 kcal Atomic # 8 Polarization: -37.51 SS G_CDS: -1.79 Total: -39.29 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Total: -75.75 -1.40 -77.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023168651.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.125 kcal (2) G-P(sol) polarization free energy of solvation -75.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds