Wall clock time and date at job start Fri Apr 10 2020 18:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28718 * 125.32132 * 2 1 4 4 N 1.28976 * 108.99019 * 180.02562 * 3 2 1 5 5 C 1.34188 * 107.25204 * 0.02562 * 4 3 2 6 6 C 1.47998 * 126.69976 * 179.97438 * 5 4 3 7 7 O 1.21537 * 120.00484 * 186.97528 * 6 5 4 8 8 N 1.34781 * 120.00254 * 6.97392 * 6 5 4 9 9 C 1.46979 * 120.71799 * 354.72885 * 8 6 5 10 10 C 1.53158 * 108.45252 * 125.43597 * 9 8 6 11 11 C 1.52510 * 109.79440 * 54.51266 * 10 9 8 12 12 H 1.09005 * 108.93044 * 180.34612 * 11 10 9 13 13 O 1.42690 * 110.62867 * 61.30736 * 11 10 9 14 14 C 1.43071 * 113.86632 * 174.63974 * 13 11 10 15 15 C 1.52808 * 109.52300 * 61.51570 * 14 13 11 16 16 N 1.47169 * 108.92374 * 308.65396 * 15 14 13 17 17 C 1.36937 * 121.22437 * 230.90729 * 16 15 14 18 18 H 1.08006 * 119.99861 * 155.95733 * 17 16 15 19 19 C 1.38807 * 119.99854 * 335.95452 * 17 16 15 20 20 N 1.31626 * 119.99897 * 142.01973 * 19 17 16 21 21 Si 1.86797 * 120.00399 * 322.02126 * 19 17 16 22 22 H 1.48507 * 109.47199 * 269.99982 * 21 19 17 23 23 H 1.48502 * 109.47013 * 29.99539 * 21 19 17 24 24 H 1.48497 * 109.47432 * 149.99978 * 21 19 17 25 25 C 1.47596 * 117.55067 * 50.63340 * 16 15 14 26 26 H 1.09004 * 110.31147 * 186.93325 * 25 16 15 27 27 C 1.46791 * 120.72537 * 174.69677 * 8 6 5 28 28 N 1.28869 * 125.32050 * 180.30594 * 2 1 3 29 29 H 1.08997 * 109.47193 * 89.97517 * 1 2 3 30 30 H 1.08997 * 109.47506 * 209.97560 * 1 2 3 31 31 H 1.08999 * 109.47494 * 329.97654 * 1 2 3 32 32 H 1.09002 * 109.63994 * 245.12063 * 9 8 6 33 33 H 1.09002 * 109.64123 * 5.74520 * 9 8 6 34 34 H 1.09000 * 109.41932 * 174.61613 * 10 9 8 35 35 H 1.09001 * 109.41397 * 294.41429 * 10 9 8 36 36 H 1.09009 * 109.47164 * 181.63865 * 14 13 11 37 37 H 1.08997 * 109.47530 * 301.65123 * 14 13 11 38 38 H 1.09000 * 109.53447 * 188.78934 * 15 14 13 39 39 H 1.08999 * 109.44259 * 68.45939 * 15 14 13 40 40 H 0.96998 * 119.99784 * 354.90594 * 20 19 17 41 41 H 1.09001 * 109.52560 * 114.41679 * 27 8 6 42 42 H 1.09008 * 109.57492 * 354.26406 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2092 1.0502 0.0000 4 7 3.4469 0.6876 -0.0005 5 6 3.4685 -0.6541 -0.0015 6 6 4.6692 -1.5194 -0.0029 7 8 4.5514 -2.7222 -0.1314 8 7 5.8934 -0.9736 0.1384 9 6 6.0647 0.4856 0.1794 10 6 6.8251 0.8487 1.4583 11 6 8.1302 0.0623 1.5240 12 1 8.6564 0.3265 2.4413 13 8 8.9683 0.3856 0.4153 14 6 10.2624 -0.2219 0.4715 15 6 10.1137 -1.7426 0.4581 16 7 9.1534 -2.1374 1.5011 17 6 9.4593 -3.1086 2.4168 18 1 8.9565 -3.1273 3.3725 19 6 10.4156 -4.0689 2.1167 20 7 11.2423 -4.4889 3.0509 21 14 10.5293 -4.7654 0.3872 22 1 9.6540 -5.9599 0.2760 23 1 10.0900 -3.7373 -0.5903 24 1 11.9340 -5.1526 0.1007 25 6 7.8509 -1.4438 1.5277 26 1 7.2843 -1.7365 2.4118 27 6 7.0845 -1.8235 0.2553 28 7 2.2100 -1.0515 -0.0056 29 1 -0.3633 0.0004 -1.0276 30 1 -0.3634 -0.8902 0.5134 31 1 -0.3634 0.8897 0.5142 32 1 6.6343 0.8122 -0.6907 33 1 5.0878 0.9692 0.1841 34 1 7.0449 1.9163 1.4585 35 1 6.2116 0.6058 2.3259 36 1 10.8501 0.0947 -0.3904 37 1 10.7677 0.0833 1.3878 38 1 11.0804 -2.2051 0.6571 39 1 9.7466 -2.0627 -0.5170 40 1 11.2330 -4.0755 3.9283 41 1 7.7252 -1.6745 -0.6139 42 1 6.7828 -2.8696 0.3102 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074311813.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:42 Heat of formation + Delta-G solvation = 116.266640 kcal Electronic energy + Delta-G solvation = -28580.876763 eV Core-core repulsion = 24601.869188 eV Total energy + Delta-G solvation = -3979.007575 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.154 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.67844 -40.22835 -38.72417 -36.08715 -35.44673 -34.80770 -33.41611 -31.95183 -31.81893 -30.14445 -29.12208 -27.56252 -26.00382 -24.26496 -23.86112 -23.04341 -22.91215 -21.50784 -20.38278 -18.76030 -17.93148 -17.87578 -17.45242 -16.92260 -16.17144 -15.72952 -15.48011 -15.46193 -14.60512 -14.43767 -14.26116 -14.15452 -13.82098 -13.66424 -13.59060 -13.51068 -12.85482 -12.61809 -12.45588 -12.36843 -12.16691 -11.77114 -11.43227 -11.38083 -11.25130 -10.88206 -10.80405 -10.62911 -10.41329 -10.37697 -10.07075 -9.77340 -9.69836 -9.37440 -9.20138 -8.54488 -8.21161 -7.08979 -6.44952 -3.29542 0.75826 1.24491 1.46795 2.70853 3.08871 3.48578 3.58794 3.69316 3.75751 3.81663 4.21097 4.38151 4.50262 4.60524 4.68966 4.73873 4.85182 5.13478 5.15032 5.21783 5.35826 5.49048 5.55764 5.66686 5.66856 5.81466 5.86425 5.93192 6.03018 6.08342 6.16219 6.23382 6.32684 6.42975 6.54002 6.58200 6.76815 6.78429 7.41908 7.70663 7.84516 7.90615 8.12743 8.34562 8.93063 9.52564 10.12363 10.96377 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.020754 B = 0.003826 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.794728 B = 7316.206645 C = 8072.302012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.135 5.135 3 N -0.060 5.060 4 N -0.255 5.255 5 C 0.145 3.855 6 C 0.606 3.394 7 O -0.511 6.511 8 N -0.579 5.579 9 C 0.074 3.926 10 C -0.119 4.119 11 C 0.080 3.920 12 H 0.055 0.945 13 O -0.383 6.383 14 C 0.045 3.955 15 C 0.105 3.895 16 N -0.590 5.590 17 C -0.365 4.365 18 H 0.069 0.931 19 C 0.009 3.991 20 N -0.891 5.891 21 Si 1.008 2.992 22 H -0.295 1.295 23 H -0.268 1.268 24 H -0.293 1.293 25 C 0.134 3.866 26 H 0.081 0.919 27 C 0.101 3.899 28 N -0.249 5.249 29 H 0.105 0.895 30 H 0.114 0.886 31 H 0.116 0.884 32 H 0.078 0.922 33 H 0.134 0.866 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.047 0.953 38 H 0.076 0.924 39 H 0.040 0.960 40 H 0.269 0.731 41 H 0.074 0.926 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.219 14.086 -6.322 23.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.048 5.048 3 N -0.053 5.053 4 N -0.129 5.129 5 C -0.139 4.139 6 C 0.387 3.613 7 O -0.384 6.384 8 N -0.312 5.312 9 C -0.049 4.049 10 C -0.158 4.158 11 C 0.021 3.979 12 H 0.073 0.927 13 O -0.302 6.302 14 C -0.033 4.033 15 C -0.020 4.020 16 N -0.314 5.314 17 C -0.492 4.492 18 H 0.087 0.913 19 C -0.196 4.196 20 N -0.527 5.527 21 Si 0.837 3.163 22 H -0.223 1.223 23 H -0.194 1.194 24 H -0.219 1.219 25 C 0.026 3.974 26 H 0.099 0.901 27 C -0.022 4.022 28 N -0.103 5.103 29 H 0.124 0.876 30 H 0.133 0.867 31 H 0.134 0.866 32 H 0.096 0.904 33 H 0.150 0.850 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.104 0.896 37 H 0.066 0.934 38 H 0.094 0.906 39 H 0.058 0.942 40 H 0.078 0.922 41 H 0.093 0.907 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -17.906 12.896 -7.413 23.278 hybrid contribution -0.511 0.421 1.121 1.302 sum -18.417 13.317 -6.292 23.582 Atomic orbital electron populations 1.22553 0.68520 1.07254 1.06413 1.50225 1.11090 1.00717 1.42760 1.78936 0.96832 1.14358 1.15140 1.75737 1.09058 1.10234 1.17849 1.25494 0.93219 0.90011 1.05152 1.16260 0.80595 0.85572 0.78901 1.90859 1.84961 1.13237 1.49302 1.48031 1.05279 1.08556 1.69304 1.22730 1.04553 0.79020 0.98598 1.21759 0.95000 1.00592 0.98400 1.22257 0.90995 0.95081 0.89595 0.92711 1.87746 1.25688 1.71320 1.45451 1.23082 0.84138 0.95052 1.01005 1.21995 0.94854 0.92801 0.92389 1.44618 1.08942 1.42623 1.35174 1.20023 1.25444 1.08725 0.94976 0.91325 1.26044 0.93593 0.95150 1.04853 1.70899 1.30193 1.45691 1.05935 0.84795 0.75947 0.77654 0.77911 1.22266 1.19362 1.21906 1.21673 0.88086 0.91506 0.96151 0.90097 1.22562 0.83674 0.95397 1.00607 1.75128 1.02435 1.14160 1.18570 0.87649 0.86731 0.86569 0.90376 0.84981 0.90063 0.90603 0.89642 0.93440 0.90625 0.94190 0.92154 0.90737 0.88927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.29 11.62 59.85 0.70 0.98 16 2 N -0.13 -1.32 4.39 -16.65 -0.07 -1.39 16 3 N -0.06 -0.68 13.23 60.35 0.80 0.12 16 4 N -0.25 -3.41 8.91 32.09 0.29 -3.12 16 5 C 0.15 2.19 7.89 -156.25 -1.23 0.96 16 6 C 0.61 10.66 7.71 -12.26 -0.09 10.57 16 7 O -0.51 -10.63 16.54 5.33 0.09 -10.54 16 8 N -0.58 -9.74 2.96 -173.83 -0.51 -10.25 16 9 C 0.07 1.05 6.17 -3.70 -0.02 1.02 16 10 C -0.12 -1.65 5.82 -26.90 -0.16 -1.80 16 11 C 0.08 1.38 2.73 -26.89 -0.07 1.31 16 12 H 0.05 1.00 8.11 -51.93 -0.42 0.57 16 13 O -0.38 -6.76 9.59 -35.23 -0.34 -7.09 16 14 C 0.05 0.80 6.96 37.06 0.26 1.06 16 15 C 0.11 2.23 4.01 -3.78 -0.02 2.21 16 16 N -0.59 -13.79 2.48 -164.13 -0.41 -14.20 16 17 C -0.36 -9.97 9.81 -15.06 -0.15 -10.12 16 18 H 0.07 2.02 8.06 -52.48 -0.42 1.59 16 19 C 0.01 0.24 4.82 -17.43 -0.08 0.16 16 20 N -0.89 -26.78 13.70 55.49 0.76 -26.02 16 21 Si 1.01 24.93 26.97 -169.99 -4.58 20.34 16 22 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 23 H -0.27 -6.04 4.66 56.52 0.26 -5.78 16 24 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 25 C 0.13 2.70 3.03 -67.07 -0.20 2.50 16 26 H 0.08 1.71 7.99 -51.93 -0.42 1.29 16 27 C 0.10 1.95 5.61 -3.72 -0.02 1.93 16 28 N -0.25 -3.38 12.17 32.11 0.39 -2.99 16 29 H 0.11 0.13 8.14 -51.93 -0.42 -0.30 16 30 H 0.11 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.12 0.08 8.14 -51.93 -0.42 -0.34 16 32 H 0.08 1.10 7.95 -51.93 -0.41 0.69 16 33 H 0.13 1.76 3.69 -114.50 -0.42 1.33 16 34 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.09 1.28 8.14 -51.92 -0.42 0.86 16 37 H 0.05 0.86 8.13 -51.93 -0.42 0.44 16 38 H 0.08 1.70 5.78 -51.93 -0.30 1.40 16 39 H 0.04 0.85 5.58 -51.93 -0.29 0.56 16 40 H 0.27 7.99 8.73 -40.82 -0.36 7.63 16 41 H 0.07 1.47 6.58 -51.93 -0.34 1.12 16 42 H 0.09 2.00 7.03 -51.92 -0.37 1.63 16 LS Contribution 332.48 15.07 5.01 5.01 Total: -1.00 -34.32 332.48 -5.32 -39.64 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -5.64 Total: -0.28 kcal Atomic # 6 Polarization: 11.87 SS G_CDS: -1.10 Total: 10.78 kcal Atomic # 7 Polarization: -59.09 SS G_CDS: 1.24 Total: -57.85 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: -0.25 Total: -17.64 kcal Atomic # 14 Polarization: 24.93 SS G_CDS: -4.58 Total: 20.34 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.32 -5.32 -39.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074311813.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.911 kcal (2) G-P(sol) polarization free energy of solvation -34.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds