Wall clock time and date at job start Fri Apr 10 2020 18:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34779 * 120.00212 * 2 1 4 4 O 1.21279 * 120.00410 * 179.97438 * 3 2 1 5 5 C 1.50703 * 119.99541 * 359.97438 * 3 2 1 6 6 N 1.46500 * 109.46723 * 180.02562 * 5 3 2 7 7 C 1.34583 * 125.74923 * 124.71601 * 6 5 3 8 8 N 1.30874 * 107.62692 * 179.86102 * 7 6 5 9 9 C 1.34543 * 107.26757 * 0.39395 * 8 7 6 10 10 C 1.47875 * 126.04893 * 179.78338 * 9 8 7 11 11 N 1.34770 * 119.99750 * 359.95897 * 10 9 8 12 12 O 1.21557 * 119.99987 * 179.97438 * 10 9 8 13 13 N 1.28851 * 125.74841 * 305.02067 * 6 5 3 14 14 C 1.46502 * 120.00062 * 179.97438 * 2 1 3 15 15 H 1.09002 * 110.64304 * 181.69450 * 14 2 1 16 16 C 1.55162 * 110.71806 * 305.02635 * 14 2 1 17 17 C 1.54908 * 101.57856 * 153.86604 * 16 14 2 18 18 N 1.47422 * 104.83246 * 322.98909 * 17 16 14 19 19 C 1.36938 * 125.64660 * 204.16651 * 18 17 16 20 20 H 1.08000 * 119.99957 * 179.97438 * 19 18 17 21 21 C 1.38810 * 119.99990 * 359.95742 * 19 18 17 22 22 N 1.31619 * 120.00259 * 0.02562 * 21 19 18 23 23 Si 1.86808 * 119.99919 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46851 * 0.02562 * 23 21 19 25 25 H 1.48495 * 109.46871 * 120.00130 * 23 21 19 26 26 H 1.48497 * 109.46910 * 240.00106 * 23 21 19 27 27 C 1.47016 * 108.70618 * 24.13144 * 18 17 16 28 28 H 1.09002 * 109.47391 * 270.00122 * 1 2 3 29 29 H 1.09001 * 109.46813 * 150.00179 * 1 2 3 30 30 H 1.09004 * 109.47041 * 30.00306 * 1 2 3 31 31 H 1.08996 * 109.47057 * 299.99739 * 5 3 2 32 32 H 1.08996 * 109.47084 * 60.00703 * 5 3 2 33 33 H 1.07998 * 126.18776 * 359.97438 * 7 6 5 34 34 H 0.97003 * 120.00619 * 0.02562 * 11 10 9 35 35 H 0.97007 * 120.00155 * 180.02562 * 11 10 9 36 36 H 1.09000 * 111.00007 * 271.93754 * 16 14 2 37 37 H 1.08999 * 111.00652 * 35.79008 * 16 14 2 38 38 H 1.09007 * 110.36407 * 204.14755 * 17 16 14 39 39 H 1.09006 * 110.45937 * 81.88066 * 17 16 14 40 40 H 0.97003 * 120.00021 * 179.97438 * 22 21 19 41 41 H 1.09000 * 109.88510 * 239.52534 * 27 18 17 42 42 H 1.08998 * 109.88692 * 118.35500 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 -0.0006 6 7 2.3374 3.5858 -0.0011 7 6 2.3756 4.5872 -0.8993 8 7 3.3582 5.3837 -0.5634 9 6 3.9318 4.8674 0.5387 10 6 5.0872 5.4356 1.2659 11 7 5.6625 6.5745 0.8321 12 8 5.5183 4.8753 2.2548 13 7 3.2827 3.7683 0.8552 14 6 2.1975 -1.2687 0.0006 15 1 3.2726 -1.0917 0.0307 16 6 1.7506 -2.1601 1.1894 17 6 2.0638 -3.5780 0.6498 18 7 1.7324 -3.5173 -0.7854 19 6 1.3991 -4.5865 -1.5734 20 1 1.1718 -4.4370 -2.6185 21 6 1.3536 -5.8625 -1.0288 22 7 1.6304 -6.0448 0.2449 23 14 0.8996 -7.3212 -2.1040 24 1 0.6364 -6.8527 -3.4884 25 1 2.0206 -8.2950 -2.1161 26 1 -0.3185 -7.9753 -1.5621 27 6 1.8183 -2.1188 -1.2304 28 1 -0.3634 0.0000 1.0277 29 1 -0.3633 -0.8900 -0.5138 30 1 -0.3633 0.8900 -0.5139 31 1 0.7591 2.5298 -0.8908 32 1 0.7585 2.5302 0.8892 33 1 1.7137 4.7121 -1.7436 34 1 5.3185 7.0218 0.0430 35 1 6.4207 6.9472 1.3089 36 1 2.3372 -1.9434 2.0822 37 1 0.6849 -2.0434 1.3862 38 1 1.4430 -4.3204 1.1515 39 1 3.1195 -3.8129 0.7860 40 1 1.5983 -6.9365 0.6255 41 1 0.8541 -1.7944 -1.6220 42 1 2.5849 -2.0206 -1.9990 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033097301.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:00 Heat of formation + Delta-G solvation = 69.843278 kcal Electronic energy + Delta-G solvation = -26904.677380 eV Core-core repulsion = 22923.656737 eV Total energy + Delta-G solvation = -3981.020643 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.154 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.71460 -40.13831 -39.29472 -37.52659 -35.01921 -34.82458 -33.77103 -32.33220 -31.94182 -29.61461 -28.81240 -27.54863 -26.65903 -24.88200 -24.30600 -22.79461 -21.08365 -20.63918 -20.29406 -19.00467 -18.50980 -17.79482 -17.35001 -17.04158 -16.59875 -16.48371 -15.81217 -15.63016 -15.27751 -14.73901 -14.56520 -14.23360 -14.14969 -13.74712 -13.58973 -13.13632 -12.97720 -12.47804 -12.38492 -12.18595 -11.90789 -11.64689 -11.12656 -10.97902 -10.88411 -10.80968 -10.71773 -10.59454 -10.55732 -10.15354 -10.09720 -9.97229 -9.90183 -9.65976 -9.58422 -8.73672 -8.57256 -6.92993 -5.72806 -3.15843 1.20159 1.71087 1.83590 2.35992 2.81076 3.08626 3.21457 3.34931 3.40522 3.43116 3.86083 3.98263 4.13097 4.43021 4.44313 4.49183 4.75163 4.92694 5.23198 5.32741 5.42774 5.45930 5.58906 5.63693 5.70196 5.78035 5.99528 6.10281 6.14312 6.21689 6.40871 6.46825 6.48284 6.59541 6.81592 6.98159 7.29805 7.43835 7.54642 7.74381 7.76836 7.97861 8.01432 8.27196 9.13428 9.74010 10.37454 11.30889 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.029734 B = 0.002376 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.458847 B =11782.330205 C =12114.623912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.595 5.595 3 C 0.498 3.502 4 O -0.512 6.512 5 C 0.101 3.899 6 N -0.287 5.287 7 C 0.194 3.806 8 N -0.486 5.486 9 C 0.127 3.873 10 C 0.624 3.376 11 N -0.835 5.835 12 O -0.518 6.518 13 N -0.214 5.214 14 C 0.127 3.873 15 H 0.104 0.896 16 C -0.151 4.151 17 C 0.152 3.848 18 N -0.602 5.602 19 C -0.224 4.224 20 H 0.078 0.922 21 C -0.010 4.010 22 N -0.921 5.921 23 Si 0.916 3.084 24 H -0.280 1.280 25 H -0.290 1.290 26 H -0.290 1.290 27 C 0.130 3.870 28 H 0.062 0.938 29 H 0.090 0.910 30 H 0.066 0.934 31 H 0.140 0.860 32 H 0.129 0.871 33 H 0.228 0.772 34 H 0.410 0.590 35 H 0.410 0.590 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.111 0.889 39 H 0.016 0.984 40 H 0.253 0.747 41 H 0.028 0.972 42 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.399 24.163 -1.733 24.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.328 5.328 3 C 0.282 3.718 4 O -0.386 6.386 5 C -0.024 4.024 6 N -0.083 5.083 7 C -0.101 4.101 8 N -0.212 5.212 9 C -0.152 4.152 10 C 0.405 3.595 11 N -0.400 5.400 12 O -0.389 6.389 13 N -0.053 5.053 14 C 0.024 3.976 15 H 0.122 0.878 16 C -0.190 4.190 17 C 0.027 3.973 18 N -0.329 5.329 19 C -0.352 4.352 20 H 0.096 0.904 21 C -0.206 4.206 22 N -0.569 5.569 23 Si 0.746 3.254 24 H -0.205 1.205 25 H -0.217 1.217 26 H -0.217 1.217 27 C 0.003 3.997 28 H 0.080 0.920 29 H 0.108 0.892 30 H 0.085 0.915 31 H 0.158 0.842 32 H 0.147 0.853 33 H 0.244 0.756 34 H 0.240 0.760 35 H 0.242 0.758 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.128 0.872 39 H 0.034 0.966 40 H 0.064 0.936 41 H 0.046 0.954 42 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -3.333 23.330 -0.699 23.577 hybrid contribution -0.488 -0.551 -1.110 1.331 sum -3.821 22.779 -1.808 23.168 Atomic orbital electron populations 1.21921 0.79379 1.03818 1.02431 1.47816 1.07125 1.05647 1.72211 1.20146 0.88377 0.84909 0.78349 1.90836 1.13133 1.86434 1.48188 1.22023 0.89551 0.83160 1.07666 1.46965 1.22625 1.19663 1.19063 1.26475 0.99327 0.86566 0.97734 1.71187 1.08521 1.28719 1.12753 1.23590 1.01646 0.93634 0.96346 1.16238 0.80204 0.80541 0.82550 1.43415 1.36450 1.26302 1.33871 1.90902 1.62630 1.60104 1.25311 1.74468 0.99663 1.16232 1.14961 1.22331 0.97133 0.80762 0.97385 0.87771 1.23372 1.00677 0.98610 0.96349 1.21957 0.99059 0.91797 0.84460 1.44444 1.81033 1.00683 1.06717 1.19098 1.39043 0.84949 0.92160 0.90386 1.24809 1.01855 0.97457 0.96437 1.69789 1.55258 1.20853 1.11011 0.85984 0.77707 0.82516 0.79179 1.20519 1.21676 1.21680 1.21513 0.97927 0.86417 0.93834 0.91957 0.89167 0.91536 0.84247 0.85290 0.75578 0.75985 0.75810 0.91912 0.91617 0.87177 0.96623 0.93635 0.95387 0.95706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.60 8.87 59.85 0.53 1.13 16 2 N -0.59 -7.84 2.88 -171.83 -0.50 -8.33 16 3 C 0.50 6.65 7.69 -10.98 -0.08 6.56 16 4 O -0.51 -9.57 15.04 5.56 0.08 -9.48 16 5 C 0.10 0.78 5.48 -5.19 -0.03 0.75 16 6 N -0.29 -3.10 3.18 -63.77 -0.20 -3.31 16 7 C 0.19 1.62 12.57 -90.48 -1.14 0.49 16 8 N -0.49 -5.32 11.09 -12.36 -0.14 -5.46 16 9 C 0.13 1.76 7.96 -156.35 -1.24 0.51 16 10 C 0.62 8.39 8.10 -12.32 -0.10 8.29 16 11 N -0.83 -6.72 8.87 30.54 0.27 -6.45 16 12 O -0.52 -9.03 17.92 5.32 0.10 -8.93 16 13 N -0.21 -3.25 11.04 32.08 0.35 -2.90 16 14 C 0.13 2.23 3.36 -66.09 -0.22 2.01 16 15 H 0.10 2.07 6.99 -51.93 -0.36 1.70 16 16 C -0.15 -2.77 6.63 -24.58 -0.16 -2.93 16 17 C 0.15 3.61 5.89 -2.53 -0.01 3.59 16 18 N -0.60 -14.91 3.39 -170.08 -0.58 -15.49 16 19 C -0.22 -6.07 10.27 -15.06 -0.15 -6.22 16 20 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 21 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 22 N -0.92 -26.27 10.09 55.49 0.56 -25.71 16 23 Si 0.92 21.56 29.55 -169.99 -5.02 16.53 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 26 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 27 C 0.13 2.61 6.79 -3.07 -0.02 2.59 16 28 H 0.06 0.50 8.07 -51.93 -0.42 0.08 16 29 H 0.09 0.98 6.43 -51.93 -0.33 0.65 16 30 H 0.07 0.31 6.44 -51.93 -0.33 -0.03 16 31 H 0.14 0.38 7.32 -51.93 -0.38 0.00 16 32 H 0.13 0.70 8.11 -51.93 -0.42 0.28 16 33 H 0.23 0.60 8.06 -52.49 -0.42 0.18 16 34 H 0.41 2.48 8.54 -40.82 -0.35 2.13 16 35 H 0.41 2.41 8.93 -40.82 -0.36 2.04 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.07 1.12 7.10 -51.93 -0.37 0.75 16 38 H 0.11 2.91 5.87 -51.93 -0.30 2.60 16 39 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 41 H 0.03 0.52 6.29 -51.93 -0.33 0.20 16 42 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 352.19 15.07 5.31 5.31 Total: -1.00 -39.42 352.19 -7.70 -47.12 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -5.20 Total: 0.69 kcal Atomic # 6 Polarization: 19.14 SS G_CDS: -2.73 Total: 16.40 kcal Atomic # 7 Polarization: -67.41 SS G_CDS: -0.23 Total: -67.64 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: 0.18 Total: -18.42 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -39.42 -7.70 -47.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033097301.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.962 kcal (2) G-P(sol) polarization free energy of solvation -39.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds