Wall clock time and date at job start Fri Apr 10 2020 18:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28718 * 125.32132 * 2 1 4 4 N 1.28976 * 108.99019 * 180.02562 * 3 2 1 5 5 C 1.34188 * 107.25204 * 0.02562 * 4 3 2 6 6 C 1.47998 * 126.69976 * 179.97438 * 5 4 3 7 7 O 1.21537 * 120.00484 * 186.97528 * 6 5 4 8 8 N 1.34781 * 120.00254 * 6.97392 * 6 5 4 9 9 C 1.46979 * 120.71799 * 354.72885 * 8 6 5 10 10 C 1.53158 * 108.45252 * 125.43597 * 9 8 6 11 11 C 1.52510 * 109.79440 * 54.51266 * 10 9 8 12 12 H 1.09005 * 108.93044 * 180.34612 * 11 10 9 13 13 O 1.42690 * 110.62867 * 61.30736 * 11 10 9 14 14 C 1.43071 * 113.86632 * 174.63974 * 13 11 10 15 15 C 1.52808 * 109.52300 * 61.51570 * 14 13 11 16 16 N 1.47169 * 108.92374 * 308.65396 * 15 14 13 17 17 C 1.36937 * 121.22437 * 230.90729 * 16 15 14 18 18 H 1.08006 * 119.99861 * 155.95733 * 17 16 15 19 19 C 1.38807 * 119.99854 * 335.95452 * 17 16 15 20 20 N 1.31626 * 119.99897 * 142.01973 * 19 17 16 21 21 Si 1.86797 * 120.00399 * 322.02126 * 19 17 16 22 22 H 1.48507 * 109.47199 * 269.99982 * 21 19 17 23 23 H 1.48502 * 109.47013 * 29.99539 * 21 19 17 24 24 H 1.48497 * 109.47432 * 149.99978 * 21 19 17 25 25 C 1.47596 * 117.55067 * 50.63340 * 16 15 14 26 26 H 1.09004 * 110.31147 * 186.93325 * 25 16 15 27 27 C 1.46791 * 120.72537 * 174.69677 * 8 6 5 28 28 N 1.28869 * 125.32050 * 180.30594 * 2 1 3 29 29 H 1.08997 * 109.47193 * 89.97517 * 1 2 3 30 30 H 1.08997 * 109.47506 * 209.97560 * 1 2 3 31 31 H 1.08999 * 109.47494 * 329.97654 * 1 2 3 32 32 H 1.09002 * 109.63994 * 245.12063 * 9 8 6 33 33 H 1.09002 * 109.64123 * 5.74520 * 9 8 6 34 34 H 1.09000 * 109.41932 * 174.61613 * 10 9 8 35 35 H 1.09001 * 109.41397 * 294.41429 * 10 9 8 36 36 H 1.09009 * 109.47164 * 181.63865 * 14 13 11 37 37 H 1.08997 * 109.47530 * 301.65123 * 14 13 11 38 38 H 1.09000 * 109.53447 * 188.78934 * 15 14 13 39 39 H 1.08999 * 109.44259 * 68.45939 * 15 14 13 40 40 H 0.96998 * 119.99784 * 354.90594 * 20 19 17 41 41 H 1.09001 * 109.52560 * 114.41679 * 27 8 6 42 42 H 1.09008 * 109.57492 * 354.26406 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2092 1.0502 0.0000 4 7 3.4469 0.6876 -0.0005 5 6 3.4685 -0.6541 -0.0015 6 6 4.6692 -1.5194 -0.0029 7 8 4.5514 -2.7222 -0.1314 8 7 5.8934 -0.9736 0.1384 9 6 6.0647 0.4856 0.1794 10 6 6.8251 0.8487 1.4583 11 6 8.1302 0.0623 1.5240 12 1 8.6564 0.3265 2.4413 13 8 8.9683 0.3856 0.4153 14 6 10.2624 -0.2219 0.4715 15 6 10.1137 -1.7426 0.4581 16 7 9.1534 -2.1374 1.5011 17 6 9.4593 -3.1086 2.4168 18 1 8.9565 -3.1273 3.3725 19 6 10.4156 -4.0689 2.1167 20 7 11.2423 -4.4889 3.0509 21 14 10.5293 -4.7654 0.3872 22 1 9.6540 -5.9599 0.2760 23 1 10.0900 -3.7373 -0.5903 24 1 11.9340 -5.1526 0.1007 25 6 7.8509 -1.4438 1.5277 26 1 7.2843 -1.7365 2.4118 27 6 7.0845 -1.8235 0.2553 28 7 2.2100 -1.0515 -0.0056 29 1 -0.3633 0.0004 -1.0276 30 1 -0.3634 -0.8902 0.5134 31 1 -0.3634 0.8897 0.5142 32 1 6.6343 0.8122 -0.6907 33 1 5.0878 0.9692 0.1841 34 1 7.0449 1.9163 1.4585 35 1 6.2116 0.6058 2.3259 36 1 10.8501 0.0947 -0.3904 37 1 10.7677 0.0833 1.3878 38 1 11.0804 -2.2051 0.6571 39 1 9.7466 -2.0627 -0.5170 40 1 11.2330 -4.0755 3.9283 41 1 7.7252 -1.6745 -0.6139 42 1 6.7828 -2.8696 0.3102 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074311813.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:41 Heat of formation + Delta-G solvation = 89.658524 kcal Electronic energy + Delta-G solvation = -28582.030577 eV Core-core repulsion = 24601.869188 eV Total energy + Delta-G solvation = -3980.161390 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.154 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -45.61748 -41.65882 -40.19748 -37.45307 -36.58983 -36.31675 -34.40907 -33.85909 -33.28418 -31.52346 -30.00310 -29.13202 -27.29322 -25.57699 -25.24098 -24.61013 -24.01191 -22.97916 -21.76233 -20.23961 -19.50519 -18.96421 -18.76312 -17.93913 -17.54336 -17.28242 -17.06760 -16.85543 -15.93231 -15.88742 -15.68357 -15.50122 -15.37685 -15.03208 -14.44191 -14.27758 -14.22924 -14.04346 -13.94658 -13.84780 -13.49448 -13.04376 -12.88723 -12.58481 -12.47079 -12.43531 -12.29759 -12.19039 -11.78909 -11.70355 -11.55914 -11.51261 -11.16875 -11.04365 -10.94236 -10.31178 -9.93304 -9.03317 -8.65497 -5.46274 -0.21214 0.18138 0.76150 1.46892 1.53157 1.55961 1.72323 1.80089 2.53102 2.58047 2.78653 2.90329 2.97065 3.25493 3.60027 3.78686 3.98853 3.99013 4.07501 4.12639 4.19818 4.24551 4.34518 4.38130 4.39543 4.51784 4.56325 4.60467 4.68162 4.78743 4.87143 4.91656 4.94267 4.98584 5.10143 5.16824 5.23219 5.43514 5.75497 6.08984 6.17575 6.25472 6.65745 6.80621 6.99963 7.47840 8.03498 8.73139 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.020754 B = 0.003826 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.794728 B = 7316.206645 C = 8072.302012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.112 5.112 3 N -0.055 5.055 4 N -0.260 5.260 5 C 0.128 3.872 6 C 0.606 3.394 7 O -0.554 6.554 8 N -0.577 5.577 9 C 0.076 3.924 10 C -0.111 4.111 11 C 0.087 3.913 12 H 0.046 0.954 13 O -0.375 6.375 14 C 0.053 3.947 15 C 0.099 3.901 16 N -0.605 5.605 17 C -0.352 4.352 18 H 0.033 0.967 19 C -0.039 4.039 20 N -0.927 5.927 21 Si 1.051 2.949 22 H -0.303 1.303 23 H -0.234 1.234 24 H -0.292 1.292 25 C 0.132 3.868 26 H 0.060 0.940 27 C 0.115 3.885 28 N -0.264 5.264 29 H 0.131 0.869 30 H 0.129 0.871 31 H 0.146 0.854 32 H 0.086 0.914 33 H 0.148 0.852 34 H 0.112 0.888 35 H 0.081 0.919 36 H 0.124 0.876 37 H 0.042 0.958 38 H 0.060 0.940 39 H 0.047 0.953 40 H 0.256 0.744 41 H 0.076 0.924 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.283 16.997 -8.294 27.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.027 5.027 3 N -0.047 5.047 4 N -0.133 5.133 5 C -0.156 4.156 6 C 0.389 3.611 7 O -0.429 6.429 8 N -0.309 5.309 9 C -0.045 4.045 10 C -0.150 4.150 11 C 0.028 3.972 12 H 0.064 0.936 13 O -0.294 6.294 14 C -0.025 4.025 15 C -0.026 4.026 16 N -0.330 5.330 17 C -0.481 4.481 18 H 0.051 0.949 19 C -0.238 4.238 20 N -0.566 5.566 21 Si 0.877 3.123 22 H -0.232 1.232 23 H -0.158 1.158 24 H -0.218 1.218 25 C 0.025 3.975 26 H 0.079 0.921 27 C -0.009 4.009 28 N -0.119 5.119 29 H 0.149 0.851 30 H 0.148 0.852 31 H 0.164 0.836 32 H 0.104 0.896 33 H 0.165 0.835 34 H 0.131 0.869 35 H 0.100 0.900 36 H 0.142 0.858 37 H 0.061 0.939 38 H 0.079 0.921 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.094 0.906 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -20.005 15.893 -9.405 27.226 hybrid contribution -0.121 -0.404 1.804 1.853 sum -20.126 15.489 -7.601 26.509 Atomic orbital electron populations 1.23300 0.64805 1.09545 1.08814 1.50789 1.12718 0.99359 1.39848 1.78859 0.96305 1.14465 1.15072 1.75603 1.10286 1.09183 1.18263 1.24838 0.92787 0.90381 1.07575 1.16505 0.81402 0.85357 0.77848 1.90827 1.85748 1.15173 1.51161 1.47998 1.04456 1.09494 1.68936 1.22933 1.05605 0.77050 0.98941 1.21782 0.92864 1.01775 0.98551 1.22207 0.92623 0.93012 0.89385 0.93578 1.87771 1.25558 1.70773 1.45321 1.23051 0.84615 0.92245 1.02605 1.22114 0.93473 0.95453 0.91558 1.44644 1.11081 1.42060 1.35192 1.19836 1.24304 1.09481 0.94467 0.94888 1.26990 0.93706 0.95723 1.07377 1.70999 1.32361 1.47269 1.06004 0.84225 0.75728 0.77434 0.74962 1.23177 1.15847 1.21842 1.21742 0.86648 0.93379 0.95770 0.92130 1.22112 0.84592 0.94344 0.99890 1.75087 1.02293 1.15636 1.18860 0.85068 0.85248 0.83568 0.89624 0.83538 0.86938 0.90035 0.85814 0.93920 0.92132 0.93542 0.93520 0.90579 0.91854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.18 11.62 127.77 1.49 1.66 16 2 N -0.11 -1.86 4.39 -206.59 -0.91 -2.77 16 3 N -0.05 -1.08 13.23 37.02 0.49 -0.59 16 4 N -0.26 -6.35 8.91 -52.37 -0.47 -6.81 16 5 C 0.13 3.68 7.89 137.15 1.08 4.76 16 6 C 0.61 21.28 7.71 86.83 0.67 21.95 16 7 O -0.55 -23.59 16.54 -3.83 -0.06 -23.66 16 8 N -0.58 -18.98 2.96 -822.16 -2.43 -21.41 16 9 C 0.08 1.97 6.17 86.34 0.53 2.50 16 10 C -0.11 -2.78 5.82 30.48 0.18 -2.61 16 11 C 0.09 2.87 2.73 30.49 0.08 2.95 16 12 H 0.05 1.62 8.11 -2.38 -0.02 1.60 16 13 O -0.38 -12.15 9.59 -148.98 -1.43 -13.58 16 14 C 0.05 1.74 6.96 71.92 0.50 2.24 16 15 C 0.10 4.06 4.01 86.19 0.35 4.40 16 16 N -0.61 -28.61 2.48 -673.17 -1.67 -30.28 16 17 C -0.35 -20.03 9.81 84.03 0.82 -19.21 16 18 H 0.03 2.07 8.06 -2.91 -0.02 2.05 16 19 C -0.04 -2.25 4.82 84.86 0.41 -1.84 16 20 N -0.93 -57.95 13.70 21.65 0.30 -57.65 16 21 Si 1.05 51.41 26.97 68.60 1.85 53.26 16 22 H -0.30 -15.19 7.11 99.48 0.71 -14.48 16 23 H -0.23 -10.07 4.66 99.48 0.46 -9.60 16 24 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 25 C 0.13 5.36 3.03 44.95 0.14 5.49 16 26 H 0.06 2.66 7.99 -2.38 -0.02 2.64 16 27 C 0.11 4.44 5.61 86.43 0.48 4.92 16 28 N -0.26 -6.71 12.17 -52.32 -0.64 -7.35 16 29 H 0.13 -0.23 8.14 -2.39 -0.02 -0.25 16 30 H 0.13 0.03 8.14 -2.39 -0.02 0.01 16 31 H 0.15 -0.45 8.14 -2.39 -0.02 -0.47 16 32 H 0.09 2.13 7.95 -2.39 -0.02 2.11 16 33 H 0.15 3.49 3.69 -83.29 -0.31 3.18 16 34 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.12 3.19 8.14 -2.38 -0.02 3.18 16 37 H 0.04 1.46 8.13 -2.39 -0.02 1.45 16 38 H 0.06 2.68 5.78 -2.39 -0.01 2.66 16 39 H 0.05 1.86 5.58 -2.39 -0.01 1.85 16 40 H 0.26 16.05 8.73 -92.71 -0.81 15.24 16 41 H 0.08 2.91 6.58 -2.39 -0.02 2.89 16 42 H 0.06 2.82 7.03 -2.38 -0.02 2.80 16 Total: -1.00 -78.32 332.48 2.24 -76.08 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: 0.48 Total: 7.53 kcal Atomic # 6 Polarization: 20.50 SS G_CDS: 6.73 Total: 27.23 kcal Atomic # 7 Polarization: -121.54 SS G_CDS: -5.33 Total: -126.87 kcal Atomic # 8 Polarization: -35.74 SS G_CDS: -1.49 Total: -37.23 kcal Atomic # 14 Polarization: 51.41 SS G_CDS: 1.85 Total: 53.26 kcal Total: -78.32 2.24 -76.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074311813.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.738 kcal (2) G-P(sol) polarization free energy of solvation -78.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds