Wall clock time and date at job start Fri Apr 10 2020 18:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35546 * 117.00065 * 2 1 4 4 C 1.39188 * 120.44132 * 179.97438 * 3 2 1 5 5 C 1.39192 * 118.41294 * 180.02562 * 4 3 2 6 6 O 1.35543 * 120.44595 * 180.02562 * 5 4 3 7 7 C 1.42906 * 117.00306 * 179.97438 * 6 5 4 8 8 N 1.32748 * 119.11273 * 0.02562 * 5 4 3 9 9 C 1.32428 * 120.80775 * 359.97438 * 8 5 4 10 10 C 1.48556 * 119.12643 * 179.97438 * 9 8 5 11 11 O 1.21462 * 120.00064 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99790 * 179.97438 * 10 9 8 13 13 C 1.46496 * 120.00258 * 179.97438 * 12 10 9 14 14 C 1.52993 * 109.47551 * 180.02562 * 13 12 10 15 15 C 1.53942 * 113.74441 * 273.74574 * 14 13 12 16 16 N 1.47815 * 86.03698 * 222.07927 * 15 14 13 17 17 C 1.36934 * 134.45917 * 204.63527 * 16 15 14 18 18 H 1.07993 * 120.00114 * 179.87030 * 17 16 15 19 19 C 1.38820 * 119.99790 * 359.87827 * 17 16 15 20 20 N 1.31617 * 119.99935 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99825 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47035 * 59.99619 * 21 19 17 23 23 H 1.48496 * 109.47065 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47163 * 299.99778 * 21 19 17 25 25 C 1.47582 * 91.05168 * 24.54860 * 16 15 14 26 26 N 1.32421 * 121.73736 * 0.27781 * 9 8 5 27 27 H 1.08996 * 109.46705 * 59.99831 * 1 2 3 28 28 H 1.08996 * 109.46729 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46879 * 299.99960 * 1 2 3 30 30 H 1.08001 * 120.79774 * 0.02562 * 4 3 2 31 31 H 1.09004 * 109.47197 * 180.02562 * 7 6 5 32 32 H 1.09004 * 109.46554 * 300.00099 * 7 6 5 33 33 H 1.09000 * 109.46854 * 59.99642 * 7 6 5 34 34 H 0.96999 * 120.00047 * 0.02562 * 12 10 9 35 35 H 1.09000 * 109.47024 * 300.00478 * 13 12 10 36 36 H 1.09004 * 109.46875 * 60.00324 * 13 12 10 37 37 H 1.09009 * 112.94141 * 45.33574 * 14 13 12 38 38 H 1.08999 * 113.77064 * 336.34490 * 15 14 13 39 39 H 1.09000 * 113.77520 * 107.74331 * 15 14 13 40 40 H 0.96998 * 119.99498 * 180.02562 * 20 19 17 41 41 H 1.08996 * 113.77054 * 221.15221 * 25 16 15 42 42 H 1.08996 * 113.77110 * 89.74868 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0445 1.2077 0.0000 4 6 3.4338 1.2912 0.0005 5 6 4.0215 2.5530 0.0011 6 8 5.3707 2.6823 0.0011 7 6 5.8952 4.0117 0.0011 8 7 3.2428 3.6282 0.0016 9 6 1.9238 3.5103 0.0010 10 6 1.0880 4.7384 0.0022 11 8 1.6160 5.8323 0.0031 12 7 -0.2560 4.6389 0.0012 13 6 -1.0803 5.8500 0.0029 14 6 -2.5597 5.4601 0.0019 15 6 -3.1353 5.2154 -1.4047 16 7 -4.3246 5.9571 -0.9354 17 6 -5.6454 5.9790 -1.2961 18 1 -6.3356 6.6290 -0.7791 19 6 -6.0970 5.1655 -2.3264 20 7 -5.2556 4.3737 -2.9567 21 14 -7.8989 5.1948 -2.8180 22 1 -8.2710 6.5650 -3.2532 23 1 -8.1225 4.2431 -3.9357 24 1 -8.7355 4.8002 -1.6563 25 6 -3.5178 6.6627 0.0792 26 7 1.3302 2.3265 0.0055 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 4.0415 0.3984 0.0005 31 1 6.9845 3.9725 0.0006 32 1 5.5504 4.5382 -0.8890 33 1 5.5504 4.5382 0.8910 34 1 -0.6777 3.7653 0.0001 35 1 -0.8604 6.4378 0.8940 36 1 -0.8594 6.4411 -0.8860 37 1 -2.7910 4.6684 0.7146 38 1 -2.5864 5.7222 -2.1984 39 1 -3.3292 4.1653 -1.6236 40 1 -5.5712 3.8056 -3.6768 41 1 -4.0163 6.7660 1.0429 42 1 -3.0813 7.5956 -0.2776 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031772392.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:52 Heat of formation + Delta-G solvation = -18.104326 kcal Electronic energy + Delta-G solvation = -26619.535637 eV Core-core repulsion = 22602.408549 eV Total energy + Delta-G solvation = -4017.127089 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.73222 -40.82613 -40.29127 -39.65427 -38.73554 -35.94029 -34.27594 -33.84606 -33.15878 -30.66587 -29.00086 -28.37329 -27.60312 -26.54469 -26.19333 -24.33856 -23.75429 -22.24727 -21.03916 -20.01856 -19.75106 -18.73560 -18.21787 -17.77914 -17.64294 -17.08058 -16.96041 -16.81791 -16.71254 -16.45257 -16.03861 -15.73318 -15.44896 -15.15028 -15.02316 -14.67255 -14.42772 -13.98671 -13.27778 -13.10840 -13.07262 -12.90085 -12.84947 -12.83651 -12.56753 -12.44535 -12.36306 -12.23065 -11.84026 -11.60182 -11.33456 -11.14540 -10.95596 -10.90133 -10.83402 -10.26884 -10.09009 -8.89208 -7.88426 -5.21260 -0.77202 -0.07022 1.27915 1.44487 1.46837 1.49866 1.55853 1.63181 2.10194 2.49243 2.57568 2.73353 3.03642 3.32697 3.41779 3.61429 3.77328 3.86562 4.05711 4.14624 4.37361 4.37749 4.37975 4.43361 4.44702 4.46098 4.60330 4.76703 4.79488 4.85169 4.86357 4.89695 5.10820 5.25470 5.30427 5.46450 5.56817 5.67270 5.75438 5.95861 5.96641 6.23618 6.65464 6.94571 6.96243 7.63317 8.58989 9.28171 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017639 B = 0.002702 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.977608 B =10360.884975 C =11516.149677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.292 6.292 3 C 0.380 3.620 4 C -0.238 4.238 5 C 0.375 3.625 6 O -0.293 6.293 7 C 0.032 3.968 8 N -0.561 5.561 9 C 0.355 3.645 10 C 0.583 3.417 11 O -0.538 6.538 12 N -0.686 5.686 13 C 0.140 3.860 14 C -0.115 4.115 15 C 0.165 3.835 16 N -0.646 5.646 17 C -0.235 4.235 18 H 0.083 0.917 19 C -0.068 4.068 20 N -0.952 5.952 21 Si 0.977 3.023 22 H -0.280 1.280 23 H -0.295 1.295 24 H -0.274 1.274 25 C 0.128 3.872 26 N -0.567 5.567 27 H 0.060 0.940 28 H 0.131 0.869 29 H 0.068 0.932 30 H 0.190 0.810 31 H 0.137 0.863 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.419 0.581 35 H 0.088 0.912 36 H 0.063 0.937 37 H 0.106 0.894 38 H 0.012 0.988 39 H 0.044 0.956 40 H 0.248 0.752 41 H 0.064 0.936 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.973 -8.482 8.973 23.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.196 6.196 3 C 0.196 3.804 4 C -0.262 4.262 5 C 0.191 3.809 6 O -0.197 6.197 7 C -0.062 4.062 8 N -0.296 5.296 9 C 0.083 3.917 10 C 0.364 3.636 11 O -0.413 6.413 12 N -0.338 5.338 13 C 0.016 3.984 14 C -0.135 4.135 15 C 0.040 3.960 16 N -0.372 5.372 17 C -0.363 4.363 18 H 0.101 0.899 19 C -0.261 4.261 20 N -0.601 5.601 21 Si 0.806 3.194 22 H -0.207 1.207 23 H -0.221 1.221 24 H -0.200 1.200 25 C 0.003 3.997 26 N -0.304 5.304 27 H 0.079 0.921 28 H 0.149 0.851 29 H 0.087 0.913 30 H 0.207 0.793 31 H 0.155 0.845 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.256 0.744 35 H 0.106 0.894 36 H 0.081 0.919 37 H 0.124 0.876 38 H 0.030 0.970 39 H 0.063 0.937 40 H 0.057 0.943 41 H 0.082 0.918 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 19.870 -7.489 8.813 22.991 hybrid contribution -0.963 -0.666 -0.820 1.429 sum 18.907 -8.155 7.993 22.087 Atomic orbital electron populations 1.23316 0.74447 1.05722 1.03195 1.86265 1.25147 1.22041 1.86175 1.19764 0.89023 0.84863 0.86738 1.21062 0.92670 0.98828 1.13597 1.19806 0.85458 0.88428 0.87161 1.86252 1.13716 1.33428 1.86342 1.23260 1.00731 0.79493 1.02728 1.67838 1.06222 1.33800 1.21788 1.21956 0.87024 0.90696 0.92002 1.17328 0.82401 0.85979 0.77878 1.90779 1.73258 1.27298 1.49991 1.45761 1.04368 1.11882 1.71799 1.21415 0.88226 0.86029 1.02736 1.23420 0.91496 0.99794 0.98791 1.22280 0.84879 0.96488 0.92386 1.46394 1.03279 1.47519 1.40026 1.19392 0.83946 1.19325 1.13683 0.89896 1.25609 1.02056 0.99520 0.98898 1.69989 1.34819 1.29270 1.26062 0.85171 0.79749 0.77130 0.77389 1.20667 1.22114 1.20030 1.22694 0.89853 0.94197 0.92984 1.67964 1.41453 0.98332 1.22684 0.92073 0.85093 0.91335 0.79254 0.84459 0.92448 0.92198 0.74362 0.89427 0.91866 0.87639 0.96988 0.93725 0.94331 0.91791 0.93279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.41 113.37 1.18 1.59 16 2 O -0.29 -5.39 10.49 -88.51 -0.93 -6.32 16 3 C 0.38 8.14 7.52 84.78 0.64 8.78 16 4 C -0.24 -4.54 10.09 22.73 0.23 -4.31 16 5 C 0.38 8.41 7.52 84.78 0.64 9.04 16 6 O -0.29 -5.51 10.49 -88.48 -0.93 -6.43 16 7 C 0.03 0.47 10.41 113.37 1.18 1.65 16 8 N -0.56 -15.36 9.06 -302.16 -2.74 -18.09 16 9 C 0.35 9.95 7.60 137.71 1.05 11.00 16 10 C 0.58 17.91 7.85 87.00 0.68 18.60 16 11 O -0.54 -19.56 16.86 -3.60 -0.06 -19.62 16 12 N -0.69 -19.01 5.54 -465.30 -2.58 -21.59 16 13 C 0.14 4.03 5.51 86.38 0.48 4.50 16 14 C -0.12 -3.85 3.93 -10.14 -0.04 -3.89 16 15 C 0.16 7.52 7.08 86.44 0.61 8.13 16 16 N -0.65 -32.42 3.70 -716.12 -2.65 -35.07 16 17 C -0.24 -13.07 10.70 84.04 0.90 -12.17 16 18 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 19 C -0.07 -3.84 5.50 84.86 0.47 -3.38 16 20 N -0.95 -56.84 11.39 21.65 0.25 -56.60 16 21 Si 0.98 45.37 29.55 68.60 2.03 47.40 16 22 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 23 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 24 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 25 C 0.13 4.80 8.51 86.49 0.74 5.54 16 26 N -0.57 -13.90 8.51 -302.17 -2.57 -16.47 16 27 H 0.06 1.04 8.12 -2.39 -0.02 1.02 16 28 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.07 1.02 8.11 -2.39 -0.02 1.00 16 30 H 0.19 2.49 8.06 -2.91 -0.02 2.46 16 31 H 0.14 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.06 0.96 8.12 -2.38 -0.02 0.94 16 33 H 0.06 0.97 8.12 -2.39 -0.02 0.95 16 34 H 0.42 10.65 7.77 -92.71 -0.72 9.93 16 35 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.06 2.01 7.88 -2.38 -0.02 1.99 16 37 H 0.11 3.28 8.14 -2.38 -0.02 3.26 16 38 H 0.01 0.59 7.92 -2.39 -0.02 0.57 16 39 H 0.04 2.27 7.17 -2.39 -0.02 2.25 16 40 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 41 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 42 H 0.05 1.76 8.10 -2.39 -0.02 1.74 16 Total: -1.00 -72.34 365.77 -1.11 -73.45 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: 0.33 Total: 14.26 kcal Atomic # 6 Polarization: 36.34 SS G_CDS: 8.74 Total: 45.09 kcal Atomic # 7 Polarization: -137.52 SS G_CDS: -10.29 Total: -147.81 kcal Atomic # 8 Polarization: -30.46 SS G_CDS: -1.92 Total: -32.38 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -72.34 -1.11 -73.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031772392.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.344 kcal (2) G-P(sol) polarization free energy of solvation -72.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds