Wall clock time and date at job start Fri Apr 10 2020 18:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38264 * 119.97574 * 2 1 4 4 C 1.38175 * 120.02891 * 180.02562 * 3 2 1 5 5 C 1.38490 * 119.97331 * 359.97438 * 4 3 2 6 6 F 1.35093 * 120.02784 * 179.97438 * 5 4 3 7 7 C 1.38435 * 119.94736 * 359.97438 * 5 4 3 8 8 C 1.50696 * 120.01429 * 180.02562 * 7 5 4 9 9 C 1.50697 * 109.46901 * 279.99391 * 8 7 5 10 10 O 1.21279 * 120.00351 * 359.97438 * 9 8 7 11 11 N 1.34781 * 120.00009 * 179.97438 * 9 8 7 12 12 C 1.46496 * 119.99914 * 179.97438 * 11 9 8 13 13 H 1.09000 * 110.64248 * 34.30400 * 12 11 9 14 14 C 1.54323 * 110.72443 * 271.15751 * 12 11 9 15 15 N 1.47020 * 107.27467 * 219.44579 * 14 12 11 16 16 C 1.36942 * 125.64811 * 178.97428 * 15 14 12 17 17 H 1.07997 * 119.99842 * 359.97438 * 16 15 14 18 18 C 1.38807 * 119.99745 * 179.97438 * 16 15 14 19 19 N 1.31617 * 120.00149 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00035 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47115 * 59.99692 * 20 18 16 22 22 H 1.48502 * 109.47396 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46938 * 300.00290 * 20 18 16 24 24 C 1.47421 * 108.70072 * 358.94042 * 15 14 12 25 25 C 1.55121 * 104.94566 * 24.00518 * 24 15 14 26 26 H 1.08994 * 110.93794 * 81.21705 * 25 24 15 27 27 O 1.42904 * 111.16046 * 205.13232 * 25 24 15 28 28 C 1.38222 * 119.97557 * 0.03472 * 7 5 4 29 29 H 1.09001 * 109.47533 * 89.99961 * 1 2 3 30 30 H 1.09003 * 109.47040 * 210.00011 * 1 2 3 31 31 H 1.09006 * 109.47208 * 329.99965 * 1 2 3 32 32 H 1.07998 * 119.99008 * 0.02562 * 3 2 1 33 33 H 1.08001 * 120.01835 * 179.70678 * 4 3 2 34 34 H 1.09000 * 109.46916 * 39.99623 * 8 7 5 35 35 H 1.09001 * 109.47162 * 159.99234 * 8 7 5 36 36 H 0.97001 * 119.99992 * 0.02562 * 11 9 8 37 37 H 1.09002 * 109.87876 * 338.86507 * 14 12 11 38 38 H 1.09002 * 109.88356 * 100.02648 * 14 12 11 39 39 H 0.97002 * 119.99879 * 179.97438 * 19 18 16 40 40 H 1.09005 * 110.36549 * 142.96911 * 24 15 14 41 41 H 1.08998 * 110.36889 * 265.17749 * 24 15 14 42 42 H 0.96700 * 114.00148 * 292.16782 * 27 25 24 43 43 H 1.07995 * 119.99118 * 179.97438 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1978 1.1977 0.0000 4 6 3.5795 1.1990 -0.0005 5 6 4.2725 -0.0001 -0.0005 6 9 5.6234 -0.0001 -0.0016 7 6 3.5798 -1.1986 0.0005 8 6 4.3324 -2.5042 0.0011 9 6 4.7963 -2.8172 -1.3981 10 8 4.5405 -2.0553 -2.3064 11 7 5.4954 -3.9438 -1.6401 12 6 5.9459 -4.2483 -3.0004 13 1 6.1994 -3.3329 -3.5352 14 6 4.8704 -5.0477 -3.7658 15 7 5.5689 -6.0649 -4.5651 16 6 4.9703 -6.9941 -5.3736 17 1 3.8943 -7.0196 -5.4622 18 6 5.7467 -7.9032 -6.0790 19 7 7.0580 -7.8724 -5.9705 20 14 4.9304 -9.1703 -7.1824 21 1 4.1442 -8.4773 -8.2346 22 1 5.9715 -10.0169 -7.8185 23 1 4.0263 -10.0243 -6.3708 24 6 7.0203 -5.9183 -4.3528 25 6 7.1544 -5.2210 -2.9736 26 1 7.0580 -5.9417 -2.1617 27 8 8.3868 -4.5041 -2.8757 28 6 2.1976 -1.1974 0.0009 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5139 32 1 1.6572 2.1327 0.0004 33 1 4.1189 2.1346 -0.0053 34 1 5.1961 -2.4254 0.6613 35 1 3.6773 -3.3010 0.3535 36 1 5.6996 -4.5533 -0.9137 37 1 4.1950 -5.5307 -3.0595 38 1 4.3099 -4.3815 -4.4215 39 1 7.6005 -8.5079 -6.4632 40 1 7.5015 -6.8962 -4.3329 41 1 7.4573 -5.2972 -5.1346 42 1 9.1706 -5.0702 -2.8556 43 1 1.6569 -2.1323 0.0013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078044902.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:55 Heat of formation + Delta-G solvation = -105.846416 kcal Electronic energy + Delta-G solvation = -26930.757712 eV Core-core repulsion = 22889.905880 eV Total energy + Delta-G solvation = -4040.851833 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.89691 -41.22235 -40.12573 -39.22873 -36.71572 -35.58380 -34.39673 -33.60375 -32.91320 -30.48523 -29.30412 -28.25023 -27.38566 -26.27490 -23.69652 -22.75475 -22.36119 -21.66832 -21.12710 -19.12956 -18.56629 -18.53686 -17.97113 -17.66220 -17.32908 -16.69579 -16.52396 -16.14506 -15.88710 -15.60540 -15.33274 -14.96620 -14.86807 -14.66254 -14.45603 -14.38338 -14.16648 -14.04203 -13.79419 -13.30144 -13.23144 -13.10697 -12.84055 -12.75635 -12.70210 -12.54984 -12.36300 -12.11211 -11.94145 -11.91417 -11.45540 -11.23995 -10.87310 -10.77462 -10.19620 -9.89874 -9.38429 -8.99320 -7.83125 -5.29955 0.16469 0.26483 1.46882 1.50314 1.56597 1.59842 2.05713 2.46230 2.65213 3.06132 3.28407 3.35676 3.49530 3.60727 3.74421 3.77411 3.94222 3.97681 4.05888 4.19022 4.25098 4.31503 4.40631 4.46068 4.52335 4.58314 4.70979 4.81603 4.88512 4.92837 4.98795 5.03872 5.20235 5.31156 5.33167 5.35207 5.42083 5.44113 5.58234 5.65859 5.97883 6.19344 6.51964 6.84935 7.03058 7.22918 7.67292 8.29784 9.18542 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.018914 B = 0.002822 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.057692 B = 9920.204367 C =11047.276478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.101 4.101 3 C -0.095 4.095 4 C -0.160 4.160 5 C 0.075 3.925 6 F -0.154 7.154 7 C -0.111 4.111 8 C -0.093 4.093 9 C 0.512 3.488 10 O -0.580 6.580 11 N -0.702 5.702 12 C 0.156 3.844 13 H 0.069 0.931 14 C 0.133 3.867 15 N -0.619 5.619 16 C -0.247 4.247 17 H 0.082 0.918 18 C -0.061 4.061 19 N -0.947 5.947 20 Si 0.985 3.015 21 H -0.282 1.282 22 H -0.290 1.290 23 H -0.272 1.272 24 C 0.134 3.866 25 C 0.092 3.908 26 H 0.091 0.909 27 O -0.569 6.569 28 C -0.091 4.091 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.159 0.841 33 H 0.146 0.854 34 H 0.123 0.877 35 H 0.145 0.855 36 H 0.418 0.582 37 H 0.045 0.955 38 H 0.011 0.989 39 H 0.251 0.749 40 H 0.092 0.908 41 H -0.012 1.012 42 H 0.397 0.603 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.779 12.822 19.274 24.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.101 4.101 3 C -0.113 4.113 4 C -0.179 4.179 5 C 0.056 3.944 6 F -0.132 7.132 7 C -0.112 4.112 8 C -0.132 4.132 9 C 0.300 3.700 10 O -0.459 6.459 11 N -0.354 5.354 12 C 0.049 3.951 13 H 0.087 0.913 14 C 0.007 3.993 15 N -0.346 5.346 16 C -0.375 4.375 17 H 0.100 0.900 18 C -0.254 4.254 19 N -0.596 5.596 20 Si 0.812 3.188 21 H -0.209 1.209 22 H -0.216 1.216 23 H -0.197 1.197 24 C 0.008 3.992 25 C 0.031 3.969 26 H 0.109 0.891 27 O -0.377 6.377 28 C -0.109 4.109 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.103 0.897 32 H 0.176 0.824 33 H 0.164 0.836 34 H 0.141 0.859 35 H 0.163 0.837 36 H 0.256 0.744 37 H 0.063 0.937 38 H 0.029 0.971 39 H 0.061 0.939 40 H 0.110 0.890 41 H 0.005 0.995 42 H 0.248 0.752 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -9.245 13.711 18.515 24.825 hybrid contribution 0.884 -1.231 -0.965 1.797 sum -8.361 12.480 17.549 23.100 Atomic orbital electron populations 1.20838 0.88559 1.04307 1.03069 1.20337 0.98089 0.92571 0.99125 1.21240 0.92493 0.99331 0.98203 1.21370 0.95976 0.96872 1.03676 1.17917 0.76482 0.95495 1.04521 1.91440 1.30169 1.97506 1.94115 1.19545 0.95002 0.92961 1.03696 1.20655 1.02976 0.96718 0.92893 1.21192 0.76919 0.80145 0.91775 1.90711 1.57360 1.49676 1.48189 1.45753 1.55999 1.24107 1.09591 1.21500 0.92642 0.97206 0.83745 0.91320 1.21660 0.94318 0.90033 0.93310 1.44540 1.02443 1.35274 1.52388 1.19426 0.91870 1.07277 1.18961 0.90036 1.25654 0.96253 1.01686 1.01797 1.69954 1.04106 1.39367 1.46193 0.85064 0.77014 0.78336 0.78352 1.20852 1.21634 1.19747 1.22403 0.85236 1.00027 0.91571 1.23298 0.83635 0.91978 0.97998 0.89109 1.86399 1.16248 1.38232 1.96806 1.21120 0.91739 0.99661 0.98400 0.90866 0.90260 0.89731 0.82377 0.83599 0.85920 0.83725 0.74446 0.93672 0.97117 0.93939 0.89007 0.99450 0.75245 0.83263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 10.01 71.23 0.71 -0.48 16 2 C -0.10 -1.72 5.88 -19.86 -0.12 -1.84 16 3 C -0.09 -1.61 9.70 22.26 0.22 -1.39 16 4 C -0.16 -3.39 10.03 22.31 0.22 -3.17 16 5 C 0.07 1.95 7.13 22.38 0.16 2.11 16 6 F -0.15 -4.53 16.66 44.97 0.75 -3.78 16 7 C -0.11 -2.59 4.43 -19.82 -0.09 -2.68 16 8 C -0.09 -1.89 5.56 29.10 0.16 -1.73 16 9 C 0.51 15.62 7.81 87.66 0.69 16.30 16 10 O -0.58 -23.69 15.63 -3.03 -0.05 -23.73 16 11 N -0.70 -20.46 5.12 -436.92 -2.24 -22.69 16 12 C 0.16 6.01 3.00 46.18 0.14 6.15 16 13 H 0.07 3.11 7.62 -2.39 -0.02 3.09 16 14 C 0.13 5.94 7.00 86.73 0.61 6.54 16 15 N -0.62 -32.44 3.40 -691.57 -2.35 -34.79 16 16 C -0.25 -13.90 10.27 84.03 0.86 -13.04 16 17 H 0.08 4.41 7.83 -2.91 -0.02 4.39 16 18 C -0.06 -3.42 5.49 84.86 0.47 -2.95 16 19 N -0.95 -55.10 10.09 21.65 0.22 -54.88 16 20 Si 0.98 44.98 29.55 68.60 2.03 47.01 16 21 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 22 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 23 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 24 C 0.13 6.56 5.63 86.93 0.49 7.05 16 25 C 0.09 3.40 4.06 32.06 0.13 3.53 16 26 H 0.09 2.90 8.00 -2.39 -0.02 2.88 16 27 O -0.57 -19.31 13.48 -148.98 -2.01 -21.32 16 28 C -0.09 -1.77 9.32 22.26 0.21 -1.57 16 29 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.08 0.69 8.08 -2.39 -0.02 0.67 16 31 H 0.08 0.62 8.09 -2.38 -0.02 0.60 16 32 H 0.16 1.66 8.06 -2.91 -0.02 1.64 16 33 H 0.15 2.54 8.06 -2.91 -0.02 2.51 16 34 H 0.12 2.06 7.95 -2.39 -0.02 2.04 16 35 H 0.14 1.82 8.00 -2.39 -0.02 1.80 16 36 H 0.42 8.86 8.54 -92.71 -0.79 8.07 16 37 H 0.05 1.87 8.03 -2.39 -0.02 1.85 16 38 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 40 H 0.09 4.90 5.87 -2.38 -0.01 4.89 16 41 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 42 H 0.40 9.91 9.12 -74.06 -0.68 9.24 16 43 H 0.15 2.22 8.04 -2.91 -0.02 2.19 16 Total: -1.00 -77.93 364.59 0.80 -77.13 By element: Atomic # 1 Polarization: 24.64 SS G_CDS: -0.42 Total: 24.22 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: 4.86 Total: 12.83 kcal Atomic # 7 Polarization: -108.00 SS G_CDS: -4.37 Total: -112.36 kcal Atomic # 8 Polarization: -43.00 SS G_CDS: -2.06 Total: -45.05 kcal Atomic # 9 Polarization: -4.53 SS G_CDS: 0.75 Total: -3.78 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -77.93 0.80 -77.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078044902.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.715 kcal (2) G-P(sol) polarization free energy of solvation -77.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds