Wall clock time and date at job start Fri Apr 10 2020 18:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34779 * 120.00212 * 2 1 4 4 O 1.21279 * 120.00410 * 179.97438 * 3 2 1 5 5 C 1.50703 * 119.99541 * 359.97438 * 3 2 1 6 6 N 1.46500 * 109.46723 * 180.02562 * 5 3 2 7 7 C 1.34583 * 125.74923 * 124.71601 * 6 5 3 8 8 N 1.30874 * 107.62692 * 179.86102 * 7 6 5 9 9 C 1.34543 * 107.26757 * 0.39395 * 8 7 6 10 10 C 1.47875 * 126.04893 * 179.78338 * 9 8 7 11 11 N 1.34770 * 119.99750 * 359.95897 * 10 9 8 12 12 O 1.21557 * 119.99987 * 179.97438 * 10 9 8 13 13 N 1.28851 * 125.74841 * 305.02067 * 6 5 3 14 14 C 1.46502 * 120.00062 * 179.97438 * 2 1 3 15 15 H 1.09002 * 110.64304 * 181.69450 * 14 2 1 16 16 C 1.55162 * 110.71806 * 305.02635 * 14 2 1 17 17 C 1.54908 * 101.57856 * 153.86604 * 16 14 2 18 18 N 1.47422 * 104.83246 * 322.98909 * 17 16 14 19 19 C 1.36938 * 125.64660 * 204.16651 * 18 17 16 20 20 H 1.08000 * 119.99957 * 179.97438 * 19 18 17 21 21 C 1.38810 * 119.99990 * 359.95742 * 19 18 17 22 22 N 1.31619 * 120.00259 * 0.02562 * 21 19 18 23 23 Si 1.86808 * 119.99919 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46851 * 0.02562 * 23 21 19 25 25 H 1.48495 * 109.46871 * 120.00130 * 23 21 19 26 26 H 1.48497 * 109.46910 * 240.00106 * 23 21 19 27 27 C 1.47016 * 108.70618 * 24.13144 * 18 17 16 28 28 H 1.09002 * 109.47391 * 270.00122 * 1 2 3 29 29 H 1.09001 * 109.46813 * 150.00179 * 1 2 3 30 30 H 1.09004 * 109.47041 * 30.00306 * 1 2 3 31 31 H 1.08996 * 109.47057 * 299.99739 * 5 3 2 32 32 H 1.08996 * 109.47084 * 60.00703 * 5 3 2 33 33 H 1.07998 * 126.18776 * 359.97438 * 7 6 5 34 34 H 0.97003 * 120.00619 * 0.02562 * 11 10 9 35 35 H 0.97007 * 120.00155 * 180.02562 * 11 10 9 36 36 H 1.09000 * 111.00007 * 271.93754 * 16 14 2 37 37 H 1.08999 * 111.00652 * 35.79008 * 16 14 2 38 38 H 1.09007 * 110.36407 * 204.14755 * 17 16 14 39 39 H 1.09006 * 110.45937 * 81.88066 * 17 16 14 40 40 H 0.97003 * 120.00021 * 179.97438 * 22 21 19 41 41 H 1.09000 * 109.88510 * 239.52534 * 27 18 17 42 42 H 1.08998 * 109.88692 * 118.35500 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 -0.0006 6 7 2.3374 3.5858 -0.0011 7 6 2.3756 4.5872 -0.8993 8 7 3.3582 5.3837 -0.5634 9 6 3.9318 4.8674 0.5387 10 6 5.0872 5.4356 1.2659 11 7 5.6625 6.5745 0.8321 12 8 5.5183 4.8753 2.2548 13 7 3.2827 3.7683 0.8552 14 6 2.1975 -1.2687 0.0006 15 1 3.2726 -1.0917 0.0307 16 6 1.7506 -2.1601 1.1894 17 6 2.0638 -3.5780 0.6498 18 7 1.7324 -3.5173 -0.7854 19 6 1.3991 -4.5865 -1.5734 20 1 1.1718 -4.4370 -2.6185 21 6 1.3536 -5.8625 -1.0288 22 7 1.6304 -6.0448 0.2449 23 14 0.8996 -7.3212 -2.1040 24 1 0.6364 -6.8527 -3.4884 25 1 2.0206 -8.2950 -2.1161 26 1 -0.3185 -7.9753 -1.5621 27 6 1.8183 -2.1188 -1.2304 28 1 -0.3634 0.0000 1.0277 29 1 -0.3633 -0.8900 -0.5138 30 1 -0.3633 0.8900 -0.5139 31 1 0.7591 2.5298 -0.8908 32 1 0.7585 2.5302 0.8892 33 1 1.7137 4.7121 -1.7436 34 1 5.3185 7.0218 0.0430 35 1 6.4207 6.9472 1.3089 36 1 2.3372 -1.9434 2.0822 37 1 0.6849 -2.0434 1.3862 38 1 1.4430 -4.3204 1.1515 39 1 3.1195 -3.8129 0.7860 40 1 1.5983 -6.9365 0.6255 41 1 0.8541 -1.7944 -1.6220 42 1 2.5849 -2.0206 -1.9990 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033097301.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:59 Heat of formation + Delta-G solvation = 37.615034 kcal Electronic energy + Delta-G solvation = -26906.074901 eV Core-core repulsion = 22923.656737 eV Total energy + Delta-G solvation = -3982.418165 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.154 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.48798 -41.24822 -40.30559 -39.04804 -36.35762 -35.66968 -34.64871 -34.06950 -32.82328 -31.27070 -30.00335 -28.76404 -27.74527 -26.45231 -25.48527 -23.58366 -22.20255 -22.14339 -21.62414 -20.17923 -19.30700 -18.99237 -18.72315 -18.14762 -17.62004 -17.37913 -16.95634 -16.65277 -16.52395 -16.04930 -15.84983 -15.56481 -15.21052 -15.05709 -14.51301 -14.39774 -14.13745 -13.82697 -13.64730 -13.40536 -13.06538 -13.00557 -12.92737 -12.74613 -12.42720 -12.22488 -11.98747 -11.84297 -11.67310 -11.60109 -11.52999 -11.41905 -11.12501 -10.85696 -10.78876 -10.49419 -9.71414 -8.94219 -7.79770 -5.25880 0.31073 0.99290 1.18492 1.41434 1.47062 1.48680 1.58571 1.85167 2.23749 2.32691 2.48979 3.13790 3.26440 3.31166 3.59313 3.68113 3.84558 3.90025 3.93116 4.04324 4.13939 4.19818 4.31117 4.57715 4.60863 4.70160 4.83216 4.84983 4.94189 5.04503 5.06329 5.25065 5.43906 5.46370 5.54007 5.58220 5.74504 5.74929 6.20873 6.26002 6.31252 6.96079 7.01971 7.06657 7.18121 7.73077 8.36442 9.22314 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.029734 B = 0.002376 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.458847 B =11782.330205 C =12114.623912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.592 5.592 3 C 0.492 3.508 4 O -0.576 6.576 5 C 0.106 3.894 6 N -0.293 5.293 7 C 0.215 3.785 8 N -0.498 5.498 9 C 0.108 3.892 10 C 0.616 3.384 11 N -0.805 5.805 12 O -0.573 6.573 13 N -0.269 5.269 14 C 0.142 3.858 15 H 0.073 0.927 16 C -0.131 4.131 17 C 0.155 3.845 18 N -0.622 5.622 19 C -0.237 4.237 20 H 0.085 0.915 21 C -0.067 4.067 22 N -0.950 5.950 23 Si 0.982 3.018 24 H -0.264 1.264 25 H -0.297 1.297 26 H -0.288 1.288 27 C 0.132 3.868 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.124 0.876 31 H 0.204 0.796 32 H 0.160 0.840 33 H 0.288 0.712 34 H 0.423 0.577 35 H 0.421 0.579 36 H 0.069 0.931 37 H 0.087 0.913 38 H 0.082 0.918 39 H -0.021 1.021 40 H 0.248 0.752 41 H 0.055 0.945 42 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.496 26.698 -3.784 27.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.324 5.324 3 C 0.280 3.720 4 O -0.455 6.455 5 C -0.017 4.017 6 N -0.089 5.089 7 C -0.080 4.080 8 N -0.224 5.224 9 C -0.171 4.171 10 C 0.397 3.603 11 N -0.371 5.371 12 O -0.449 6.449 13 N -0.109 5.109 14 C 0.037 3.963 15 H 0.092 0.908 16 C -0.170 4.170 17 C 0.030 3.970 18 N -0.349 5.349 19 C -0.366 4.366 20 H 0.102 0.898 21 C -0.259 4.259 22 N -0.600 5.600 23 Si 0.811 3.189 24 H -0.189 1.189 25 H -0.225 1.225 26 H -0.214 1.214 27 C 0.006 3.994 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.142 0.858 31 H 0.221 0.779 32 H 0.178 0.822 33 H 0.303 0.697 34 H 0.255 0.745 35 H 0.255 0.745 36 H 0.087 0.913 37 H 0.106 0.894 38 H 0.100 0.900 39 H -0.003 1.003 40 H 0.058 0.942 41 H 0.073 0.927 42 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges -6.478 25.947 -2.796 26.889 hybrid contribution 0.465 -1.283 -0.557 1.474 sum -6.013 24.664 -3.352 25.607 Atomic orbital electron populations 1.22298 0.76138 1.05722 1.04109 1.47798 1.08808 1.03942 1.71896 1.21176 0.87954 0.86509 0.76409 1.90825 1.16301 1.87449 1.50877 1.22462 0.88350 0.78656 1.12219 1.47185 1.22222 1.20694 1.18781 1.27665 0.98303 0.84531 0.97452 1.71176 1.09532 1.29653 1.11993 1.23658 1.02047 0.93942 0.97480 1.16530 0.80418 0.81266 0.82080 1.43212 1.35781 1.24427 1.33648 1.90860 1.64405 1.61947 1.27738 1.74380 1.01654 1.17333 1.17495 1.21724 0.96197 0.82824 0.95543 0.90839 1.23136 1.02046 0.95180 0.96644 1.21711 0.96200 0.94507 0.84625 1.44711 1.80827 1.02245 1.07071 1.19482 1.38373 0.85940 0.92767 0.89763 1.25667 1.02430 1.00128 0.97722 1.70038 1.56465 1.20890 1.12580 0.84952 0.76866 0.78862 0.78268 1.18863 1.22451 1.21448 1.21607 0.98625 0.84604 0.94567 0.90455 0.91041 0.85823 0.77878 0.82237 0.69672 0.74473 0.74476 0.91269 0.89448 0.89983 1.00317 0.94244 0.92745 0.97163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.76 8.87 127.77 1.13 1.89 16 2 N -0.59 -14.06 2.88 -815.92 -2.35 -16.41 16 3 C 0.49 11.94 7.69 87.66 0.67 12.62 16 4 O -0.58 -21.67 15.04 -3.02 -0.05 -21.72 16 5 C 0.11 1.08 5.48 85.63 0.47 1.55 16 6 N -0.29 -5.35 3.18 -355.65 -1.13 -6.48 16 7 C 0.21 2.63 12.57 180.30 2.27 4.90 16 8 N -0.50 -9.66 11.09 -193.03 -2.14 -11.81 16 9 C 0.11 2.93 7.96 137.13 1.09 4.02 16 10 C 0.62 16.92 8.10 86.80 0.70 17.63 16 11 N -0.80 -12.52 8.87 -175.58 -1.56 -14.08 16 12 O -0.57 -21.08 17.92 -3.90 -0.07 -21.15 16 13 N -0.27 -7.97 11.04 -52.43 -0.58 -8.55 16 14 C 0.14 4.99 3.36 46.18 0.16 5.14 16 15 H 0.07 3.06 6.99 -2.39 -0.02 3.04 16 16 C -0.13 -4.82 6.63 31.99 0.21 -4.61 16 17 C 0.16 7.67 5.89 86.86 0.51 8.18 16 18 N -0.62 -31.43 3.39 -692.00 -2.35 -33.78 16 19 C -0.24 -12.95 10.27 84.03 0.86 -12.09 16 20 H 0.08 4.38 7.83 -2.91 -0.02 4.35 16 21 C -0.07 -3.73 5.49 84.86 0.47 -3.27 16 22 N -0.95 -56.09 10.09 21.65 0.22 -55.87 16 23 Si 0.98 44.73 29.55 68.60 2.03 46.76 16 24 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 25 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 26 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 27 C 0.13 5.28 6.79 86.73 0.59 5.86 16 28 H 0.08 0.84 8.07 -2.39 -0.02 0.82 16 29 H 0.07 1.27 6.43 -2.39 -0.02 1.26 16 30 H 0.12 0.21 6.44 -2.38 -0.02 0.20 16 31 H 0.20 -0.60 7.32 -2.39 -0.02 -0.62 16 32 H 0.16 0.76 8.11 -2.39 -0.02 0.74 16 33 H 0.29 -0.57 8.06 -2.91 -0.02 -0.60 16 34 H 0.42 4.54 8.54 -92.71 -0.79 3.75 16 35 H 0.42 4.71 8.93 -92.70 -0.83 3.88 16 36 H 0.07 2.45 8.14 -2.39 -0.02 2.44 16 37 H 0.09 2.84 7.10 -2.39 -0.02 2.82 16 38 H 0.08 4.54 5.87 -2.38 -0.01 4.53 16 39 H -0.02 -1.17 8.14 -2.38 -0.02 -1.19 16 40 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 41 H 0.05 1.91 6.29 -2.39 -0.02 1.90 16 42 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 Total: -1.00 -96.55 352.19 0.63 -95.91 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -0.52 Total: 5.35 kcal Atomic # 6 Polarization: 32.70 SS G_CDS: 9.13 Total: 41.84 kcal Atomic # 7 Polarization: -137.09 SS G_CDS: -9.89 Total: -146.98 kcal Atomic # 8 Polarization: -42.76 SS G_CDS: -0.12 Total: -42.87 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -96.55 0.63 -95.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033097301.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.530 kcal (2) G-P(sol) polarization free energy of solvation -96.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds