Wall clock time and date at job start Fri Apr 10 2020 18:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35509 * 116.99799 * 2 1 4 4 C 1.39642 * 120.49476 * 179.97438 * 3 2 1 5 5 C 1.39139 * 118.20674 * 180.02562 * 4 3 2 6 6 C 1.48454 * 120.51382 * 179.97438 * 5 4 3 7 7 O 1.21478 * 120.00176 * 0.02995 * 6 5 4 8 8 N 1.34777 * 119.99802 * 180.02562 * 6 5 4 9 9 C 1.46495 * 120.00357 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.47788 * 180.02562 * 9 8 6 11 11 H 1.09000 * 109.51223 * 59.99619 * 10 9 8 12 12 C 1.53296 * 109.51553 * 180.10113 * 10 9 8 13 13 N 1.47150 * 108.38344 * 172.22689 * 12 10 9 14 14 C 1.36938 * 120.98230 * 129.48600 * 13 12 10 15 15 H 1.08002 * 119.99497 * 206.22029 * 14 13 12 16 16 C 1.38809 * 119.99967 * 26.22274 * 14 13 12 17 17 N 1.31621 * 120.00384 * 16.90861 * 16 14 13 18 18 Si 1.86800 * 120.00000 * 196.90755 * 16 14 13 19 19 H 1.48499 * 109.47168 * 59.99846 * 18 16 14 20 20 H 1.48493 * 109.47229 * 180.02562 * 18 16 14 21 21 H 1.48508 * 109.46960 * 300.00160 * 18 16 14 22 22 C 1.47150 * 118.03381 * 309.45867 * 13 12 10 23 23 C 1.53294 * 108.38577 * 50.54179 * 22 13 12 24 24 O 1.42957 * 109.26402 * 307.71941 * 23 22 13 25 25 N 1.33281 * 118.96738 * 0.02562 * 5 4 3 26 26 C 1.31521 * 120.88553 * 359.97438 * 25 5 4 27 27 N 1.31894 * 121.99017 * 0.02562 * 26 25 5 28 28 H 1.08997 * 109.47768 * 299.99956 * 1 2 3 29 29 H 1.08998 * 109.46857 * 60.00593 * 1 2 3 30 30 H 1.08999 * 109.46705 * 179.97438 * 1 2 3 31 31 H 1.08001 * 120.89517 * 0.02562 * 4 3 2 32 32 H 0.97011 * 120.00183 * 359.97438 * 8 6 5 33 33 H 1.09008 * 109.46858 * 300.00124 * 9 8 6 34 34 H 1.08998 * 109.47368 * 59.99366 * 9 8 6 35 35 H 1.09002 * 109.67482 * 291.94618 * 12 10 9 36 36 H 1.08998 * 109.67958 * 52.46046 * 12 10 9 37 37 H 0.96990 * 120.00082 * 179.97438 * 17 16 14 38 38 H 1.08999 * 109.68106 * 170.25924 * 22 13 12 39 39 H 1.09003 * 109.68545 * 290.77935 * 22 13 12 40 40 H 1.08999 * 109.51346 * 67.61614 * 23 22 13 41 41 H 1.08998 * 109.51624 * 187.77560 * 23 22 13 42 42 H 1.08001 * 119.00805 * 180.02562 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 6 3.4380 1.2926 0.0005 5 6 4.0196 2.5566 0.0011 6 6 5.4965 2.7067 0.0022 7 8 6.2072 1.7215 0.0022 8 7 6.0489 3.9361 0.0032 9 6 7.5063 4.0844 0.0038 10 6 7.8679 5.5710 0.0056 11 1 7.4544 6.0452 0.8957 12 6 9.3928 5.7272 0.0036 13 7 9.7133 7.1511 -0.1835 14 6 10.5842 7.7939 0.6554 15 1 10.5057 8.8612 0.8004 16 6 11.5677 7.0735 1.3192 17 7 11.8869 5.8640 0.9100 18 14 12.4383 7.8209 2.7933 19 1 11.4434 8.1293 3.8518 20 1 13.4381 6.8569 3.3188 21 1 13.1258 9.0709 2.3808 22 6 9.0707 7.8638 -1.2990 23 6 7.5614 7.6036 -1.2337 24 8 7.3283 6.1950 -1.1621 25 7 3.2302 3.6304 0.0016 26 6 1.9209 3.5058 0.0010 27 7 1.3313 2.3260 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 4.0480 0.4014 0.0005 32 1 5.4814 4.7229 0.0028 33 1 7.9195 3.6093 0.8937 34 1 7.9201 3.6105 -0.8863 35 1 9.7984 5.3815 0.9545 36 1 9.8205 5.1438 -0.8117 37 1 12.5744 5.3608 1.3736 38 1 9.2630 8.9331 -1.2109 39 1 9.4664 7.4966 -2.2460 40 1 7.1468 8.0859 -0.3485 41 1 7.0834 8.0067 -2.1265 42 1 1.3100 4.3964 0.0010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035367408.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:11 Heat of formation + Delta-G solvation = -58.870103 kcal Electronic energy + Delta-G solvation = -26647.272508 eV Core-core repulsion = 22628.377683 eV Total energy + Delta-G solvation = -4018.894825 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.50356 -40.88025 -40.00775 -39.41833 -36.51039 -35.94852 -34.58262 -33.24226 -32.98121 -32.44975 -29.22700 -28.69319 -27.58918 -25.66810 -25.38662 -24.97995 -23.29993 -22.16199 -21.42413 -19.99070 -19.41446 -18.90717 -17.62508 -17.51361 -17.36524 -17.21082 -16.86405 -16.62861 -16.29662 -16.08376 -15.98472 -15.62719 -15.47963 -15.11744 -15.03821 -15.01840 -14.56814 -14.44485 -13.79034 -13.18345 -12.99128 -12.98715 -12.71097 -12.64102 -12.52791 -12.18887 -12.11684 -12.01861 -11.87861 -11.68422 -11.55290 -11.28833 -10.80687 -10.65590 -10.53491 -10.36821 -10.23562 -8.74394 -7.90391 -5.37618 -0.72252 -0.14720 1.47107 1.49604 1.51512 1.55899 1.56840 2.00740 2.48344 2.65953 2.73505 2.83809 2.94755 3.24310 3.49014 3.55244 3.75419 3.97609 4.06103 4.08655 4.27773 4.40072 4.40302 4.44839 4.46532 4.52559 4.59713 4.68036 4.71478 4.81217 4.97428 4.99931 5.08577 5.19972 5.24515 5.52437 5.54000 5.61046 5.92383 6.27263 6.30986 6.33939 6.79052 6.94671 7.06530 7.75439 8.29066 9.15389 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.024588 B = 0.002427 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.501208 B =11535.163068 C =12058.550322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.307 6.307 3 C 0.364 3.636 4 C -0.193 4.193 5 C 0.155 3.845 6 C 0.566 3.434 7 O -0.558 6.558 8 N -0.682 5.682 9 C 0.139 3.861 10 C 0.076 3.924 11 H 0.065 0.935 12 C 0.159 3.841 13 N -0.614 5.614 14 C -0.266 4.266 15 H 0.074 0.926 16 C -0.051 4.051 17 N -0.935 5.935 18 Si 0.970 3.030 19 H -0.276 1.276 20 H -0.296 1.296 21 H -0.275 1.275 22 C 0.102 3.898 23 C 0.057 3.943 24 O -0.390 6.390 25 N -0.526 5.526 26 C 0.341 3.659 27 N -0.563 5.563 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.128 0.872 31 H 0.163 0.837 32 H 0.422 0.578 33 H 0.085 0.915 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.002 0.998 37 H 0.252 0.748 38 H 0.072 0.928 39 H 0.016 0.984 40 H 0.054 0.946 41 H 0.121 0.879 42 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.192 -5.812 -1.697 25.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.210 6.210 3 C 0.175 3.825 4 C -0.218 4.218 5 C 0.011 3.989 6 C 0.350 3.650 7 O -0.436 6.436 8 N -0.333 5.333 9 C 0.015 3.985 10 C 0.016 3.984 11 H 0.083 0.917 12 C 0.032 3.968 13 N -0.338 5.338 14 C -0.396 4.396 15 H 0.092 0.908 16 C -0.246 4.246 17 N -0.581 5.581 18 Si 0.798 3.202 19 H -0.201 1.201 20 H -0.222 1.222 21 H -0.201 1.201 22 C -0.024 4.024 23 C -0.020 4.020 24 O -0.309 6.309 25 N -0.247 5.247 26 C 0.054 3.946 27 N -0.295 5.295 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.146 0.854 31 H 0.181 0.819 32 H 0.260 0.740 33 H 0.103 0.897 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.020 0.980 37 H 0.061 0.939 38 H 0.091 0.909 39 H 0.034 0.966 40 H 0.073 0.927 41 H 0.139 0.861 42 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -25.053 -6.200 -1.783 25.870 hybrid contribution 1.278 -0.040 0.750 1.483 sum -23.774 -6.240 -1.032 24.601 Atomic orbital electron populations 1.23301 0.74298 1.05555 1.03208 1.86270 1.25596 1.23052 1.86095 1.20086 0.88965 0.85902 0.87503 1.21919 0.93465 1.00271 1.06103 1.21102 0.93833 0.89545 0.94426 1.17985 0.86259 0.83600 0.77173 1.90799 1.62444 1.38995 1.51326 1.45654 1.07888 1.08269 1.71496 1.21292 0.79676 0.94578 1.02923 1.22769 0.95324 0.91720 0.88597 0.91709 1.21093 0.90314 0.85139 1.00215 1.44333 1.50720 1.07503 1.31275 1.19511 1.07528 0.93352 1.19212 0.90846 1.25838 0.97796 0.97790 1.03189 1.70166 1.33091 1.13583 1.41238 0.85301 0.77825 0.77398 0.79681 1.20144 1.22184 1.20061 1.21830 0.93472 0.97180 0.89882 1.23080 0.95268 0.80911 1.02747 1.87798 1.77539 1.22448 1.43120 1.68402 1.07554 1.32331 1.16403 1.25549 0.87502 0.94819 0.86776 1.68178 1.41726 0.99342 1.20209 0.91450 0.91455 0.85416 0.81915 0.73988 0.89686 0.91401 0.91301 0.97959 0.93912 0.90925 0.96637 0.92745 0.86141 0.73702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.41 113.37 1.18 1.47 16 2 O -0.31 -5.35 10.49 -88.12 -0.92 -6.27 16 3 C 0.36 7.27 7.54 84.91 0.64 7.91 16 4 C -0.19 -4.42 9.68 22.83 0.22 -4.20 16 5 C 0.15 3.85 6.79 41.87 0.28 4.14 16 6 C 0.57 17.11 7.83 86.97 0.68 17.79 16 7 O -0.56 -20.22 16.42 -3.65 -0.06 -20.28 16 8 N -0.68 -19.94 5.44 -465.39 -2.53 -22.47 16 9 C 0.14 4.72 5.37 86.38 0.46 5.18 16 10 C 0.08 2.80 2.86 30.69 0.09 2.89 16 11 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 12 C 0.16 7.60 4.73 86.35 0.41 8.01 16 13 N -0.61 -30.43 3.05 -697.55 -2.13 -32.56 16 14 C -0.27 -14.32 9.65 84.03 0.81 -13.51 16 15 H 0.07 3.79 7.88 -2.91 -0.02 3.76 16 16 C -0.05 -2.78 4.95 84.86 0.42 -2.36 16 17 N -0.94 -54.82 11.14 21.65 0.24 -54.57 16 18 Si 0.97 44.06 29.59 68.60 2.03 46.09 16 19 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 20 H -0.30 -13.61 7.11 99.48 0.71 -12.90 16 21 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 22 C 0.10 4.08 6.74 86.35 0.58 4.66 16 23 C 0.06 1.83 6.98 72.08 0.50 2.33 16 24 O -0.39 -13.71 10.14 -148.98 -1.51 -15.22 16 25 N -0.53 -10.99 9.70 -189.36 -1.84 -12.82 16 26 C 0.34 5.29 12.27 180.94 2.22 7.51 16 27 N -0.56 -9.82 9.36 -313.01 -2.93 -12.75 16 28 H 0.07 0.62 8.12 -2.39 -0.02 0.60 16 29 H 0.07 0.62 8.12 -2.39 -0.02 0.60 16 30 H 0.13 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.16 3.73 7.73 -2.91 -0.02 3.71 16 32 H 0.42 11.09 7.74 -92.70 -0.72 10.37 16 33 H 0.09 2.92 8.14 -2.38 -0.02 2.90 16 34 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 35 H 0.07 3.66 6.14 -2.39 -0.01 3.64 16 36 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 37 H 0.25 14.36 8.31 -92.72 -0.77 13.59 16 38 H 0.07 2.72 7.96 -2.39 -0.02 2.70 16 39 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.12 2.96 8.14 -2.39 -0.02 2.94 16 42 H 0.25 1.58 8.06 -2.91 -0.02 1.56 16 Total: -1.00 -69.77 357.62 -0.81 -70.59 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: 0.34 Total: 18.46 kcal Atomic # 6 Polarization: 33.31 SS G_CDS: 8.50 Total: 41.81 kcal Atomic # 7 Polarization: -125.99 SS G_CDS: -9.19 Total: -135.18 kcal Atomic # 8 Polarization: -39.28 SS G_CDS: -2.49 Total: -41.77 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -69.77 -0.81 -70.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035367408.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.716 kcal (2) G-P(sol) polarization free energy of solvation -69.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds