Wall clock time and date at job start Fri Apr 10 2020 18:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34777 * 120.00345 * 2 1 4 4 O 1.21283 * 120.00463 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.99675 * 359.72090 * 3 2 1 6 6 N 1.46499 * 109.47257 * 180.27849 * 5 3 2 7 7 C 1.36161 * 119.85490 * 269.72534 * 6 5 3 8 8 C 1.35542 * 119.26223 * 179.77098 * 7 6 5 9 9 C 1.40739 * 118.99592 * 0.49218 * 8 7 6 10 10 O 1.35161 * 120.16536 * 179.72537 * 9 8 7 11 11 N 1.32433 * 119.67103 * 359.75381 * 9 8 7 12 12 C 1.33268 * 120.72775 * 359.97438 * 11 9 8 13 13 O 1.21973 * 119.47684 * 179.97438 * 12 11 9 14 14 C 1.46497 * 120.00129 * 179.97438 * 2 1 3 15 15 H 1.08996 * 110.64621 * 178.31865 * 14 2 1 16 16 C 1.55155 * 110.72079 * 54.97542 * 14 2 1 17 17 C 1.54909 * 101.58554 * 277.14221 * 16 14 2 18 18 N 1.47424 * 104.82843 * 322.98896 * 17 16 14 19 19 C 1.36941 * 125.64630 * 204.16193 * 18 17 16 20 20 H 1.08003 * 120.00014 * 179.97438 * 19 18 17 21 21 C 1.38807 * 119.99958 * 359.95985 * 19 18 17 22 22 N 1.31618 * 120.00304 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99950 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47220 * 0.02562 * 23 21 19 25 25 H 1.48508 * 109.47298 * 120.00128 * 23 21 19 26 26 H 1.48503 * 109.47410 * 239.99917 * 23 21 19 27 27 C 1.47022 * 108.70685 * 24.12881 * 18 17 16 28 28 H 1.08997 * 109.47115 * 90.00316 * 1 2 3 29 29 H 1.08995 * 109.47364 * 210.00706 * 1 2 3 30 30 H 1.09002 * 109.47090 * 330.00257 * 1 2 3 31 31 H 1.09009 * 109.47352 * 300.27556 * 5 3 2 32 32 H 1.08998 * 109.47585 * 60.27844 * 5 3 2 33 33 H 1.08001 * 120.36546 * 0.02562 * 7 6 5 34 34 H 1.07995 * 120.50337 * 180.25084 * 8 7 6 35 35 H 0.96704 * 113.99998 * 180.02562 * 10 9 8 36 36 H 1.08997 * 111.00199 * 35.21823 * 16 14 2 37 37 H 1.09004 * 111.00790 * 159.06303 * 16 14 2 38 38 H 1.08995 * 110.36859 * 204.15195 * 17 16 14 39 39 H 1.09000 * 110.45737 * 81.86989 * 17 16 14 40 40 H 0.97003 * 120.00473 * 180.02562 * 22 21 19 41 41 H 1.09002 * 109.88246 * 239.52432 * 27 18 17 42 42 H 1.08998 * 109.88178 * 118.35717 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 -0.0064 6 7 2.3374 3.5858 -0.0118 7 6 2.7736 4.1104 1.1666 8 6 3.6579 5.1374 1.1476 9 6 4.0931 5.6401 -0.0928 10 8 4.9703 6.6673 -0.1393 11 7 3.6384 5.1021 -1.2142 12 6 2.7732 4.0890 -1.1815 13 8 2.3688 3.6110 -2.2282 14 6 2.1975 -1.2687 0.0006 15 1 3.2726 -1.0917 -0.0294 16 6 1.7507 -2.1611 -1.1874 17 6 0.4718 -2.8225 -0.6159 18 7 0.7744 -3.0617 0.8070 19 6 0.1819 -4.0072 1.6009 20 1 0.4750 -4.1039 2.6359 21 6 -0.7955 -4.8410 1.0756 22 7 -1.1526 -4.7233 -0.1857 23 14 -1.6032 -6.1312 2.1584 24 1 -1.0287 -6.0598 3.5259 25 1 -3.0653 -5.8790 2.2224 26 1 -1.3583 -7.4802 1.5878 27 6 1.8181 -2.1176 1.2323 28 1 -0.3633 -0.0001 -1.0276 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 0.7588 2.5257 -0.8967 32 1 0.7587 2.5344 0.8833 33 1 2.4219 3.7099 2.1059 34 1 4.0202 5.5660 2.0703 35 1 5.2080 6.9413 -1.0358 36 1 1.5194 -1.5568 -2.0646 37 1 2.5076 -2.9102 -1.4197 38 1 0.2724 -3.7654 -1.1250 39 1 -0.3811 -2.1511 -0.7147 40 1 -1.8360 -5.3058 -0.5528 41 1 2.6908 -2.6654 1.5880 42 1 1.4348 -1.4729 2.0231 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033241540.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:04 Heat of formation + Delta-G solvation = -41.924259 kcal Electronic energy + Delta-G solvation = -27601.842916 eV Core-core repulsion = 23583.682918 eV Total energy + Delta-G solvation = -4018.159998 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.92521 -41.23505 -39.72377 -39.00394 -37.80937 -36.05506 -35.59945 -34.01489 -32.34203 -31.21722 -29.92871 -28.98142 -27.57146 -26.19683 -25.75742 -24.49240 -22.36074 -22.03492 -20.76386 -20.17993 -19.11785 -18.96016 -18.81807 -18.19553 -17.46613 -16.96861 -16.81638 -16.64724 -16.54847 -15.66581 -15.65103 -15.41172 -15.04053 -14.84988 -14.61756 -14.30237 -14.22707 -13.87608 -13.63794 -13.41267 -13.33364 -13.24737 -13.05699 -12.91649 -12.80556 -12.42579 -12.03520 -12.01330 -11.96615 -11.80762 -11.43939 -11.38057 -10.96603 -10.88763 -10.68059 -9.73560 -9.67200 -8.86263 -7.74782 -5.18789 -0.30439 0.68282 1.20387 1.39753 1.49515 1.51106 1.60306 1.93970 2.27603 2.51406 2.68821 3.28305 3.32791 3.36466 3.63061 3.70459 3.76732 3.85656 3.99497 4.07864 4.16449 4.25773 4.32360 4.44591 4.58021 4.61980 4.64814 4.68607 4.88271 4.91897 5.01237 5.12355 5.19458 5.33783 5.45578 5.53384 5.64712 5.83781 6.16591 6.30957 6.33047 6.66624 6.95334 7.04234 7.13169 7.79252 8.42800 9.26612 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.034411 B = 0.002635 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.508088 B =10623.817592 C =10837.698363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.588 5.588 3 C 0.499 3.501 4 O -0.579 6.579 5 C 0.082 3.918 6 N -0.513 5.513 7 C 0.214 3.786 8 C -0.283 4.283 9 C 0.456 3.544 10 O -0.440 6.440 11 N -0.656 5.656 12 C 0.650 3.350 13 O -0.592 6.592 14 C 0.138 3.862 15 H 0.096 0.904 16 C -0.144 4.144 17 C 0.153 3.847 18 N -0.618 5.618 19 C -0.232 4.232 20 H 0.080 0.920 21 C -0.062 4.062 22 N -0.945 5.945 23 Si 0.976 3.024 24 H -0.268 1.268 25 H -0.292 1.292 26 H -0.297 1.297 27 C 0.133 3.867 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.110 0.890 31 H 0.130 0.870 32 H 0.184 0.816 33 H 0.235 0.765 34 H 0.202 0.798 35 H 0.430 0.570 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.021 0.979 40 H 0.246 0.754 41 H 0.030 0.970 42 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.328 22.222 6.793 23.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.319 5.319 3 C 0.288 3.712 4 O -0.459 6.459 5 C -0.043 4.043 6 N -0.228 5.228 7 C 0.081 3.919 8 C -0.308 4.308 9 C 0.257 3.743 10 O -0.236 6.236 11 N -0.416 5.416 12 C 0.352 3.648 13 O -0.471 6.471 14 C 0.033 3.967 15 H 0.114 0.886 16 C -0.183 4.183 17 C 0.028 3.972 18 N -0.345 5.345 19 C -0.361 4.361 20 H 0.098 0.902 21 C -0.255 4.255 22 N -0.595 5.595 23 Si 0.805 3.195 24 H -0.193 1.193 25 H -0.219 1.219 26 H -0.225 1.225 27 C 0.007 3.993 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.128 0.872 31 H 0.148 0.852 32 H 0.201 0.799 33 H 0.251 0.749 34 H 0.219 0.781 35 H 0.289 0.711 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.038 0.962 40 H 0.056 0.944 41 H 0.048 0.952 42 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 5.708 21.954 5.884 23.435 hybrid contribution -0.444 -1.280 -0.040 1.356 sum 5.264 20.674 5.845 22.119 Atomic orbital electron populations 1.22237 0.77420 1.05081 1.02874 1.47775 1.08192 1.04668 1.71266 1.21219 0.87935 0.86307 0.75776 1.90702 1.15512 1.87675 1.52059 1.22097 0.90835 0.81102 1.10289 1.45955 1.39372 1.29549 1.07891 1.23278 0.88643 0.88973 0.91017 1.21087 1.07081 1.04142 0.98486 1.20843 0.81144 0.82129 0.90163 1.84985 1.55634 1.44339 1.38642 1.69492 1.23264 1.18538 1.30284 1.17469 0.81497 0.82397 0.83451 1.90954 1.61030 1.62918 1.32170 1.21868 0.96488 0.82735 0.95587 0.88582 1.23201 0.99775 0.98353 0.96993 1.21873 0.92052 0.99067 0.84165 1.44737 1.43332 1.38046 1.08372 1.19410 1.14674 1.08767 0.93275 0.90186 1.25527 1.00387 1.01865 0.97699 1.70040 1.34338 1.41719 1.13432 0.85045 0.77747 0.78461 0.78243 1.19264 1.21866 1.22452 1.21666 0.91626 0.91078 0.94978 0.92151 0.90841 0.87202 0.85182 0.79893 0.74900 0.78051 0.71104 0.90899 0.91229 0.91474 0.96156 0.94394 0.95197 0.94522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.64 8.33 127.77 1.06 2.71 16 2 N -0.59 -17.06 2.82 -815.98 -2.30 -19.36 16 3 C 0.50 13.84 7.74 87.66 0.68 14.52 16 4 O -0.58 -20.77 15.80 -3.04 -0.05 -20.82 16 5 C 0.08 1.48 4.38 85.63 0.38 1.85 16 6 N -0.51 -10.59 2.08 -661.77 -1.38 -11.97 16 7 C 0.21 2.30 10.40 83.40 0.87 3.17 16 8 C -0.28 -3.07 10.03 22.26 0.22 -2.85 16 9 C 0.46 8.03 7.91 85.21 0.67 8.71 16 10 O -0.44 -5.19 13.55 -84.39 -1.14 -6.33 16 11 N -0.66 -17.94 10.40 -438.81 -4.56 -22.51 16 12 C 0.65 20.14 8.34 179.58 1.50 21.64 16 13 O -0.59 -23.84 16.72 -5.23 -0.09 -23.93 16 14 C 0.14 4.82 3.58 46.18 0.17 4.99 16 15 H 0.10 3.49 6.99 -2.39 -0.02 3.47 16 16 C -0.14 -5.47 6.53 31.99 0.21 -5.26 16 17 C 0.15 7.01 5.00 86.86 0.43 7.45 16 18 N -0.62 -29.45 2.97 -691.98 -2.05 -31.51 16 19 C -0.23 -12.21 10.27 84.03 0.86 -11.35 16 20 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 21 C -0.06 -3.33 5.49 84.86 0.47 -2.86 16 22 N -0.95 -53.53 10.09 21.65 0.22 -53.32 16 23 Si 0.98 43.70 29.55 68.60 2.03 45.73 16 24 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 25 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 26 H -0.30 -13.54 7.11 99.48 0.71 -12.83 16 27 C 0.13 5.18 6.24 86.73 0.54 5.72 16 28 H 0.06 1.52 7.99 -2.39 -0.02 1.50 16 29 H 0.07 2.43 5.19 -2.39 -0.01 2.41 16 30 H 0.11 1.59 6.45 -2.39 -0.02 1.57 16 31 H 0.13 2.55 7.35 -2.38 -0.02 2.54 16 32 H 0.18 1.05 7.30 -2.39 -0.02 1.03 16 33 H 0.23 -0.08 8.06 -2.91 -0.02 -0.10 16 34 H 0.20 0.64 8.06 -2.91 -0.02 0.62 16 35 H 0.43 2.56 8.98 -74.05 -0.66 1.89 16 36 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 37 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 38 H 0.07 3.64 5.87 -2.39 -0.01 3.63 16 39 H 0.02 0.94 5.54 -2.39 -0.01 0.93 16 40 H 0.25 13.64 8.31 -92.71 -0.77 12.87 16 41 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.04 1.37 8.04 -2.39 -0.02 1.35 16 Total: -1.00 -86.34 345.95 -0.86 -87.20 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: 0.41 Total: 8.38 kcal Atomic # 6 Polarization: 40.37 SS G_CDS: 8.06 Total: 48.43 kcal Atomic # 7 Polarization: -128.58 SS G_CDS: -10.08 Total: -138.66 kcal Atomic # 8 Polarization: -49.80 SS G_CDS: -1.28 Total: -51.08 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -86.34 -0.86 -87.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033241540.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.278 kcal (2) G-P(sol) polarization free energy of solvation -86.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds