Wall clock time and date at job start Fri Apr 10 2020 18:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35727 * 117.00066 * 2 1 4 4 C 1.39455 * 120.80772 * 180.02562 * 3 2 1 5 5 N 1.31955 * 119.08041 * 179.97438 * 4 3 2 6 6 C 1.32537 * 120.83848 * 359.97438 * 5 4 3 7 7 C 1.48291 * 119.10804 * 180.02562 * 6 5 4 8 8 O 1.21502 * 120.00213 * 359.97438 * 7 6 5 9 9 N 1.34778 * 119.99946 * 180.02562 * 7 6 5 10 10 C 1.46502 * 120.00416 * 180.02562 * 9 7 6 11 11 C 1.52995 * 109.47108 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.51341 * 59.99757 * 11 10 9 13 13 C 1.53298 * 109.50955 * 180.09946 * 11 10 9 14 14 N 1.47154 * 108.38175 * 172.22802 * 13 11 10 15 15 C 1.36938 * 120.98248 * 129.49236 * 14 13 11 16 16 H 1.08001 * 119.99820 * 206.21798 * 15 14 13 17 17 C 1.38806 * 120.00344 * 26.20638 * 15 14 13 18 18 N 1.31624 * 119.99835 * 16.92973 * 17 15 14 19 19 Si 1.86798 * 120.00239 * 196.92290 * 17 15 14 20 20 H 1.48491 * 109.47187 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47228 * 120.00525 * 19 17 15 22 22 H 1.48505 * 109.47282 * 240.00102 * 19 17 15 23 23 C 1.47148 * 118.03567 * 309.45821 * 14 13 11 24 24 C 1.53299 * 108.38254 * 50.53930 * 23 14 13 25 25 O 1.42951 * 109.26728 * 307.72393 * 24 23 14 26 26 N 1.32535 * 121.77655 * 0.02562 * 6 5 4 27 27 C 1.31951 * 120.84003 * 359.97438 * 26 6 5 28 28 H 1.09001 * 109.47326 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47017 * 299.99789 * 1 2 3 30 30 H 1.08991 * 109.47187 * 59.99936 * 1 2 3 31 31 H 1.07994 * 120.45659 * 0.24893 * 4 3 2 32 32 H 0.97007 * 119.99846 * 359.97438 * 9 7 6 33 33 H 1.08999 * 109.46561 * 299.99360 * 10 9 7 34 34 H 1.08998 * 109.47246 * 59.98927 * 10 9 7 35 35 H 1.09005 * 109.68169 * 291.94547 * 13 11 10 36 36 H 1.08993 * 109.68180 * 52.46625 * 13 11 10 37 37 H 0.97006 * 120.00090 * 179.97438 * 18 17 15 38 38 H 1.08998 * 109.68164 * 170.26347 * 23 14 13 39 39 H 1.09003 * 109.68696 * 290.78113 * 23 14 13 40 40 H 1.09000 * 109.51104 * 67.62146 * 24 23 14 41 41 H 1.08997 * 109.51112 * 187.77062 * 24 23 14 42 42 H 1.07999 * 120.46023 * 179.97438 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 3.4367 1.3019 -0.0005 5 7 4.0000 2.4952 -0.0010 6 6 3.2610 3.5954 -0.0015 7 6 3.9344 4.9166 -0.0027 8 8 5.1477 4.9802 -0.0026 9 7 3.2004 6.0470 -0.0027 10 6 3.8655 7.3524 -0.0044 11 6 2.8117 8.4616 -0.0046 12 1 2.1891 8.3726 0.8856 13 6 3.5067 9.8280 -0.0089 14 7 2.4835 10.8685 -0.1979 15 6 2.4151 11.9502 0.6389 16 1 1.4756 12.4629 0.7830 17 6 3.5533 12.3877 1.3023 18 7 4.7429 12.0000 0.8938 19 14 3.3966 13.5267 2.7745 20 1 1.9618 13.8114 3.0296 21 1 3.9917 12.8759 3.9694 22 1 4.1120 14.7977 2.4954 23 6 1.5364 10.7126 -1.3133 24 6 0.9374 9.3031 -1.2455 25 8 1.9951 8.3442 -1.1721 26 7 1.9366 3.5466 -0.0011 27 6 1.3024 2.3895 -0.0006 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 4.0447 0.4094 -0.0050 32 1 2.2316 5.9963 -0.0023 33 1 4.4891 7.4434 0.8849 34 1 4.4874 7.4421 -0.8950 35 1 4.0170 9.9833 0.9418 36 1 4.2288 9.8700 -0.8242 37 1 5.5384 12.3060 1.3571 38 1 0.7419 11.4537 -1.2265 39 1 2.0596 10.8446 -2.2604 40 1 0.3073 9.2175 -0.3602 41 1 0.3397 9.1183 -2.1380 42 1 0.2229 2.3568 0.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035439414.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:18 Heat of formation + Delta-G solvation = -56.002276 kcal Electronic energy + Delta-G solvation = -26690.133361 eV Core-core repulsion = 22671.362894 eV Total energy + Delta-G solvation = -4018.770467 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.57734 -40.82884 -40.02596 -39.38056 -36.51673 -35.99414 -35.02134 -33.26521 -32.89356 -32.02426 -29.24211 -28.73550 -27.43737 -25.95681 -25.27635 -24.92405 -23.31515 -22.18163 -21.41765 -19.65923 -19.28847 -19.17962 -18.83385 -17.56160 -17.27100 -17.14387 -16.81632 -16.57443 -16.33043 -16.05659 -15.64013 -15.52272 -15.29888 -15.08040 -15.02784 -14.68962 -14.56557 -14.41421 -13.74626 -13.45985 -13.17926 -13.01141 -12.70044 -12.55659 -12.50803 -12.45217 -12.23527 -12.17342 -12.06074 -11.88342 -11.42513 -11.25254 -10.79926 -10.54986 -10.48006 -10.29117 -9.84076 -8.75178 -7.90785 -5.38219 -0.69086 -0.13900 1.45953 1.46954 1.48317 1.58742 1.61268 1.99309 2.47645 2.64359 2.72949 2.81580 3.04116 3.21682 3.28567 3.50274 3.62424 3.85949 4.03277 4.07042 4.26676 4.32533 4.40138 4.45419 4.51962 4.56148 4.59132 4.67630 4.77898 4.80781 4.87485 4.97212 5.08046 5.22484 5.24137 5.53604 5.55636 5.61025 5.97894 6.26304 6.27152 6.33411 6.75287 7.01072 7.05903 7.74806 8.28576 9.15332 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.021679 B = 0.002496 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.274696 B =11216.727762 C =11701.688212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 O -0.300 6.300 3 C 0.067 3.933 4 C 0.111 3.889 5 N -0.458 5.458 6 C 0.218 3.782 7 C 0.581 3.419 8 O -0.554 6.554 9 N -0.685 5.685 10 C 0.141 3.859 11 C 0.077 3.923 12 H 0.066 0.934 13 C 0.159 3.841 14 N -0.614 5.614 15 C -0.264 4.264 16 H 0.075 0.925 17 C -0.052 4.052 18 N -0.936 5.936 19 Si 0.970 3.030 20 H -0.263 1.263 21 H -0.290 1.290 22 H -0.293 1.293 23 C 0.102 3.898 24 C 0.057 3.943 25 O -0.390 6.390 26 N -0.459 5.459 27 C 0.064 3.936 28 H 0.130 0.870 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.210 0.790 32 H 0.421 0.579 33 H 0.083 0.917 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.002 0.998 37 H 0.251 0.749 38 H 0.073 0.927 39 H 0.016 0.984 40 H 0.055 0.945 41 H 0.121 0.879 42 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.162 -25.381 -1.664 29.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.209 6.209 3 C 0.014 3.986 4 C -0.058 4.058 5 N -0.174 5.174 6 C -0.050 4.050 7 C 0.364 3.636 8 O -0.430 6.430 9 N -0.337 5.337 10 C 0.017 3.983 11 C 0.018 3.982 12 H 0.084 0.916 13 C 0.032 3.968 14 N -0.339 5.339 15 C -0.393 4.393 16 H 0.093 0.907 17 C -0.247 4.247 18 N -0.582 5.582 19 Si 0.798 3.202 20 H -0.187 1.187 21 H -0.216 1.216 22 H -0.221 1.221 23 C -0.024 4.024 24 C -0.020 4.020 25 O -0.310 6.310 26 N -0.176 5.176 27 C -0.104 4.104 28 H 0.148 0.852 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.226 0.774 32 H 0.259 0.741 33 H 0.101 0.899 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.020 0.980 37 H 0.061 0.939 38 H 0.092 0.908 39 H 0.034 0.966 40 H 0.073 0.927 41 H 0.139 0.861 42 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -12.609 -24.676 -1.749 27.767 hybrid contribution -0.471 0.487 0.745 1.007 sum -13.080 -24.190 -1.005 27.518 Atomic orbital electron populations 1.23683 0.74845 1.07058 1.03415 1.86121 1.24637 1.23654 1.86466 1.21187 0.94836 0.87625 0.94921 1.23341 0.90654 0.95814 0.95974 1.68178 1.41030 0.98580 1.09583 1.22144 0.86950 0.93257 1.02660 1.17488 0.85937 0.82976 0.77208 1.90786 1.14483 1.87043 1.50661 1.45562 1.11504 1.04148 1.72530 1.21266 0.94372 0.79863 1.02770 1.22749 0.92201 0.94666 0.88615 0.91609 1.21087 0.90058 0.85398 1.00213 1.44357 1.35627 1.22482 1.31408 1.19582 0.93861 1.06776 1.19125 0.90736 1.25853 0.94840 1.00792 1.03256 1.70190 0.97365 1.49364 1.41253 0.85168 0.78020 0.77852 0.79161 1.18728 1.21642 1.22062 1.21833 0.93359 0.97301 0.89865 1.23091 0.88430 0.87756 1.02771 1.87799 1.44715 1.55273 1.43170 1.68105 1.09077 1.30737 1.09718 1.24105 1.03009 0.85604 0.97668 0.85225 0.90498 0.90482 0.77351 0.74134 0.89887 0.91619 0.91312 0.97986 0.93939 0.90825 0.96649 0.92689 0.86095 0.76621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.00 9.84 113.37 1.12 1.12 16 2 O -0.30 -2.75 10.51 -90.50 -0.95 -3.70 16 3 C 0.07 0.92 6.75 22.85 0.15 1.07 16 4 C 0.11 2.00 11.28 84.97 0.96 2.95 16 5 N -0.46 -12.61 10.11 -188.82 -1.91 -14.52 16 6 C 0.22 6.29 7.59 137.56 1.04 7.33 16 7 C 0.58 20.21 7.84 86.92 0.68 20.89 16 8 O -0.55 -23.33 16.86 -3.72 -0.06 -23.39 16 9 N -0.69 -21.87 5.44 -465.54 -2.53 -24.40 16 10 C 0.14 5.10 5.37 86.38 0.46 5.56 16 11 C 0.08 2.96 2.86 30.69 0.09 3.05 16 12 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 13 C 0.16 7.76 4.73 86.35 0.41 8.17 16 14 N -0.61 -30.82 3.05 -697.54 -2.13 -32.95 16 15 C -0.26 -14.30 9.65 84.03 0.81 -13.48 16 16 H 0.07 3.87 7.88 -2.91 -0.02 3.85 16 17 C -0.05 -2.88 4.95 84.86 0.42 -2.46 16 18 N -0.94 -55.55 11.14 21.65 0.24 -55.31 16 19 Si 0.97 44.47 29.59 68.60 2.03 46.50 16 20 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 21 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 22 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 23 C 0.10 4.12 6.74 86.36 0.58 4.70 16 24 C 0.06 1.84 6.98 72.08 0.50 2.34 16 25 O -0.39 -14.09 10.14 -148.98 -1.51 -15.60 16 26 N -0.46 -10.34 9.55 -188.82 -1.80 -12.14 16 27 C 0.06 0.91 10.31 84.97 0.88 1.78 16 28 H 0.13 -0.31 8.14 -2.39 -0.02 -0.33 16 29 H 0.08 -0.07 7.71 -2.39 -0.02 -0.09 16 30 H 0.08 -0.07 7.71 -2.39 -0.02 -0.09 16 31 H 0.21 2.36 8.06 -2.91 -0.02 2.34 16 32 H 0.42 11.89 7.65 -92.70 -0.71 11.18 16 33 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16 34 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 35 H 0.07 3.73 6.14 -2.38 -0.01 3.71 16 36 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 37 H 0.25 14.46 8.31 -92.70 -0.77 13.69 16 38 H 0.07 2.77 7.96 -2.39 -0.02 2.75 16 39 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.12 3.01 8.14 -2.39 -0.02 2.99 16 42 H 0.22 1.12 6.47 -2.91 -0.02 1.10 16 Total: -1.00 -76.87 355.60 -0.17 -77.04 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: 0.35 Total: 15.45 kcal Atomic # 6 Polarization: 34.92 SS G_CDS: 8.10 Total: 43.02 kcal Atomic # 7 Polarization: -131.19 SS G_CDS: -8.13 Total: -139.32 kcal Atomic # 8 Polarization: -40.17 SS G_CDS: -2.52 Total: -42.70 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -76.87 -0.17 -77.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035439414.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.041 kcal (2) G-P(sol) polarization free energy of solvation -76.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds