Wall clock time and date at job start Fri Apr 10 2020 18:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 119.99930 * 2 1 4 4 H 1.48503 * 109.46833 * 275.00140 * 3 2 1 5 5 H 1.48495 * 109.47351 * 35.00209 * 3 2 1 6 6 H 1.48498 * 109.46944 * 155.00158 * 3 2 1 7 7 C 1.38806 * 120.00044 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00256 * 174.87548 * 7 2 1 9 9 N 1.36946 * 120.00337 * 354.87419 * 7 2 1 10 10 C 1.46693 * 125.32557 * 184.99916 * 9 7 2 11 11 C 1.54046 * 106.82928 * 161.79831 * 10 9 7 12 12 H 1.09000 * 113.43755 * 262.67508 * 11 10 9 13 13 C 1.55126 * 108.25751 * 135.80487 * 11 10 9 14 14 C 1.54848 * 101.78029 * 285.18786 * 13 11 10 15 15 N 1.47398 * 104.81025 * 322.81341 * 14 13 11 16 16 C 1.34777 * 125.59020 * 204.60441 * 15 14 13 17 17 O 1.21602 * 119.99794 * 3.14390 * 16 15 14 18 18 C 1.47430 * 120.00230 * 183.13975 * 16 15 14 19 19 C 1.41297 * 126.41058 * 352.79194 * 18 16 15 20 20 N 1.30445 * 108.01810 * 180.02562 * 19 18 16 21 21 N 1.39929 * 108.90161 * 0.02562 * 20 19 18 22 22 C 1.46508 * 125.75773 * 179.97438 * 21 20 19 23 23 C 1.53003 * 109.46858 * 305.02100 * 22 21 20 24 24 F 1.39893 * 109.46911 * 180.02562 * 23 22 21 25 25 C 1.34261 * 108.49083 * 359.97438 * 21 20 19 26 26 C 1.46733 * 108.82160 * 24.87518 * 15 14 13 27 27 H 1.09003 * 111.32438 * 235.85954 * 26 15 14 28 28 C 1.46632 * 125.31579 * 4.97930 * 9 7 2 29 29 H 0.96997 * 120.00313 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.99222 * 42.45892 * 10 9 7 31 31 H 1.08995 * 109.99356 * 281.14543 * 10 9 7 32 32 H 1.09005 * 110.96613 * 167.05973 * 13 11 10 33 33 H 1.09002 * 110.99695 * 43.32969 * 13 11 10 34 34 H 1.09006 * 110.37183 * 203.98433 * 14 13 11 35 35 H 1.08995 * 110.46580 * 81.69942 * 14 13 11 36 36 H 1.07993 * 125.99285 * 0.02562 * 19 18 16 37 37 H 1.08997 * 109.47234 * 65.02035 * 22 21 20 38 38 H 1.08997 * 109.46941 * 185.02349 * 22 21 20 39 39 H 1.08997 * 109.47146 * 299.99989 * 23 22 21 40 40 H 1.09002 * 109.46924 * 59.99963 * 23 22 21 41 41 H 1.08000 * 126.28928 * 179.74028 * 25 21 20 42 42 H 1.09009 * 109.75651 * 300.94648 * 28 9 7 43 43 H 1.08996 * 109.76300 * 61.64552 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3919 2.1074 -1.3948 5 1 1.5045 2.6198 0.8031 6 1 3.5965 1.4119 0.5917 7 6 2.0102 -1.2021 -0.0005 8 1 3.0870 -1.2040 -0.0841 9 7 1.3297 -2.3858 0.1049 10 6 1.9467 -3.7116 0.2205 11 6 0.8644 -4.6610 0.7684 12 1 0.9257 -4.8124 1.8461 13 6 0.9189 -5.9809 -0.0448 14 6 0.2645 -5.5554 -1.3822 15 7 -0.8088 -4.6218 -0.9963 16 6 -1.9158 -4.3576 -1.7182 17 8 -2.1196 -4.9531 -2.7587 18 6 -2.8798 -3.3469 -1.2464 19 6 -2.8550 -2.6816 0.0000 20 7 -3.8722 -1.8661 0.0424 21 7 -4.5863 -1.9693 -1.1566 22 6 -5.7957 -1.2172 -1.5002 23 6 -6.8537 -1.4295 -0.4155 24 9 -8.0087 -0.7117 -0.7440 25 6 -3.9762 -2.8740 -1.9389 26 6 -0.4712 -4.0221 0.2997 27 1 -1.2648 -4.1826 1.0295 28 6 -0.1299 -2.5260 0.1202 29 1 -0.4850 0.8400 0.0004 30 1 2.7903 -3.6712 0.9096 31 1 2.2814 -4.0536 -0.7588 32 1 0.3373 -6.7636 0.4424 33 1 1.9489 -6.3022 -0.1994 34 1 -0.1530 -6.4230 -1.8933 35 1 0.9923 -5.0542 -2.0201 36 1 -2.1223 -2.8234 0.7806 37 1 -5.5559 -0.1563 -1.5712 38 1 -6.1815 -1.5674 -2.4576 39 1 -7.0935 -2.4903 -0.3445 40 1 -6.4677 -1.0793 0.5419 41 1 -4.2887 -3.1791 -2.9267 42 1 -0.5456 -1.9611 0.9547 43 1 -0.5454 -2.1572 -0.8175 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075975288.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:44 Heat of formation + Delta-G solvation = 22.522023 kcal Electronic energy + Delta-G solvation = -28275.663771 eV Core-core repulsion = 24272.671163 eV Total energy + Delta-G solvation = -4002.992608 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.155 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.78240 -42.52759 -41.21351 -39.14818 -36.35147 -35.34347 -33.79211 -32.83165 -31.44231 -30.64267 -29.73387 -28.00674 -26.57058 -25.16717 -24.36176 -22.70828 -22.38391 -21.91711 -20.86888 -20.20563 -18.84530 -18.55850 -17.65304 -17.40499 -16.89626 -16.88739 -16.62510 -16.33354 -16.02392 -15.68205 -15.52410 -15.20175 -14.85582 -14.67466 -14.33405 -14.13979 -14.00204 -13.82949 -13.59090 -13.37620 -12.96642 -12.84239 -12.74547 -12.59760 -12.38083 -12.16302 -12.10208 -11.86172 -11.76748 -11.72970 -11.56310 -11.36264 -10.88394 -10.67297 -10.52641 -9.84998 -9.44135 -8.82057 -7.81055 -5.15681 0.51960 1.20427 1.30627 1.45301 1.45795 1.55004 2.09938 2.49038 2.50381 3.15753 3.35154 3.47926 3.51677 3.61612 3.76667 3.79739 3.87972 3.95753 4.01302 4.06346 4.17202 4.26145 4.30531 4.40316 4.51590 4.55534 4.61911 4.71687 4.78474 4.84380 4.87162 4.98660 5.16963 5.21188 5.33840 5.42007 5.46359 5.53428 5.58241 5.78547 5.85319 6.23761 6.53441 6.60669 7.14297 7.22358 7.84062 8.44920 9.26156 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.009955 B = 0.005065 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2811.857121 B = 5526.458964 C = 7717.800970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.058 4.058 3 Si 0.968 3.032 4 H -0.295 1.295 5 H -0.296 1.296 6 H -0.267 1.267 7 C -0.242 4.242 8 H 0.080 0.920 9 N -0.624 5.624 10 C 0.134 3.866 11 C -0.098 4.098 12 H 0.128 0.872 13 C -0.104 4.104 14 C 0.103 3.897 15 N -0.601 5.601 16 C 0.609 3.391 17 O -0.592 6.592 18 C -0.312 4.312 19 C 0.091 3.909 20 N -0.318 5.318 21 N -0.360 5.360 22 C 0.097 3.903 23 C 0.061 3.939 24 F -0.215 7.215 25 C 0.137 3.863 26 C 0.102 3.898 27 H 0.107 0.893 28 C 0.189 3.811 29 H 0.242 0.758 30 H 0.045 0.955 31 H 0.019 0.981 32 H 0.100 0.900 33 H 0.107 0.893 34 H 0.082 0.918 35 H 0.048 0.952 36 H 0.196 0.804 37 H 0.098 0.902 38 H 0.144 0.856 39 H 0.096 0.904 40 H 0.082 0.918 41 H 0.215 0.785 42 H 0.028 0.972 43 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.979 -10.513 0.783 13.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.251 4.251 3 Si 0.798 3.202 4 H -0.223 1.223 5 H -0.222 1.222 6 H -0.191 1.191 7 C -0.371 4.371 8 H 0.098 0.902 9 N -0.350 5.350 10 C 0.009 3.991 11 C -0.117 4.117 12 H 0.146 0.854 13 C -0.142 4.142 14 C -0.019 4.019 15 N -0.332 5.332 16 C 0.401 3.599 17 O -0.476 6.476 18 C -0.327 4.327 19 C -0.096 4.096 20 N -0.137 5.137 21 N -0.139 5.139 22 C -0.023 4.023 23 C 0.005 3.995 24 F -0.196 7.196 25 C -0.015 4.015 26 C -0.003 4.003 27 H 0.125 0.875 28 C 0.063 3.937 29 H 0.051 0.949 30 H 0.063 0.937 31 H 0.037 0.963 32 H 0.119 0.881 33 H 0.125 0.875 34 H 0.101 0.899 35 H 0.067 0.933 36 H 0.212 0.788 37 H 0.116 0.884 38 H 0.162 0.838 39 H 0.114 0.886 40 H 0.100 0.900 41 H 0.232 0.768 42 H 0.046 0.954 43 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges -9.966 -9.615 0.870 13.875 hybrid contribution 0.966 1.106 -0.766 1.656 sum -9.000 -8.508 0.104 12.386 Atomic orbital electron populations 1.70157 1.05778 1.24726 1.57742 1.25521 0.96526 1.00461 1.02641 0.85214 0.78132 0.80066 0.76832 1.22281 1.22227 1.19146 1.19354 0.91226 0.83722 1.42796 0.90220 1.44482 1.02269 1.01988 1.86309 1.21571 0.95490 0.84627 0.97443 1.23175 0.91980 0.94911 1.01644 0.85442 1.22776 1.02818 0.95977 0.92665 1.22344 0.88493 0.92370 0.98703 1.48157 1.20185 1.43523 1.21312 1.17055 0.79934 0.80777 0.82166 1.90671 1.77705 1.53938 1.25252 1.20243 1.03391 1.10109 0.98921 1.24839 0.95199 0.91833 0.97763 1.77136 1.09380 1.23501 1.03721 1.48470 1.22039 1.31146 1.12259 1.22566 0.80585 0.98136 1.01036 1.22080 0.81068 0.97569 0.98736 1.92777 1.51513 1.80935 1.94358 1.23267 0.91652 0.88937 0.97670 1.23015 0.98298 0.94146 0.84809 0.87508 1.21374 0.84124 0.89918 0.98275 0.94851 0.93680 0.96347 0.88102 0.87489 0.89943 0.93340 0.78768 0.88377 0.83839 0.88624 0.89967 0.76832 0.95382 0.97235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.10 10.27 21.65 0.22 -54.88 16 2 C -0.06 -3.23 5.48 84.86 0.47 -2.77 16 3 Si 0.97 45.79 29.56 68.60 2.03 47.82 16 4 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 5 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 6 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 7 C -0.24 -13.28 10.24 84.03 0.86 -12.42 16 8 H 0.08 4.22 7.83 -2.91 -0.02 4.19 16 9 N -0.62 -30.71 3.38 -696.20 -2.35 -33.06 16 10 C 0.13 4.98 6.46 86.70 0.56 5.54 16 11 C -0.10 -2.76 4.28 -8.92 -0.04 -2.79 16 12 H 0.13 2.95 8.14 -2.39 -0.02 2.93 16 13 C -0.10 -2.25 6.34 31.95 0.20 -2.05 16 14 C 0.10 3.04 6.46 86.84 0.56 3.60 16 15 N -0.60 -21.10 2.98 -788.07 -2.35 -23.45 16 16 C 0.61 23.43 7.54 86.66 0.65 24.08 16 17 O -0.59 -24.82 17.13 -4.04 -0.07 -24.89 16 18 C -0.31 -11.14 5.56 -20.15 -0.11 -11.25 16 19 C 0.09 3.33 9.15 85.65 0.78 4.12 16 20 N -0.32 -11.13 12.33 -56.28 -0.69 -11.82 16 21 N -0.36 -9.92 3.65 -346.29 -1.26 -11.18 16 22 C 0.10 1.79 6.94 86.38 0.60 2.38 16 23 C 0.06 1.06 7.73 71.98 0.56 1.62 16 24 F -0.21 -4.21 17.36 44.97 0.78 -3.43 16 25 C 0.14 3.94 11.26 84.27 0.95 4.89 16 26 C 0.10 3.46 2.77 46.25 0.13 3.59 16 27 H 0.11 3.18 6.42 -2.39 -0.02 3.17 16 28 C 0.19 8.74 3.13 86.86 0.27 9.01 16 29 H 0.24 14.21 8.31 -92.71 -0.77 13.43 16 30 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.02 0.71 6.59 -2.39 -0.02 0.69 16 32 H 0.10 1.70 8.14 -2.38 -0.02 1.68 16 33 H 0.11 1.87 8.07 -2.39 -0.02 1.85 16 34 H 0.08 2.29 7.99 -2.38 -0.02 2.27 16 35 H 0.05 1.62 7.24 -2.39 -0.02 1.60 16 36 H 0.20 7.24 3.29 -2.91 -0.01 7.23 16 37 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.14 1.60 8.06 -2.39 -0.02 1.58 16 39 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.22 4.64 8.06 -2.91 -0.02 4.61 16 42 H 0.03 1.46 6.22 -2.38 -0.01 1.44 16 43 H 0.01 0.52 6.16 -2.39 -0.01 0.51 16 Total: -1.00 -75.41 344.42 3.78 -71.63 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: 1.04 Total: 15.72 kcal Atomic # 6 Polarization: 21.11 SS G_CDS: 6.44 Total: 27.55 kcal Atomic # 7 Polarization: -127.96 SS G_CDS: -6.44 Total: -134.40 kcal Atomic # 8 Polarization: -24.82 SS G_CDS: -0.07 Total: -24.89 kcal Atomic # 9 Polarization: -4.21 SS G_CDS: 0.78 Total: -3.43 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -75.41 3.78 -71.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075975288.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.148 kcal (2) G-P(sol) polarization free energy of solvation -75.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds