Wall clock time and date at job start Fri Apr 10 2020 18:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 109.46839 * 2 1 4 4 C 1.37987 * 120.04214 * 261.51932 * 3 2 1 5 5 C 1.38309 * 120.16774 * 179.97438 * 4 3 2 6 6 C 1.38589 * 120.26714 * 0.02562 * 5 4 3 7 7 F 1.35103 * 119.95226 * 179.97438 * 6 5 4 8 8 C 1.38169 * 120.09645 * 359.74106 * 6 5 4 9 9 C 1.39554 * 120.04734 * 81.49435 * 3 2 1 10 10 C 1.47851 * 120.13105 * 0.02562 * 9 3 2 11 11 O 1.21545 * 120.00191 * 354.70500 * 10 9 3 12 12 N 1.34784 * 119.99508 * 174.70444 * 10 9 3 13 13 C 1.46504 * 119.99597 * 180.02562 * 12 10 9 14 14 H 1.08994 * 110.64005 * 31.85820 * 13 12 10 15 15 C 1.54315 * 110.71938 * 268.52091 * 13 12 10 16 16 N 1.47283 * 107.30992 * 219.45781 * 15 13 12 17 17 C 1.36934 * 125.79701 * 178.92669 * 16 15 13 18 18 H 1.07997 * 120.00201 * 0.02811 * 17 16 15 19 19 C 1.38816 * 120.00016 * 180.02562 * 17 16 15 20 20 N 1.31613 * 120.00103 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00033 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47232 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47430 * 120.00334 * 21 19 17 24 24 H 1.48505 * 109.47333 * 240.00570 * 21 19 17 25 25 C 1.47429 * 108.55488 * 358.92299 * 16 15 13 26 26 C 1.54912 * 104.92715 * 24.15806 * 25 16 15 27 27 H 1.08999 * 111.00091 * 81.01036 * 26 25 16 28 28 O 1.42900 * 111.00049 * 204.85703 * 26 25 16 29 29 H 1.08996 * 109.47241 * 60.00268 * 1 2 3 30 30 H 1.09007 * 109.46984 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47396 * 299.99989 * 1 2 3 32 32 H 1.09003 * 109.47068 * 240.00122 * 2 1 3 33 33 H 1.08996 * 109.47241 * 119.99732 * 2 1 3 34 34 H 1.07994 * 119.91793 * 359.97438 * 4 3 2 35 35 H 1.08003 * 119.86360 * 179.97438 * 5 4 3 36 36 H 1.07999 * 120.09091 * 180.25290 * 8 6 5 37 37 H 0.96994 * 120.00410 * 359.97438 * 12 10 9 38 38 H 1.09005 * 109.88721 * 338.86455 * 15 13 12 39 39 H 1.09001 * 109.88242 * 100.02658 * 15 13 12 40 40 H 0.96998 * 120.00264 * 179.97438 * 20 19 17 41 41 H 1.09000 * 110.37127 * 265.26227 * 25 16 15 42 42 H 1.08999 * 110.36550 * 143.05242 * 25 16 15 43 43 H 0.96696 * 114.00093 * 298.54688 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.4286 2.0135 -1.1814 5 6 2.8895 3.3175 -1.1845 6 6 2.9569 4.0373 -0.0021 7 9 3.4087 5.3106 -0.0124 8 6 2.5584 3.4564 1.1864 9 6 2.0967 2.1392 1.1947 10 6 1.6733 1.5090 2.4634 11 8 1.1785 0.3989 2.4551 12 7 1.8361 2.1657 3.6292 13 6 1.4170 1.5411 4.8864 14 1 1.5325 0.4585 4.8347 15 6 -0.0387 1.9232 5.2273 16 7 -0.1037 2.1481 6.6813 17 6 -1.2164 2.5257 7.3845 18 1 -2.1525 2.6840 6.8697 19 6 -1.1412 2.7050 8.7589 20 7 -0.0003 2.5125 9.3863 21 14 -2.6593 3.2194 9.7182 22 1 -3.8062 3.3689 8.7869 23 1 -2.9782 2.1833 10.7331 24 1 -2.4005 4.5144 10.3973 25 6 1.2314 1.8985 7.2548 26 6 2.2178 2.1221 6.0815 27 1 2.4196 3.1836 5.9376 28 8 3.4311 1.3955 6.2869 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.3788 1.4577 -2.1060 35 1 3.1988 3.7764 -2.1120 36 1 2.6071 4.0188 2.1071 37 1 2.2313 3.0515 3.6358 38 1 -0.3161 2.8353 4.6988 39 1 -0.7102 1.1115 4.9475 40 1 0.0523 2.6381 10.3466 41 1 1.3020 0.8739 7.6198 42 1 1.4354 2.6027 8.0614 43 1 3.9175 1.6584 7.0802 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077300957.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:47 Heat of formation + Delta-G solvation = -73.261419 kcal Electronic energy + Delta-G solvation = -27355.696456 eV Core-core repulsion = 23316.257615 eV Total energy + Delta-G solvation = -4039.438841 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.13266 -40.57793 -38.77236 -37.59390 -35.13869 -34.65490 -33.46565 -32.16410 -31.23914 -29.29810 -28.38419 -27.05000 -24.94759 -24.02937 -23.73641 -21.58304 -20.92479 -20.44292 -20.05190 -18.33725 -17.18434 -17.02754 -16.70685 -16.07594 -15.97405 -15.83491 -15.60468 -14.89830 -14.72719 -14.37909 -14.25973 -13.92340 -13.80338 -13.42098 -13.29708 -13.00021 -12.86870 -12.61144 -12.36504 -11.98317 -11.80333 -11.73972 -11.50557 -11.37290 -11.18434 -11.07339 -10.88168 -10.83228 -10.18784 -9.97823 -9.74990 -9.68603 -9.44814 -9.32717 -8.91642 -8.76218 -8.71585 -6.96512 -5.76085 -3.18557 0.48949 0.85573 2.70469 3.16430 3.35242 3.41271 3.43583 3.52262 3.91270 4.33522 4.35942 4.46270 4.56108 4.58298 4.78920 4.94699 5.19920 5.24758 5.38026 5.38172 5.46648 5.48688 5.58740 5.60453 5.64844 5.77917 5.79489 5.82544 5.95672 6.03940 6.05215 6.12633 6.28138 6.43621 6.46334 6.54231 6.61287 6.86646 7.26515 7.47736 7.59080 7.68285 8.05867 8.20548 8.28598 9.09811 9.70160 10.32506 11.28267 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016464 B = 0.003090 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.292376 B = 9058.165004 C = 9374.827261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.090 4.090 3 C -0.030 4.030 4 C -0.101 4.101 5 C -0.128 4.128 6 C 0.085 3.915 7 F -0.138 7.138 8 C -0.118 4.118 9 C -0.102 4.102 10 C 0.556 3.444 11 O -0.520 6.520 12 N -0.708 5.708 13 C 0.142 3.858 14 H 0.105 0.895 15 C 0.129 3.871 16 N -0.600 5.600 17 C -0.222 4.222 18 H 0.081 0.919 19 C -0.011 4.011 20 N -0.924 5.924 21 Si 0.918 3.082 22 H -0.279 1.279 23 H -0.289 1.289 24 H -0.290 1.290 25 C 0.128 3.872 26 C 0.066 3.934 27 H 0.061 0.939 28 O -0.566 6.566 29 H 0.043 0.957 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.103 0.897 34 H 0.139 0.861 35 H 0.139 0.861 36 H 0.140 0.860 37 H 0.397 0.603 38 H 0.031 0.969 39 H 0.035 0.965 40 H 0.253 0.747 41 H 0.026 0.974 42 H 0.113 0.887 43 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.146 0.952 -19.417 21.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.127 4.127 3 C -0.031 4.031 4 C -0.119 4.119 5 C -0.147 4.147 6 C 0.065 3.935 7 F -0.117 7.117 8 C -0.137 4.137 9 C -0.105 4.105 10 C 0.343 3.657 11 O -0.398 6.398 12 N -0.358 5.358 13 C 0.037 3.963 14 H 0.123 0.877 15 C 0.002 3.998 16 N -0.328 5.328 17 C -0.350 4.350 18 H 0.099 0.901 19 C -0.206 4.206 20 N -0.573 5.573 21 Si 0.748 3.252 22 H -0.204 1.204 23 H -0.216 1.216 24 H -0.217 1.217 25 C 0.002 3.998 26 C 0.006 3.994 27 H 0.079 0.921 28 O -0.371 6.371 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.121 0.879 34 H 0.156 0.844 35 H 0.156 0.844 36 H 0.157 0.843 37 H 0.232 0.768 38 H 0.049 0.951 39 H 0.053 0.947 40 H 0.064 0.936 41 H 0.044 0.956 42 H 0.131 0.869 43 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 7.532 -0.053 -19.737 21.125 hybrid contribution -0.264 1.388 1.025 1.746 sum 7.268 1.335 -18.711 20.118 Atomic orbital electron populations 1.21621 0.94013 1.01920 1.01716 1.20782 0.97112 0.91147 1.03660 1.20169 0.94681 0.97030 0.91215 1.20925 0.98769 0.94106 0.98059 1.21317 1.00881 0.95194 0.97321 1.17485 1.01300 0.80135 0.94545 1.91523 1.86808 1.36014 1.97310 1.21312 0.99461 0.95148 0.97821 1.19723 1.02843 0.93697 0.94284 1.18065 0.78942 0.85477 0.83263 1.90744 1.43534 1.18942 1.86569 1.45942 1.62977 1.20587 1.06338 1.22061 0.94378 0.99110 0.80703 0.87736 1.21675 0.92676 0.98208 0.87198 1.44345 1.07333 1.80546 1.00555 1.19152 0.88046 1.38189 0.89639 0.90118 1.24799 0.97628 1.01877 0.96283 1.69731 1.23410 1.55822 1.08304 0.85946 0.81589 0.77817 0.79833 1.20434 1.21637 1.21668 1.22580 0.82464 1.01209 0.93532 1.23646 0.85116 0.93581 0.97062 0.92100 1.86404 1.36545 1.65085 1.49071 0.93801 0.92465 0.91463 0.91891 0.87916 0.84359 0.84357 0.84261 0.76800 0.95129 0.94700 0.93616 0.95613 0.86898 0.77460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.42 37.16 0.35 -1.20 16 2 C -0.09 -1.00 5.33 -27.88 -0.15 -1.15 16 3 C -0.03 -0.33 5.17 -104.22 -0.54 -0.87 16 4 C -0.10 -0.87 9.66 -39.65 -0.38 -1.25 16 5 C -0.13 -1.10 10.02 -39.43 -0.40 -1.50 16 6 C 0.08 0.87 7.29 -39.48 -0.29 0.59 16 7 F -0.14 -1.51 17.26 2.25 0.04 -1.47 16 8 C -0.12 -1.28 9.51 -39.11 -0.37 -1.66 16 9 C -0.10 -1.26 5.87 -104.98 -0.62 -1.88 16 10 C 0.56 8.35 7.63 -12.32 -0.09 8.26 16 11 O -0.52 -9.01 11.22 5.33 0.06 -8.95 16 12 N -0.71 -10.60 5.05 -52.98 -0.27 -10.87 16 13 C 0.14 2.61 3.05 -66.10 -0.20 2.41 16 14 H 0.10 2.12 7.55 -51.93 -0.39 1.72 16 15 C 0.13 2.74 7.01 -2.93 -0.02 2.72 16 16 N -0.60 -15.05 3.40 -169.86 -0.58 -15.63 16 17 C -0.22 -6.08 10.28 -15.06 -0.15 -6.23 16 18 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 19 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 20 N -0.92 -26.00 10.09 55.49 0.56 -25.44 16 21 Si 0.92 21.64 29.55 -169.99 -5.02 16.62 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 C 0.13 2.98 5.62 -2.53 -0.01 2.97 16 26 C 0.07 1.22 4.06 -24.58 -0.10 1.12 16 27 H 0.06 1.05 8.01 -51.93 -0.42 0.63 16 28 O -0.57 -9.56 13.47 -35.23 -0.47 -10.03 16 29 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.94 6.55 -51.93 -0.34 0.60 16 32 H 0.06 0.55 8.02 -51.93 -0.42 0.13 16 33 H 0.10 1.37 5.97 -51.93 -0.31 1.06 16 34 H 0.14 0.83 8.04 -52.49 -0.42 0.41 16 35 H 0.14 0.85 8.06 -52.48 -0.42 0.43 16 36 H 0.14 1.32 6.44 -52.49 -0.34 0.99 16 37 H 0.40 4.99 6.63 -40.82 -0.27 4.72 16 38 H 0.03 0.63 8.03 -51.93 -0.42 0.22 16 39 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 41 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.11 2.89 5.86 -51.93 -0.30 2.58 16 43 H 0.38 4.92 9.11 45.56 0.42 5.33 16 LS Contribution 353.73 15.07 5.33 5.33 Total: -1.00 -31.24 353.73 -8.30 -39.54 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -4.87 Total: 8.96 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: -3.07 Total: 1.95 kcal Atomic # 7 Polarization: -51.65 SS G_CDS: -0.29 Total: -51.94 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: -0.41 Total: -18.99 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.24 -8.30 -39.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077300957.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.726 kcal (2) G-P(sol) polarization free energy of solvation -31.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds