Wall clock time and date at job start Fri Apr 10 2020 18:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46506 * 120.00054 * 2 1 4 4 C 1.34777 * 120.00040 * 180.02562 * 2 1 3 5 5 O 1.21279 * 120.00048 * 359.97438 * 4 2 1 6 6 C 1.50705 * 119.99937 * 179.97438 * 4 2 1 7 7 N 1.46497 * 109.46831 * 179.97438 * 6 4 2 8 8 C 1.34820 * 126.59359 * 125.27206 * 7 6 4 9 9 C 1.36597 * 106.84331 * 180.15062 * 8 7 6 10 10 C 1.47519 * 125.77183 * 179.89938 * 9 8 7 11 11 O 1.21593 * 120.00072 * 359.71586 * 10 9 8 12 12 N 1.34777 * 119.99665 * 179.71279 * 10 9 8 13 13 C 1.46499 * 119.99665 * 179.72393 * 12 10 9 14 14 C 1.53951 * 113.74297 * 254.01897 * 13 12 10 15 15 N 1.47814 * 86.03758 * 222.08522 * 14 13 12 16 16 C 1.36932 * 134.45715 * 204.64642 * 15 14 13 17 17 H 1.07995 * 120.00326 * 179.86751 * 16 15 14 18 18 C 1.38817 * 119.99793 * 359.86085 * 16 15 14 19 19 N 1.31613 * 120.00127 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99909 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47108 * 90.00277 * 20 18 16 22 22 H 1.48497 * 109.47562 * 210.00217 * 20 18 16 23 23 H 1.48506 * 109.47058 * 330.00455 * 20 18 16 24 24 C 1.47577 * 91.05097 * 24.55007 * 15 14 13 25 25 N 1.34402 * 108.45511 * 359.63220 * 9 8 7 26 26 N 1.28761 * 109.52544 * 0.23293 * 25 9 8 27 27 H 1.08997 * 109.46934 * 269.99772 * 1 2 3 28 28 H 1.09004 * 109.47056 * 29.99572 * 1 2 3 29 29 H 1.09002 * 109.47138 * 149.99777 * 1 2 3 30 30 H 1.08996 * 109.47006 * 269.99915 * 3 2 1 31 31 H 1.08997 * 109.46912 * 30.00395 * 3 2 1 32 32 H 1.09003 * 109.46850 * 150.00321 * 3 2 1 33 33 H 1.08996 * 109.46898 * 60.00216 * 6 4 2 34 34 H 1.08994 * 109.47116 * 299.99897 * 6 4 2 35 35 H 1.07999 * 126.57674 * 0.02562 * 8 7 6 36 36 H 0.97001 * 120.00485 * 0.02562 * 12 10 9 37 37 H 1.09000 * 112.94810 * 25.60828 * 13 12 10 38 38 H 1.09000 * 113.77101 * 336.35008 * 14 13 12 39 39 H 1.09000 * 113.76926 * 107.74289 * 14 13 12 40 40 H 0.97003 * 119.99806 * 180.02562 * 19 18 16 41 41 H 1.09005 * 113.76936 * 221.15467 * 24 15 14 42 42 H 1.08997 * 113.77659 * 89.75281 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5325 -2.2175 -0.0005 6 6 3.6459 -1.1672 -0.0011 7 7 4.1342 -2.5484 -0.0010 8 6 4.9911 -3.0980 -0.8849 9 6 5.1658 -4.3998 -0.5098 10 6 6.0229 -5.3866 -1.1937 11 8 6.6469 -5.0654 -2.1866 12 7 6.1143 -6.6443 -0.7178 13 6 6.9607 -7.6260 -1.4004 14 6 6.1696 -8.6779 -2.1990 15 7 7.1287 -9.6625 -1.6553 16 6 7.5771 -10.8904 -2.0628 17 1 8.3052 -11.4236 -1.4696 18 6 7.0957 -11.4500 -3.2384 19 7 6.2087 -10.8001 -3.9616 20 14 7.7069 -13.1255 -3.7940 21 1 6.8346 -14.1842 -3.2252 22 1 7.6715 -13.1987 -5.2768 23 1 9.1005 -13.3257 -3.3216 24 6 7.4105 -8.7900 -0.4989 25 7 4.4292 -4.6279 0.5910 26 7 3.8041 -3.5517 0.9211 27 1 -0.3633 0.0000 1.0276 28 1 -0.3633 0.8901 -0.5138 29 1 -0.3633 -0.8900 -0.5139 30 1 2.3792 1.5834 -1.0276 31 1 1.6085 2.0284 0.5139 32 1 3.1500 1.1384 0.5138 33 1 4.0095 -0.6536 0.8889 34 1 4.0089 -0.6532 -0.8911 35 1 5.4496 -2.6043 -1.7289 36 1 5.6162 -6.9007 0.0741 37 1 7.7736 -7.1677 -1.9636 38 1 5.1477 -8.8194 -1.8471 39 1 6.2348 -8.5496 -3.2794 40 1 5.8720 -11.1914 -4.7830 41 1 8.4647 -8.7512 -0.2244 42 1 6.7539 -8.9645 0.3535 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031438754.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:50 Heat of formation + Delta-G solvation = 72.221054 kcal Electronic energy + Delta-G solvation = -26077.142023 eV Core-core repulsion = 22096.224488 eV Total energy + Delta-G solvation = -3980.917535 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.154 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.27217 -41.00264 -40.68974 -39.08555 -36.70500 -35.74012 -35.07066 -33.72982 -32.04379 -30.60033 -29.38158 -28.43885 -26.72140 -26.62021 -25.67777 -24.09415 -23.37446 -21.78815 -21.32025 -20.54079 -19.04473 -18.76400 -18.42726 -17.55668 -17.41609 -17.01284 -16.94707 -16.75678 -16.48593 -15.79946 -15.55201 -15.51889 -15.40378 -14.67534 -14.56794 -14.44242 -13.75361 -13.68399 -13.45096 -13.37856 -13.31113 -13.21549 -13.09578 -12.88508 -12.83813 -12.62180 -12.35346 -12.27616 -11.94000 -11.79777 -11.52749 -11.18766 -10.94925 -10.88382 -10.38348 -9.93099 -9.77401 -8.97655 -7.90929 -5.26905 0.11109 0.64842 0.94814 1.37622 1.46078 1.49360 1.58159 1.93309 2.10115 2.26240 2.50322 3.12990 3.22238 3.26679 3.40413 3.53881 3.81474 3.84807 3.96610 3.98251 4.26642 4.31317 4.36261 4.39146 4.49136 4.52092 4.70635 4.75957 4.79814 4.90082 4.91279 4.98845 5.14565 5.23299 5.28831 5.42437 5.48119 5.67072 5.88911 6.18113 6.47299 6.88295 6.92003 6.96069 7.16860 7.58394 8.51609 9.26105 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.032101 B = 0.002041 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.048639 B =13716.739412 C =13993.561725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.614 5.614 3 C 0.060 3.940 4 C 0.489 3.511 5 O -0.573 6.573 6 C 0.100 3.900 7 N -0.347 5.347 8 C 0.118 3.882 9 C -0.123 4.123 10 C 0.605 3.395 11 O -0.569 6.569 12 N -0.694 5.694 13 C 0.122 3.878 14 C 0.151 3.849 15 N -0.637 5.637 16 C -0.234 4.234 17 H 0.092 0.908 18 C -0.072 4.072 19 N -0.957 5.957 20 Si 0.986 3.014 21 H -0.286 1.286 22 H -0.295 1.295 23 H -0.263 1.263 24 C 0.121 3.879 25 N -0.228 5.228 26 N -0.067 5.067 27 H 0.058 0.942 28 H 0.103 0.897 29 H 0.048 0.952 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.165 0.835 34 H 0.186 0.814 35 H 0.247 0.753 36 H 0.413 0.587 37 H 0.105 0.895 38 H 0.019 0.981 39 H 0.039 0.961 40 H 0.249 0.751 41 H 0.071 0.929 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.699 33.866 10.129 35.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.347 5.347 3 C -0.081 4.081 4 C 0.275 3.725 5 O -0.452 6.452 6 C -0.023 4.023 7 N -0.132 5.132 8 C -0.038 4.038 9 C -0.262 4.262 10 C 0.390 3.610 11 O -0.448 6.448 12 N -0.344 5.344 13 C 0.016 3.984 14 C 0.024 3.976 15 N -0.365 5.365 16 C -0.363 4.363 17 H 0.110 0.890 18 C -0.265 4.265 19 N -0.605 5.605 20 Si 0.813 3.187 21 H -0.213 1.213 22 H -0.222 1.222 23 H -0.187 1.187 24 C -0.004 4.004 25 N -0.103 5.103 26 N -0.048 5.048 27 H 0.077 0.923 28 H 0.122 0.878 29 H 0.067 0.933 30 H 0.099 0.901 31 H 0.111 0.889 32 H 0.116 0.884 33 H 0.183 0.817 34 H 0.203 0.797 35 H 0.263 0.737 36 H 0.250 0.750 37 H 0.123 0.877 38 H 0.036 0.964 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.090 0.910 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.369 32.995 10.506 35.403 hybrid contribution -0.159 -1.087 -1.000 1.486 sum -7.528 31.908 9.506 34.134 Atomic orbital electron populations 1.21746 0.78532 1.03481 1.02332 1.47853 1.07791 1.06673 1.72426 1.22323 0.98144 0.83336 1.04258 1.20971 0.90649 0.83983 0.76853 1.90850 1.70688 1.33072 1.50576 1.22419 0.91409 0.76821 1.11602 1.50123 1.30935 1.12176 1.19957 1.23875 0.91663 0.92878 0.95423 1.21405 1.08678 0.95972 1.00127 1.17033 0.79795 0.81531 0.82621 1.90776 1.47525 1.79876 1.26636 1.45761 1.47529 1.09780 1.31314 1.23287 0.93691 0.86391 0.94981 1.22602 0.91880 0.85548 0.97559 1.46072 1.47834 1.18583 1.23966 1.19462 1.19154 0.93086 1.04549 0.88997 1.25772 0.99797 1.02950 0.97987 1.70052 1.34522 1.39730 1.16223 0.84969 0.78371 0.78668 0.76642 1.21305 1.22169 1.18738 1.23008 1.00160 0.86262 0.90971 1.74633 1.05164 1.19102 1.11364 1.82008 1.19067 0.90713 1.12968 0.92334 0.87811 0.93260 0.90053 0.88943 0.88419 0.81749 0.79663 0.73696 0.75032 0.87671 0.96355 0.94299 0.94257 0.91040 0.92281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.70 10.44 127.77 1.33 2.04 16 2 N -0.61 -4.65 3.27 -871.88 -2.85 -7.50 16 3 C 0.06 -0.19 10.24 127.77 1.31 1.12 16 4 C 0.49 7.23 7.71 87.66 0.68 7.90 16 5 O -0.57 -16.27 15.31 -3.03 -0.05 -16.32 16 6 C 0.10 0.65 5.57 85.64 0.48 1.13 16 7 N -0.35 -6.45 3.41 -350.84 -1.20 -7.64 16 8 C 0.12 2.31 11.27 83.85 0.95 3.25 16 9 C -0.12 -3.57 6.99 40.81 0.29 -3.29 16 10 C 0.60 21.02 7.82 86.69 0.68 21.69 16 11 O -0.57 -22.40 16.49 -4.01 -0.07 -22.47 16 12 N -0.69 -24.56 5.37 -450.54 -2.42 -26.98 16 13 C 0.12 5.07 4.40 46.75 0.21 5.28 16 14 C 0.15 7.87 7.33 86.44 0.63 8.50 16 15 N -0.64 -34.34 3.70 -716.60 -2.65 -36.99 16 16 C -0.23 -13.60 10.70 84.04 0.90 -12.70 16 17 H 0.09 4.99 7.83 -2.91 -0.02 4.97 16 18 C -0.07 -4.30 5.50 84.86 0.47 -3.83 16 19 N -0.96 -60.86 11.39 21.65 0.25 -60.62 16 20 Si 0.99 47.27 29.55 68.60 2.03 49.30 16 21 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 22 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 23 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 24 C 0.12 4.99 8.69 86.49 0.75 5.74 16 25 N -0.23 -7.21 12.04 -50.00 -0.60 -7.81 16 26 N -0.07 -1.93 12.89 37.02 0.48 -1.45 16 27 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.10 0.23 8.07 -2.39 -0.02 0.21 16 29 H 0.05 0.74 7.42 -2.39 -0.02 0.72 16 30 H 0.08 -0.46 8.14 -2.39 -0.02 -0.48 16 31 H 0.09 -0.46 8.07 -2.39 -0.02 -0.48 16 32 H 0.10 -0.74 6.44 -2.39 -0.02 -0.76 16 33 H 0.17 -0.10 7.40 -2.39 -0.02 -0.12 16 34 H 0.19 -0.72 8.05 -2.39 -0.02 -0.74 16 35 H 0.25 2.53 8.06 -2.91 -0.02 2.51 16 36 H 0.41 13.37 8.40 -92.71 -0.78 12.59 16 37 H 0.11 4.57 7.51 -2.39 -0.02 4.55 16 38 H 0.02 0.99 8.14 -2.39 -0.02 0.98 16 39 H 0.04 2.30 7.16 -2.39 -0.02 2.29 16 40 H 0.25 15.33 8.31 -92.71 -0.77 14.56 16 41 H 0.07 2.67 8.14 -2.38 -0.02 2.65 16 42 H 0.06 2.22 8.11 -2.39 -0.02 2.21 16 Total: -1.00 -94.69 364.80 1.86 -92.84 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: 0.28 Total: 8.80 kcal Atomic # 6 Polarization: 28.17 SS G_CDS: 8.66 Total: 36.83 kcal Atomic # 7 Polarization: -139.99 SS G_CDS: -9.00 Total: -148.99 kcal Atomic # 8 Polarization: -38.67 SS G_CDS: -0.11 Total: -38.78 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 2.03 Total: 49.30 kcal Total: -94.69 1.86 -92.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031438754.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.057 kcal (2) G-P(sol) polarization free energy of solvation -94.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds