Wall clock time and date at job start Fri Apr 10 2020 18:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34777 * 120.00345 * 2 1 4 4 O 1.21283 * 120.00463 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.99675 * 359.72090 * 3 2 1 6 6 N 1.46499 * 109.47257 * 180.27849 * 5 3 2 7 7 C 1.36161 * 119.85490 * 269.72534 * 6 5 3 8 8 C 1.35542 * 119.26223 * 179.77098 * 7 6 5 9 9 C 1.40739 * 118.99592 * 0.49218 * 8 7 6 10 10 O 1.35161 * 120.16536 * 179.72537 * 9 8 7 11 11 N 1.32433 * 119.67103 * 359.75381 * 9 8 7 12 12 C 1.33268 * 120.72775 * 359.97438 * 11 9 8 13 13 O 1.21973 * 119.47684 * 179.97438 * 12 11 9 14 14 C 1.46497 * 120.00129 * 179.97438 * 2 1 3 15 15 H 1.08996 * 110.64621 * 178.31865 * 14 2 1 16 16 C 1.55155 * 110.72079 * 54.97542 * 14 2 1 17 17 C 1.54909 * 101.58554 * 277.14221 * 16 14 2 18 18 N 1.47424 * 104.82843 * 322.98896 * 17 16 14 19 19 C 1.36941 * 125.64630 * 204.16193 * 18 17 16 20 20 H 1.08003 * 120.00014 * 179.97438 * 19 18 17 21 21 C 1.38807 * 119.99958 * 359.95985 * 19 18 17 22 22 N 1.31618 * 120.00304 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99950 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47220 * 0.02562 * 23 21 19 25 25 H 1.48508 * 109.47298 * 120.00128 * 23 21 19 26 26 H 1.48503 * 109.47410 * 239.99917 * 23 21 19 27 27 C 1.47022 * 108.70685 * 24.12881 * 18 17 16 28 28 H 1.08997 * 109.47115 * 90.00316 * 1 2 3 29 29 H 1.08995 * 109.47364 * 210.00706 * 1 2 3 30 30 H 1.09002 * 109.47090 * 330.00257 * 1 2 3 31 31 H 1.09009 * 109.47352 * 300.27556 * 5 3 2 32 32 H 1.08998 * 109.47585 * 60.27844 * 5 3 2 33 33 H 1.08001 * 120.36546 * 0.02562 * 7 6 5 34 34 H 1.07995 * 120.50337 * 180.25084 * 8 7 6 35 35 H 0.96704 * 113.99998 * 180.02562 * 10 9 8 36 36 H 1.08997 * 111.00199 * 35.21823 * 16 14 2 37 37 H 1.09004 * 111.00790 * 159.06303 * 16 14 2 38 38 H 1.08995 * 110.36859 * 204.15195 * 17 16 14 39 39 H 1.09000 * 110.45737 * 81.86989 * 17 16 14 40 40 H 0.97003 * 120.00473 * 180.02562 * 22 21 19 41 41 H 1.09002 * 109.88246 * 239.52432 * 27 18 17 42 42 H 1.08998 * 109.88178 * 118.35717 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 -0.0064 6 7 2.3374 3.5858 -0.0118 7 6 2.7736 4.1104 1.1666 8 6 3.6579 5.1374 1.1476 9 6 4.0931 5.6401 -0.0928 10 8 4.9703 6.6673 -0.1393 11 7 3.6384 5.1021 -1.2142 12 6 2.7732 4.0890 -1.1815 13 8 2.3688 3.6110 -2.2282 14 6 2.1975 -1.2687 0.0006 15 1 3.2726 -1.0917 -0.0294 16 6 1.7507 -2.1611 -1.1874 17 6 0.4718 -2.8225 -0.6159 18 7 0.7744 -3.0617 0.8070 19 6 0.1819 -4.0072 1.6009 20 1 0.4750 -4.1039 2.6359 21 6 -0.7955 -4.8410 1.0756 22 7 -1.1526 -4.7233 -0.1857 23 14 -1.6032 -6.1312 2.1584 24 1 -1.0287 -6.0598 3.5259 25 1 -3.0653 -5.8790 2.2224 26 1 -1.3583 -7.4802 1.5878 27 6 1.8181 -2.1176 1.2323 28 1 -0.3633 -0.0001 -1.0276 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 0.7588 2.5257 -0.8967 32 1 0.7587 2.5344 0.8833 33 1 2.4219 3.7099 2.1059 34 1 4.0202 5.5660 2.0703 35 1 5.2080 6.9413 -1.0358 36 1 1.5194 -1.5568 -2.0646 37 1 2.5076 -2.9102 -1.4197 38 1 0.2724 -3.7654 -1.1250 39 1 -0.3811 -2.1511 -0.7147 40 1 -1.8360 -5.3058 -0.5528 41 1 2.6908 -2.6654 1.5880 42 1 1.4348 -1.4729 2.0231 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033241540.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:04 Heat of formation + Delta-G solvation = -10.602234 kcal Electronic energy + Delta-G solvation = -27600.484691 eV Core-core repulsion = 23583.682918 eV Total energy + Delta-G solvation = -4016.801773 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.06363 -40.02569 -38.90493 -37.56172 -36.84037 -34.76957 -34.56372 -32.27092 -31.52219 -29.55153 -28.55669 -27.83076 -26.17382 -25.11166 -24.37997 -23.55755 -21.08090 -20.24058 -20.01587 -18.88542 -18.40271 -17.78859 -17.37736 -16.92156 -16.30367 -15.98982 -15.69733 -15.44224 -14.99597 -14.75696 -14.47634 -14.22393 -13.90628 -13.83275 -13.53528 -13.36230 -12.83086 -12.47142 -12.32451 -12.16289 -12.14795 -11.86865 -11.65191 -11.14470 -11.00004 -10.97458 -10.89202 -10.61168 -10.36640 -10.16349 -10.07096 -9.94184 -9.69287 -9.61073 -8.82014 -8.74243 -8.42538 -6.93884 -5.74302 -3.16954 0.39273 1.45088 2.03210 2.51813 2.88678 3.06042 3.33527 3.39794 3.41930 3.60496 3.95454 4.19707 4.34187 4.41602 4.44698 4.71774 4.91781 5.05078 5.13185 5.25993 5.35586 5.37451 5.42947 5.62303 5.73850 5.77243 5.83335 6.06513 6.10293 6.23197 6.26766 6.47279 6.52727 6.61799 6.74073 6.87952 7.37888 7.48798 7.54474 7.56521 7.77044 7.95939 8.12145 8.26802 9.12547 9.73005 10.36844 11.29081 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.034411 B = 0.002635 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.508088 B =10623.817592 C =10837.698363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.586 5.586 3 C 0.500 3.500 4 O -0.540 6.540 5 C 0.077 3.923 6 N -0.510 5.510 7 C 0.215 3.785 8 C -0.289 4.289 9 C 0.458 3.542 10 O -0.449 6.449 11 N -0.614 5.614 12 C 0.661 3.339 13 O -0.529 6.529 14 C 0.125 3.875 15 H 0.100 0.900 16 C -0.155 4.155 17 C 0.144 3.856 18 N -0.603 5.603 19 C -0.224 4.224 20 H 0.078 0.922 21 C -0.009 4.009 22 N -0.920 5.920 23 Si 0.914 3.086 24 H -0.280 1.280 25 H -0.290 1.290 26 H -0.290 1.290 27 C 0.129 3.871 28 H 0.060 0.940 29 H 0.108 0.892 30 H 0.059 0.941 31 H 0.133 0.867 32 H 0.125 0.875 33 H 0.183 0.817 34 H 0.165 0.835 35 H 0.416 0.584 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.106 0.894 39 H 0.023 0.977 40 H 0.252 0.748 41 H 0.033 0.967 42 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.375 20.275 4.033 21.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.318 5.318 3 C 0.286 3.714 4 O -0.417 6.417 5 C -0.050 4.050 6 N -0.225 5.225 7 C 0.079 3.921 8 C -0.315 4.315 9 C 0.256 3.744 10 O -0.244 6.244 11 N -0.371 5.371 12 C 0.363 3.637 13 O -0.403 6.403 14 C 0.022 3.978 15 H 0.118 0.882 16 C -0.194 4.194 17 C 0.020 3.980 18 N -0.330 5.330 19 C -0.352 4.352 20 H 0.095 0.905 21 C -0.205 4.205 22 N -0.569 5.569 23 Si 0.745 3.255 24 H -0.206 1.206 25 H -0.218 1.218 26 H -0.217 1.217 27 C 0.002 3.998 28 H 0.079 0.921 29 H 0.126 0.874 30 H 0.078 0.922 31 H 0.151 0.849 32 H 0.143 0.857 33 H 0.200 0.800 34 H 0.182 0.818 35 H 0.273 0.727 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.124 0.876 39 H 0.040 0.960 40 H 0.063 0.937 41 H 0.051 0.949 42 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 5.717 19.936 3.051 20.963 hybrid contribution -0.578 -0.792 0.753 1.236 sum 5.139 19.144 3.804 20.184 Atomic orbital electron populations 1.22213 0.78738 1.04359 1.02597 1.47766 1.07524 1.05304 1.71177 1.20495 0.88239 0.85362 0.77345 1.90720 1.13542 1.87044 1.50407 1.21927 0.91405 0.83990 1.07661 1.46070 1.39267 1.29586 1.07626 1.22350 0.89394 0.89535 0.90851 1.20569 1.07996 1.04692 0.98253 1.20423 0.81617 0.82279 0.90039 1.84981 1.56604 1.45408 1.37385 1.69644 1.22023 1.17600 1.27840 1.17259 0.81367 0.82092 0.82992 1.91020 1.58571 1.60797 1.29864 1.22204 0.96396 0.81775 0.97412 0.88242 1.23359 1.01601 0.98239 0.96235 1.22132 0.90475 1.00796 0.84630 1.44563 1.42708 1.37684 1.08015 1.19101 1.14840 1.08440 0.92823 0.90450 1.24783 0.99385 0.99823 0.96508 1.69803 1.33958 1.41030 1.12095 0.86010 0.78934 0.81316 0.79264 1.20565 1.21751 1.21723 1.21622 0.92863 0.91427 0.93902 0.92104 0.87395 0.92224 0.84868 0.85735 0.80038 0.81758 0.72662 0.91888 0.90916 0.87607 0.95968 0.93699 0.94878 0.95570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.86 8.33 59.84 0.50 1.36 16 2 N -0.59 -9.03 2.82 -171.84 -0.49 -9.52 16 3 C 0.50 7.47 7.74 -10.98 -0.09 7.39 16 4 O -0.54 -10.01 15.80 5.55 0.09 -9.92 16 5 C 0.08 0.81 4.38 -5.19 -0.02 0.79 16 6 N -0.51 -5.91 2.08 -123.16 -0.26 -6.17 16 7 C 0.21 1.62 10.40 -16.59 -0.17 1.45 16 8 C -0.29 -2.14 10.03 -39.60 -0.40 -2.53 16 9 C 0.46 4.49 7.91 -16.35 -0.13 4.36 16 10 O -0.45 -3.12 13.55 -17.18 -0.23 -3.36 16 11 N -0.61 -8.47 10.40 -16.72 -0.17 -8.65 16 12 C 0.66 10.33 8.34 -88.43 -0.74 9.59 16 13 O -0.53 -10.31 16.72 4.94 0.08 -10.23 16 14 C 0.13 2.24 3.58 -66.10 -0.24 2.00 16 15 H 0.10 1.83 6.99 -51.93 -0.36 1.47 16 16 C -0.15 -2.93 6.53 -24.58 -0.16 -3.09 16 17 C 0.14 3.24 5.00 -2.53 -0.01 3.22 16 18 N -0.60 -14.30 2.97 -170.07 -0.50 -14.80 16 19 C -0.22 -5.87 10.27 -15.06 -0.15 -6.03 16 20 H 0.08 1.99 7.83 -52.48 -0.41 1.57 16 21 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 22 N -0.92 -25.47 10.09 55.49 0.56 -24.91 16 23 Si 0.91 21.17 29.55 -169.99 -5.02 16.15 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 27 C 0.13 2.56 6.24 -3.06 -0.02 2.54 16 28 H 0.06 0.81 7.99 -51.93 -0.41 0.39 16 29 H 0.11 1.85 5.19 -51.93 -0.27 1.58 16 30 H 0.06 0.56 6.45 -51.93 -0.33 0.23 16 31 H 0.13 1.46 7.35 -51.92 -0.38 1.08 16 32 H 0.12 0.74 7.30 -51.93 -0.38 0.36 16 33 H 0.18 0.59 8.06 -52.49 -0.42 0.16 16 34 H 0.16 0.72 8.06 -52.49 -0.42 0.29 16 35 H 0.42 1.51 8.98 45.56 0.41 1.92 16 36 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 37 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.11 2.76 5.87 -51.93 -0.30 2.46 16 39 H 0.02 0.50 5.54 -51.93 -0.29 0.22 16 40 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 41 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.03 0.51 8.04 -51.93 -0.42 0.10 16 LS Contribution 345.95 15.07 5.21 5.21 Total: -1.00 -37.16 345.95 -6.86 -44.02 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -4.40 Total: 1.47 kcal Atomic # 6 Polarization: 22.43 SS G_CDS: -1.72 Total: 20.71 kcal Atomic # 7 Polarization: -63.19 SS G_CDS: -0.86 Total: -64.05 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: -0.06 Total: -23.51 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -37.16 -6.86 -44.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033241540.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.416 kcal (2) G-P(sol) polarization free energy of solvation -37.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds