Wall clock time and date at job start Fri Apr 10 2020 18:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35727 * 117.00066 * 2 1 4 4 C 1.39455 * 120.80772 * 180.02562 * 3 2 1 5 5 N 1.31955 * 119.08041 * 179.97438 * 4 3 2 6 6 C 1.32537 * 120.83848 * 359.97438 * 5 4 3 7 7 C 1.48291 * 119.10804 * 180.02562 * 6 5 4 8 8 O 1.21502 * 120.00213 * 359.97438 * 7 6 5 9 9 N 1.34778 * 119.99946 * 180.02562 * 7 6 5 10 10 C 1.46502 * 120.00416 * 180.02562 * 9 7 6 11 11 C 1.52995 * 109.47108 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.51341 * 59.99757 * 11 10 9 13 13 C 1.53298 * 109.50955 * 180.09946 * 11 10 9 14 14 N 1.47154 * 108.38175 * 172.22802 * 13 11 10 15 15 C 1.36938 * 120.98248 * 129.49236 * 14 13 11 16 16 H 1.08001 * 119.99820 * 206.21798 * 15 14 13 17 17 C 1.38806 * 120.00344 * 26.20638 * 15 14 13 18 18 N 1.31624 * 119.99835 * 16.92973 * 17 15 14 19 19 Si 1.86798 * 120.00239 * 196.92290 * 17 15 14 20 20 H 1.48491 * 109.47187 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47228 * 120.00525 * 19 17 15 22 22 H 1.48505 * 109.47282 * 240.00102 * 19 17 15 23 23 C 1.47148 * 118.03567 * 309.45821 * 14 13 11 24 24 C 1.53299 * 108.38254 * 50.53930 * 23 14 13 25 25 O 1.42951 * 109.26728 * 307.72393 * 24 23 14 26 26 N 1.32535 * 121.77655 * 0.02562 * 6 5 4 27 27 C 1.31951 * 120.84003 * 359.97438 * 26 6 5 28 28 H 1.09001 * 109.47326 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47017 * 299.99789 * 1 2 3 30 30 H 1.08991 * 109.47187 * 59.99936 * 1 2 3 31 31 H 1.07994 * 120.45659 * 0.24893 * 4 3 2 32 32 H 0.97007 * 119.99846 * 359.97438 * 9 7 6 33 33 H 1.08999 * 109.46561 * 299.99360 * 10 9 7 34 34 H 1.08998 * 109.47246 * 59.98927 * 10 9 7 35 35 H 1.09005 * 109.68169 * 291.94547 * 13 11 10 36 36 H 1.08993 * 109.68180 * 52.46625 * 13 11 10 37 37 H 0.97006 * 120.00090 * 179.97438 * 18 17 15 38 38 H 1.08998 * 109.68164 * 170.26347 * 23 14 13 39 39 H 1.09003 * 109.68696 * 290.78113 * 23 14 13 40 40 H 1.09000 * 109.51104 * 67.62146 * 24 23 14 41 41 H 1.08997 * 109.51112 * 187.77062 * 24 23 14 42 42 H 1.07999 * 120.46023 * 179.97438 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 3.4367 1.3019 -0.0005 5 7 4.0000 2.4952 -0.0010 6 6 3.2610 3.5954 -0.0015 7 6 3.9344 4.9166 -0.0027 8 8 5.1477 4.9802 -0.0026 9 7 3.2004 6.0470 -0.0027 10 6 3.8655 7.3524 -0.0044 11 6 2.8117 8.4616 -0.0046 12 1 2.1891 8.3726 0.8856 13 6 3.5067 9.8280 -0.0089 14 7 2.4835 10.8685 -0.1979 15 6 2.4151 11.9502 0.6389 16 1 1.4756 12.4629 0.7830 17 6 3.5533 12.3877 1.3023 18 7 4.7429 12.0000 0.8938 19 14 3.3966 13.5267 2.7745 20 1 1.9618 13.8114 3.0296 21 1 3.9917 12.8759 3.9694 22 1 4.1120 14.7977 2.4954 23 6 1.5364 10.7126 -1.3133 24 6 0.9374 9.3031 -1.2455 25 8 1.9951 8.3442 -1.1721 26 7 1.9366 3.5466 -0.0011 27 6 1.3024 2.3895 -0.0006 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 4.0447 0.4094 -0.0050 32 1 2.2316 5.9963 -0.0023 33 1 4.4891 7.4434 0.8849 34 1 4.4874 7.4421 -0.8950 35 1 4.0170 9.9833 0.9418 36 1 4.2288 9.8700 -0.8242 37 1 5.5384 12.3060 1.3571 38 1 0.7419 11.4537 -1.2265 39 1 2.0596 10.8446 -2.2604 40 1 0.3073 9.2175 -0.3602 41 1 0.3397 9.1183 -2.1380 42 1 0.2229 2.3568 0.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035439414.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:18 Heat of formation + Delta-G solvation = -29.316262 kcal Electronic energy + Delta-G solvation = -26688.976169 eV Core-core repulsion = 22671.362894 eV Total energy + Delta-G solvation = -4017.613275 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.77503 -39.68239 -38.83734 -38.22940 -34.97308 -34.42236 -34.04314 -31.88536 -31.30224 -30.73560 -28.44061 -27.39132 -25.95510 -25.06530 -24.22281 -23.26765 -21.81071 -20.94790 -19.74430 -18.81945 -18.51687 -18.25798 -16.95046 -16.68625 -16.02772 -15.81225 -15.53696 -15.33638 -15.12271 -14.94636 -14.33959 -14.19602 -14.08571 -13.98486 -13.73418 -13.24324 -12.93075 -12.88179 -12.79309 -12.31911 -12.05114 -11.88219 -11.52535 -11.38840 -11.11003 -10.86117 -10.72141 -10.41917 -10.25054 -10.12288 -9.95941 -9.66983 -9.64385 -9.24337 -9.07781 -8.84337 -8.55656 -6.76352 -5.85089 -3.28808 0.17098 0.57831 2.41032 2.56154 2.85042 3.33979 3.41866 3.43862 3.60063 3.60609 3.72196 4.11095 4.20658 4.30772 4.43575 4.52702 4.53677 4.78485 4.90307 5.17728 5.19348 5.35204 5.52672 5.58326 5.63515 5.86656 5.94020 6.01883 6.11897 6.23048 6.24081 6.35759 6.49753 6.57676 6.62511 6.78357 7.06916 7.37701 7.47881 7.70652 7.74490 7.84874 8.25340 8.32521 9.10125 9.73134 10.30105 11.23025 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.021679 B = 0.002496 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.274696 B =11216.727762 C =11701.688212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.299 6.299 3 C 0.040 3.960 4 C 0.123 3.877 5 N -0.428 5.428 6 C 0.248 3.752 7 C 0.582 3.418 8 O -0.510 6.510 9 N -0.696 5.696 10 C 0.132 3.868 11 C 0.055 3.945 12 H 0.057 0.943 13 C 0.152 3.848 14 N -0.594 5.594 15 C -0.256 4.256 16 H 0.069 0.931 17 C 0.002 3.998 18 N -0.901 5.901 19 Si 0.904 3.096 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.289 1.289 23 C 0.109 3.891 24 C 0.051 3.949 25 O -0.389 6.389 26 N -0.454 5.454 27 C 0.065 3.935 28 H 0.109 0.891 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.184 0.816 32 H 0.412 0.588 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.097 0.903 36 H 0.032 0.968 37 H 0.256 0.744 38 H 0.062 0.938 39 H 0.027 0.973 40 H 0.043 0.957 41 H 0.082 0.918 42 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.795 -23.247 -1.869 25.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.208 6.208 3 C -0.011 4.011 4 C -0.046 4.046 5 N -0.142 5.142 6 C -0.021 4.021 7 C 0.362 3.638 8 O -0.383 6.383 9 N -0.348 5.348 10 C 0.009 3.991 11 C -0.004 4.004 12 H 0.075 0.925 13 C 0.026 3.974 14 N -0.318 5.318 15 C -0.385 4.385 16 H 0.087 0.913 17 C -0.197 4.197 18 N -0.545 5.545 19 Si 0.734 3.266 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.216 1.216 23 C -0.018 4.018 24 C -0.027 4.027 25 O -0.309 6.309 26 N -0.171 5.171 27 C -0.103 4.103 28 H 0.127 0.873 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.201 0.799 32 H 0.249 0.751 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.115 0.885 36 H 0.051 0.949 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.045 0.955 40 H 0.062 0.938 41 H 0.100 0.900 42 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -9.169 -22.513 -1.936 24.385 hybrid contribution -1.345 -0.002 0.888 1.612 sum -10.514 -22.515 -1.049 24.871 Atomic orbital electron populations 1.23269 0.77244 1.05098 1.02053 1.86091 1.22279 1.24900 1.87573 1.21240 0.95269 0.86886 0.97719 1.22917 0.89257 0.96351 0.96108 1.68293 1.39764 0.97545 1.08613 1.22855 0.85994 0.94418 0.98850 1.17088 0.86319 0.81855 0.78491 1.90827 1.12626 1.86179 1.48627 1.45768 1.11269 1.04985 1.72772 1.21543 0.94947 0.79146 1.03507 1.23151 0.92294 0.97013 0.87961 0.92465 1.21316 0.90232 0.82929 1.02963 1.44055 1.34988 1.22542 1.30240 1.19221 0.93723 1.06503 1.19047 0.91307 1.25064 0.95118 0.98822 1.00654 1.70028 0.96799 1.47698 1.39994 0.86196 0.77581 0.80171 0.82653 1.20255 1.21422 1.21615 1.21607 0.93925 0.94447 0.91782 1.22999 0.88912 0.90522 1.00307 1.87782 1.44436 1.55095 1.43549 1.68163 1.10289 1.29027 1.09580 1.23463 1.01379 0.86608 0.98884 0.87273 0.91909 0.91886 0.79890 0.75132 0.89505 0.90262 0.88505 0.94945 0.93419 0.91989 0.95536 0.93843 0.90030 0.80559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.05 9.84 101.05 0.99 1.04 16 2 O -0.30 -1.92 10.51 -18.89 -0.20 -2.12 16 3 C 0.04 0.33 6.75 -38.68 -0.26 0.07 16 4 C 0.12 1.20 11.28 -17.05 -0.19 1.01 16 5 N -0.43 -5.89 10.11 -11.03 -0.11 -6.00 16 6 C 0.25 3.58 7.59 -157.05 -1.19 2.39 16 7 C 0.58 9.81 7.84 -12.13 -0.10 9.72 16 8 O -0.51 -10.21 16.86 5.36 0.09 -10.12 16 9 N -0.70 -10.99 5.44 -61.11 -0.33 -11.32 16 10 C 0.13 2.30 5.37 -4.04 -0.02 2.28 16 11 C 0.06 1.05 2.86 -26.58 -0.08 0.98 16 12 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 13 C 0.15 3.58 4.73 -3.53 -0.02 3.56 16 14 N -0.59 -14.77 3.05 -171.83 -0.52 -15.30 16 15 C -0.26 -6.90 9.65 -15.06 -0.15 -7.04 16 16 H 0.07 1.81 7.88 -52.49 -0.41 1.40 16 17 C 0.00 0.06 4.95 -17.43 -0.09 -0.02 16 18 N -0.90 -25.83 11.14 55.49 0.62 -25.21 16 19 Si 0.90 21.38 29.59 -169.99 -5.03 16.35 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 C 0.11 2.25 6.74 -3.53 -0.02 2.23 16 24 C 0.05 0.88 6.98 37.31 0.26 1.14 16 25 O -0.39 -7.29 10.14 -35.23 -0.36 -7.65 16 26 N -0.45 -5.47 9.55 -11.03 -0.11 -5.57 16 27 C 0.06 0.56 10.31 -17.05 -0.18 0.38 16 28 H 0.11 0.11 8.14 -51.93 -0.42 -0.32 16 29 H 0.06 0.12 7.71 -51.93 -0.40 -0.28 16 30 H 0.06 0.12 7.71 -51.93 -0.40 -0.28 16 31 H 0.18 1.20 8.06 -52.49 -0.42 0.78 16 32 H 0.41 5.99 7.65 -40.82 -0.31 5.68 16 33 H 0.09 1.51 8.14 -51.93 -0.42 1.08 16 34 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 35 H 0.10 2.50 6.14 -51.93 -0.32 2.18 16 36 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 38 H 0.06 1.21 7.96 -51.93 -0.41 0.80 16 39 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.18 0.87 6.47 -52.49 -0.34 0.53 16 LS Contribution 355.60 15.07 5.36 5.36 Total: -1.00 -33.99 355.60 -7.16 -41.15 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -5.54 Total: 2.69 kcal Atomic # 6 Polarization: 18.77 SS G_CDS: -1.03 Total: 17.74 kcal Atomic # 7 Polarization: -62.95 SS G_CDS: -0.45 Total: -63.40 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -0.47 Total: -19.89 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.35 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.99 -7.16 -41.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035439414.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.837 kcal (2) G-P(sol) polarization free energy of solvation -33.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds