Wall clock time and date at job start Fri Apr 10 2020 18:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35546 * 117.00065 * 2 1 4 4 C 1.39188 * 120.44132 * 179.97438 * 3 2 1 5 5 C 1.39192 * 118.41294 * 180.02562 * 4 3 2 6 6 O 1.35543 * 120.44595 * 180.02562 * 5 4 3 7 7 C 1.42906 * 117.00306 * 179.97438 * 6 5 4 8 8 N 1.32748 * 119.11273 * 0.02562 * 5 4 3 9 9 C 1.32428 * 120.80775 * 359.97438 * 8 5 4 10 10 C 1.48556 * 119.12643 * 179.97438 * 9 8 5 11 11 O 1.21462 * 120.00064 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99790 * 179.97438 * 10 9 8 13 13 C 1.46496 * 120.00258 * 179.97438 * 12 10 9 14 14 C 1.52993 * 109.47551 * 180.02562 * 13 12 10 15 15 C 1.53942 * 113.74441 * 273.74574 * 14 13 12 16 16 N 1.47815 * 86.03698 * 222.07927 * 15 14 13 17 17 C 1.36934 * 134.45917 * 204.63527 * 16 15 14 18 18 H 1.07993 * 120.00114 * 179.87030 * 17 16 15 19 19 C 1.38820 * 119.99790 * 359.87827 * 17 16 15 20 20 N 1.31617 * 119.99935 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99825 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47035 * 59.99619 * 21 19 17 23 23 H 1.48496 * 109.47065 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47163 * 299.99778 * 21 19 17 25 25 C 1.47582 * 91.05168 * 24.54860 * 16 15 14 26 26 N 1.32421 * 121.73736 * 0.27781 * 9 8 5 27 27 H 1.08996 * 109.46705 * 59.99831 * 1 2 3 28 28 H 1.08996 * 109.46729 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46879 * 299.99960 * 1 2 3 30 30 H 1.08001 * 120.79774 * 0.02562 * 4 3 2 31 31 H 1.09004 * 109.47197 * 180.02562 * 7 6 5 32 32 H 1.09004 * 109.46554 * 300.00099 * 7 6 5 33 33 H 1.09000 * 109.46854 * 59.99642 * 7 6 5 34 34 H 0.96999 * 120.00047 * 0.02562 * 12 10 9 35 35 H 1.09000 * 109.47024 * 300.00478 * 13 12 10 36 36 H 1.09004 * 109.46875 * 60.00324 * 13 12 10 37 37 H 1.09009 * 112.94141 * 45.33574 * 14 13 12 38 38 H 1.08999 * 113.77064 * 336.34490 * 15 14 13 39 39 H 1.09000 * 113.77520 * 107.74331 * 15 14 13 40 40 H 0.96998 * 119.99498 * 180.02562 * 20 19 17 41 41 H 1.08996 * 113.77054 * 221.15221 * 25 16 15 42 42 H 1.08996 * 113.77110 * 89.74868 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0445 1.2077 0.0000 4 6 3.4338 1.2912 0.0005 5 6 4.0215 2.5530 0.0011 6 8 5.3707 2.6823 0.0011 7 6 5.8952 4.0117 0.0011 8 7 3.2428 3.6282 0.0016 9 6 1.9238 3.5103 0.0010 10 6 1.0880 4.7384 0.0022 11 8 1.6160 5.8323 0.0031 12 7 -0.2560 4.6389 0.0012 13 6 -1.0803 5.8500 0.0029 14 6 -2.5597 5.4601 0.0019 15 6 -3.1353 5.2154 -1.4047 16 7 -4.3246 5.9571 -0.9354 17 6 -5.6454 5.9790 -1.2961 18 1 -6.3356 6.6290 -0.7791 19 6 -6.0970 5.1655 -2.3264 20 7 -5.2556 4.3737 -2.9567 21 14 -7.8989 5.1948 -2.8180 22 1 -8.2710 6.5650 -3.2532 23 1 -8.1225 4.2431 -3.9357 24 1 -8.7355 4.8002 -1.6563 25 6 -3.5178 6.6627 0.0792 26 7 1.3302 2.3265 0.0055 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 4.0415 0.3984 0.0005 31 1 6.9845 3.9725 0.0006 32 1 5.5504 4.5382 -0.8890 33 1 5.5504 4.5382 0.8910 34 1 -0.6777 3.7653 0.0001 35 1 -0.8604 6.4378 0.8940 36 1 -0.8594 6.4411 -0.8860 37 1 -2.7910 4.6684 0.7146 38 1 -2.5864 5.7222 -2.1984 39 1 -3.3292 4.1653 -1.6236 40 1 -5.5712 3.8056 -3.6768 41 1 -4.0163 6.7660 1.0429 42 1 -3.0813 7.5956 -0.2776 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031772392.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:53 Heat of formation + Delta-G solvation = 8.832964 kcal Electronic energy + Delta-G solvation = -26618.367549 eV Core-core repulsion = 22602.408549 eV Total energy + Delta-G solvation = -4015.959000 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.80460 -39.61291 -39.50578 -38.18544 -37.70909 -34.60192 -33.00314 -32.37703 -32.05063 -29.05241 -28.28581 -27.31186 -26.38927 -25.01908 -24.75527 -23.46091 -22.10752 -21.09911 -19.69411 -18.86555 -18.77503 -17.21863 -16.91205 -16.82597 -16.67660 -16.05765 -15.89359 -15.81893 -15.41641 -15.08025 -14.86585 -14.41107 -14.31636 -13.96814 -13.74751 -13.28867 -12.89582 -12.45992 -12.38785 -12.22314 -12.13746 -11.63524 -11.46094 -11.38554 -11.33834 -11.00383 -10.74544 -10.62005 -10.19620 -10.02950 -9.98950 -9.84005 -9.79154 -9.45421 -9.36893 -8.90226 -8.80666 -6.89288 -5.78038 -3.10120 0.20586 0.83277 2.10764 2.54836 2.68257 2.94493 3.38718 3.42947 3.43991 3.58986 3.61839 4.06932 4.44222 4.52028 4.72521 4.95353 5.01828 5.02834 5.04842 5.10532 5.13133 5.16616 5.28194 5.34073 5.38278 5.51639 5.62547 5.80237 5.98130 6.19570 6.31903 6.36489 6.47683 6.56483 6.61029 6.70840 6.77920 7.20569 7.33031 7.34627 7.53653 7.69013 7.96817 8.13870 9.03483 9.69731 10.58584 11.39039 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017639 B = 0.002702 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.977608 B =10360.884975 C =11516.149677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.294 6.294 3 C 0.390 3.610 4 C -0.253 4.253 5 C 0.385 3.615 6 O -0.295 6.295 7 C 0.035 3.965 8 N -0.544 5.544 9 C 0.370 3.630 10 C 0.580 3.420 11 O -0.507 6.507 12 N -0.694 5.694 13 C 0.129 3.871 14 C -0.153 4.153 15 C 0.169 3.831 16 N -0.613 5.613 17 C -0.223 4.223 18 H 0.079 0.921 19 C -0.008 4.008 20 N -0.922 5.922 21 Si 0.912 3.088 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.284 1.284 25 C 0.129 3.871 26 N -0.566 5.566 27 H 0.070 0.930 28 H 0.104 0.896 29 H 0.067 0.933 30 H 0.163 0.837 31 H 0.102 0.898 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.413 0.587 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.091 0.909 38 H 0.028 0.972 39 H 0.073 0.927 40 H 0.254 0.746 41 H 0.046 0.954 42 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.379 -7.810 7.792 22.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.198 6.198 3 C 0.205 3.795 4 C -0.277 4.277 5 C 0.200 3.800 6 O -0.199 6.199 7 C -0.059 4.059 8 N -0.279 5.279 9 C 0.098 3.902 10 C 0.360 3.640 11 O -0.379 6.379 12 N -0.346 5.346 13 C 0.006 3.994 14 C -0.173 4.173 15 C 0.043 3.957 16 N -0.339 5.339 17 C -0.351 4.351 18 H 0.097 0.903 19 C -0.205 4.205 20 N -0.569 5.569 21 Si 0.742 3.258 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.211 1.211 25 C 0.003 3.997 26 N -0.304 5.304 27 H 0.089 0.911 28 H 0.122 0.878 29 H 0.086 0.914 30 H 0.181 0.819 31 H 0.121 0.879 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.249 0.751 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.110 0.890 38 H 0.046 0.954 39 H 0.091 0.909 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 19.266 -6.812 7.599 21.802 hybrid contribution -0.845 -0.859 -0.474 1.295 sum 18.421 -7.671 7.125 21.188 Atomic orbital electron populations 1.23124 0.75418 1.04044 1.03657 1.86243 1.24224 1.22964 1.86405 1.19549 0.88488 0.84831 0.86640 1.20781 0.92797 0.98350 1.15780 1.19581 0.84927 0.88424 0.87030 1.86232 1.14738 1.32348 1.86592 1.23061 0.98829 0.80472 1.03588 1.67916 1.06143 1.32443 1.21348 1.22331 0.86920 0.90792 0.90120 1.17177 0.82284 0.85821 0.78694 1.90804 1.72689 1.26023 1.48380 1.45872 1.04592 1.11839 1.72299 1.21607 0.89820 0.85755 1.02266 1.23828 0.90517 1.00600 1.02396 1.22360 0.84922 0.98570 0.89815 1.45970 1.03282 1.45998 1.38636 1.18980 0.82226 1.19910 1.13951 0.90304 1.24780 0.97987 0.99309 0.98401 1.69800 1.33188 1.28330 1.25586 0.86202 0.84388 0.77310 0.77865 1.21200 1.21575 1.21091 1.22484 0.90269 0.93382 0.93600 1.68032 1.41213 0.98356 1.22778 0.91098 0.87765 0.91409 0.81928 0.87948 0.91445 0.91493 0.75090 0.91368 0.90835 0.89032 0.95441 0.90919 0.93628 0.93587 0.94565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.41 101.05 1.05 1.31 16 2 O -0.29 -2.96 10.49 -18.33 -0.19 -3.16 16 3 C 0.39 4.43 7.52 -16.81 -0.13 4.30 16 4 C -0.25 -2.64 10.09 -38.87 -0.39 -3.03 16 5 C 0.38 4.52 7.52 -16.80 -0.13 4.39 16 6 O -0.30 -2.99 10.49 -18.32 -0.19 -3.18 16 7 C 0.04 0.28 10.41 101.05 1.05 1.33 16 8 N -0.54 -7.53 9.06 -11.24 -0.10 -7.63 16 9 C 0.37 5.23 7.60 -157.13 -1.19 4.04 16 10 C 0.58 8.97 7.85 -12.00 -0.09 8.88 16 11 O -0.51 -9.19 16.86 5.40 0.09 -9.10 16 12 N -0.69 -9.85 5.54 -61.03 -0.34 -10.19 16 13 C 0.13 1.94 5.51 -4.05 -0.02 1.92 16 14 C -0.15 -2.65 3.93 -89.70 -0.35 -3.00 16 15 C 0.17 3.79 7.08 -2.84 -0.02 3.77 16 16 N -0.61 -15.40 3.70 -177.70 -0.66 -16.06 16 17 C -0.22 -6.20 10.70 -15.06 -0.16 -6.36 16 18 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 19 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 20 N -0.92 -26.91 11.39 55.49 0.63 -26.28 16 21 Si 0.91 21.93 29.55 -169.99 -5.02 16.91 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 C 0.13 2.53 8.51 -2.96 -0.03 2.50 16 26 N -0.57 -7.14 8.51 -11.24 -0.10 -7.23 16 27 H 0.07 0.63 8.12 -51.93 -0.42 0.20 16 28 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.54 8.11 -51.93 -0.42 0.12 16 30 H 0.16 1.30 8.06 -52.49 -0.42 0.88 16 31 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 33 H 0.07 0.56 8.12 -51.93 -0.42 0.14 16 34 H 0.41 5.39 7.77 -40.82 -0.32 5.07 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.07 1.19 7.88 -51.93 -0.41 0.78 16 37 H 0.09 1.51 8.14 -51.92 -0.42 1.09 16 38 H 0.03 0.65 7.92 -51.93 -0.41 0.23 16 39 H 0.07 1.79 7.17 -51.93 -0.37 1.42 16 40 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.04 0.68 8.10 -51.93 -0.42 0.26 16 LS Contribution 365.77 15.07 5.51 5.51 Total: -1.00 -33.28 365.77 -6.57 -39.85 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -5.70 Total: 0.84 kcal Atomic # 6 Polarization: 20.23 SS G_CDS: -0.51 Total: 19.72 kcal Atomic # 7 Polarization: -66.83 SS G_CDS: -0.56 Total: -67.39 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: -0.29 Total: -15.44 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.28 -6.57 -39.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031772392.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.684 kcal (2) G-P(sol) polarization free energy of solvation -33.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds