Wall clock time and date at job start Fri Apr 10 2020 18:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37836 * 119.93946 * 2 1 4 4 C 1.39649 * 119.88000 * 180.02562 * 3 2 1 5 5 C 1.47729 * 120.11822 * 180.02562 * 4 3 2 6 6 O 1.21568 * 119.99723 * 359.97438 * 5 4 3 7 7 N 1.34770 * 119.99902 * 180.02562 * 5 4 3 8 8 C 1.46503 * 119.99980 * 179.97438 * 7 5 4 9 9 H 1.08999 * 110.63779 * 31.85822 * 8 7 5 10 10 C 1.54327 * 111.00435 * 268.78224 * 8 7 5 11 11 N 1.47023 * 107.26742 * 219.60224 * 10 8 7 12 12 C 1.36931 * 125.65252 * 178.84820 * 11 10 8 13 13 H 1.08002 * 120.00103 * 359.71799 * 12 11 10 14 14 C 1.38812 * 120.00429 * 179.71302 * 12 11 10 15 15 N 1.31624 * 119.99535 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00484 * 179.97438 * 14 12 11 17 17 H 1.48490 * 109.47339 * 180.02562 * 16 14 12 18 18 H 1.48493 * 109.47239 * 300.00542 * 16 14 12 19 19 H 1.48504 * 109.46636 * 60.00101 * 16 14 12 20 20 C 1.47429 * 108.69980 * 358.58082 * 11 10 8 21 21 C 1.54908 * 104.83070 * 24.35768 * 20 11 10 22 22 H 1.09000 * 111.00222 * 81.06850 * 21 20 11 23 23 O 1.42904 * 111.00327 * 204.87385 * 21 20 11 24 24 C 1.39642 * 119.76138 * 0.27361 * 4 3 2 25 25 C 1.37837 * 119.88392 * 359.45151 * 24 4 3 26 26 C 1.50701 * 119.94553 * 180.29700 * 25 24 4 27 27 C 1.38648 * 119.94144 * 180.02562 * 2 1 3 28 28 F 1.35096 * 119.88314 * 359.97438 * 27 2 1 29 29 H 1.08992 * 109.47464 * 89.99860 * 1 2 3 30 30 H 1.09008 * 109.47079 * 210.00383 * 1 2 3 31 31 H 1.08995 * 109.47265 * 329.99782 * 1 2 3 32 32 H 1.08005 * 120.05890 * 359.97438 * 3 2 1 33 33 H 0.96997 * 120.00141 * 359.97438 * 7 5 4 34 34 H 1.08998 * 109.99759 * 100.12500 * 10 8 7 35 35 H 1.08998 * 109.77715 * 338.95489 * 10 8 7 36 36 H 0.97005 * 119.99717 * 179.97438 * 15 14 12 37 37 H 1.09000 * 110.36756 * 143.19419 * 20 11 10 38 38 H 1.08993 * 110.36856 * 265.52140 * 20 11 10 39 39 H 0.96701 * 114.00042 * 298.55101 * 23 21 20 40 40 H 1.08009 * 120.05672 * 179.72974 * 24 4 3 41 41 H 1.09001 * 109.46940 * 270.27761 * 26 25 24 42 42 H 1.09003 * 109.46978 * 30.27696 * 26 25 24 43 43 H 1.08996 * 109.47124 * 150.27427 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1949 1.1944 0.0000 4 6 3.5914 1.1930 -0.0005 5 6 4.3340 2.4701 0.0000 6 8 3.7294 3.5247 0.0005 7 7 5.6817 2.4658 -0.0010 8 6 6.4182 3.7323 -0.0010 9 1 5.8628 4.4997 0.5382 10 6 6.7216 4.1958 -1.4414 11 7 8.0817 4.7540 -1.4429 12 6 8.7375 5.2553 -2.5354 13 1 8.2544 5.2575 -3.5013 14 6 10.0234 5.7609 -2.4016 15 7 10.6124 5.7579 -1.2245 16 14 10.9183 6.4442 -3.8921 17 1 12.2659 6.9178 -3.4863 18 1 11.0565 5.3793 -4.9177 19 1 10.1439 7.5783 -4.4574 20 6 8.6202 4.6904 -0.0719 21 6 7.8315 3.5455 0.6112 22 1 8.2466 2.5730 0.3464 23 8 7.8032 3.7182 2.0295 24 6 4.2833 -0.0200 -0.0069 25 6 3.5856 -1.2087 -0.0011 26 6 4.3309 -2.5185 -0.0012 27 6 2.1990 -1.2014 -0.0005 28 9 1.5200 -2.3693 -0.0005 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3633 0.8899 0.5138 32 1 1.6549 2.1298 -0.0004 33 1 6.1641 1.6243 -0.0018 34 1 6.0068 4.9604 -1.7454 35 1 6.6693 3.3453 -2.1212 36 1 11.5111 6.1109 -1.1310 37 1 9.6849 4.4577 -0.0929 38 1 8.4472 5.6328 0.4476 39 1 8.6766 3.7068 2.4446 40 1 5.3634 -0.0266 -0.0117 41 1 4.5106 -2.8342 -1.0288 42 1 5.2842 -2.3940 0.5127 43 1 3.7372 -3.2744 0.5127 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078196709.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:57 Heat of formation + Delta-G solvation = -103.825767 kcal Electronic energy + Delta-G solvation = -26873.132014 eV Core-core repulsion = 22832.367804 eV Total energy + Delta-G solvation = -4040.764211 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.05053 -41.51159 -40.06645 -39.06243 -36.68806 -35.76940 -34.77350 -33.78476 -32.71589 -30.22152 -28.88700 -28.33053 -27.72241 -26.48880 -24.68617 -22.49880 -22.34025 -21.77490 -21.31623 -19.16466 -18.66534 -18.62049 -18.14858 -17.79956 -17.19069 -16.90752 -16.50816 -16.08752 -15.80893 -15.51961 -15.16407 -14.93308 -14.73761 -14.45948 -14.40302 -14.20192 -14.09413 -14.04198 -13.98079 -13.73746 -13.21690 -13.10557 -12.96435 -12.91709 -12.89409 -12.69970 -12.51084 -12.10505 -12.05146 -11.92934 -11.44610 -11.29281 -10.91998 -10.76416 -10.30425 -9.83538 -9.71453 -8.97983 -7.82358 -5.28565 -0.43789 0.09148 1.48036 1.50900 1.57144 1.60261 1.92700 2.46959 2.58484 3.04555 3.07734 3.29177 3.46903 3.53877 3.61448 3.62874 3.85012 4.03185 4.04601 4.08261 4.19874 4.40075 4.42958 4.45231 4.56045 4.66481 4.71039 4.77419 4.81464 4.84422 4.90149 5.05876 5.07570 5.16830 5.20326 5.23394 5.37375 5.38100 5.43755 5.67054 5.72599 6.20669 6.41673 6.85392 7.04136 7.08497 7.68383 8.30470 9.19280 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.020551 B = 0.002640 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.141862 B =10605.086833 C =10627.855498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.124 4.124 3 C -0.050 4.050 4 C -0.144 4.144 5 C 0.559 3.441 6 O -0.577 6.577 7 N -0.695 5.695 8 C 0.154 3.846 9 H 0.079 0.921 10 C 0.131 3.869 11 N -0.618 5.618 12 C -0.246 4.246 13 H 0.081 0.919 14 C -0.060 4.060 15 N -0.946 5.946 16 Si 0.983 3.017 17 H -0.290 1.290 18 H -0.273 1.273 19 H -0.283 1.283 20 C 0.132 3.868 21 C 0.092 3.908 22 H 0.089 0.911 23 O -0.568 6.568 24 C -0.060 4.060 25 C -0.119 4.119 26 C -0.115 4.115 27 C 0.109 3.891 28 F -0.132 7.132 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.140 0.860 33 H 0.415 0.585 34 H 0.016 0.984 35 H 0.043 0.957 36 H 0.251 0.749 37 H 0.093 0.907 38 H -0.008 1.008 39 H 0.397 0.603 40 H 0.160 0.840 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.717 -18.850 4.918 23.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.125 4.125 3 C -0.069 4.069 4 C -0.147 4.147 5 C 0.348 3.652 6 O -0.458 6.458 7 N -0.346 5.346 8 C 0.048 3.952 9 H 0.097 0.903 10 C 0.004 3.996 11 N -0.346 5.346 12 C -0.374 4.374 13 H 0.099 0.901 14 C -0.253 4.253 15 N -0.595 5.595 16 Si 0.811 3.189 17 H -0.216 1.216 18 H -0.199 1.199 19 H -0.209 1.209 20 C 0.006 3.994 21 C 0.032 3.968 22 H 0.107 0.893 23 O -0.376 6.376 24 C -0.078 4.078 25 C -0.120 4.120 26 C -0.171 4.171 27 C 0.089 3.911 28 F -0.110 7.110 29 H 0.104 0.896 30 H 0.096 0.904 31 H 0.102 0.898 32 H 0.158 0.842 33 H 0.253 0.747 34 H 0.034 0.966 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.111 0.889 38 H 0.010 0.990 39 H 0.248 0.752 40 H 0.177 0.823 41 H 0.104 0.896 42 H 0.111 0.889 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.600 -18.043 4.774 23.696 hybrid contribution 1.178 0.498 -0.616 1.419 sum -13.422 -17.545 4.158 22.478 Atomic orbital electron populations 1.20814 0.88008 1.04338 1.03905 1.20066 0.98594 0.90867 1.02935 1.21060 0.92464 0.98274 0.95083 1.19839 0.94497 0.92347 1.08004 1.18587 0.82191 0.89172 0.75296 1.90767 1.69111 1.34210 1.51664 1.45635 1.05733 1.09223 1.74045 1.21588 0.91821 0.86596 0.95174 0.90289 1.21678 0.86678 0.96364 0.94874 1.44526 1.12120 1.72332 1.05597 1.19407 0.96759 1.33179 0.88100 0.90130 1.25616 0.97944 1.01716 0.99979 1.69941 1.14491 1.52176 1.22880 0.85089 0.77193 0.78228 0.78414 1.21628 1.19918 1.20907 1.22409 0.99894 0.93543 0.83506 1.23264 0.93770 0.98861 0.80952 0.89298 1.86384 1.35994 1.96405 1.18818 1.21271 1.01190 0.89439 0.95918 1.20106 0.91628 0.97914 1.02379 1.20842 1.00682 0.91574 1.04037 1.17760 0.89884 0.81040 1.02370 1.91473 1.80044 1.45995 1.93518 0.89648 0.90391 0.89754 0.84199 0.74655 0.96628 0.93891 0.93932 0.88928 0.99002 0.75215 0.82285 0.89558 0.88930 0.90758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.57 9.83 71.24 0.70 -0.87 16 2 C -0.12 -2.33 5.88 -19.86 -0.12 -2.45 16 3 C -0.05 -1.12 9.24 22.52 0.21 -0.92 16 4 C -0.14 -3.43 5.87 -20.09 -0.12 -3.55 16 5 C 0.56 17.35 7.77 86.75 0.67 18.02 16 6 O -0.58 -22.76 15.99 -3.93 -0.06 -22.82 16 7 N -0.69 -20.12 5.07 -439.90 -2.23 -22.35 16 8 C 0.15 5.74 3.04 46.18 0.14 5.88 16 9 H 0.08 3.37 7.55 -2.39 -0.02 3.35 16 10 C 0.13 5.67 7.01 86.73 0.61 6.27 16 11 N -0.62 -31.62 3.39 -691.99 -2.35 -33.97 16 12 C -0.25 -13.63 10.27 84.03 0.86 -12.76 16 13 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 14 C -0.06 -3.29 5.49 84.86 0.47 -2.82 16 15 N -0.95 -53.99 10.09 21.65 0.22 -53.77 16 16 Si 0.98 44.51 29.55 68.60 2.03 46.54 16 17 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 18 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 19 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 20 C 0.13 6.28 5.62 86.85 0.49 6.77 16 21 C 0.09 3.28 4.06 31.98 0.13 3.41 16 22 H 0.09 2.74 8.01 -2.39 -0.02 2.72 16 23 O -0.57 -18.27 13.48 -148.98 -2.01 -20.28 16 24 C -0.06 -1.06 9.18 22.51 0.21 -0.86 16 25 C -0.12 -1.97 5.88 -19.86 -0.12 -2.09 16 26 C -0.12 -1.27 9.83 71.24 0.70 -0.57 16 27 C 0.11 2.01 7.19 22.47 0.16 2.18 16 28 F -0.13 -2.38 15.66 44.97 0.70 -1.68 16 29 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.08 0.97 7.63 -2.38 -0.02 0.95 16 31 H 0.08 1.02 8.08 -2.39 -0.02 1.00 16 32 H 0.14 3.26 7.65 -2.91 -0.02 3.24 16 33 H 0.41 8.96 6.59 -92.71 -0.61 8.35 16 34 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.04 1.76 8.03 -2.39 -0.02 1.74 16 36 H 0.25 13.89 8.31 -92.70 -0.77 13.12 16 37 H 0.09 4.80 5.87 -2.39 -0.01 4.78 16 38 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 39 H 0.40 9.48 9.11 -74.06 -0.67 8.81 16 40 H 0.16 2.01 6.40 -2.91 -0.02 2.00 16 41 H 0.09 0.83 8.14 -2.39 -0.02 0.82 16 42 H 0.09 0.75 8.09 -2.39 -0.02 0.73 16 43 H 0.07 0.80 7.63 -2.39 -0.02 0.78 16 Total: -1.00 -71.26 360.06 1.07 -70.19 By element: Atomic # 1 Polarization: 22.74 SS G_CDS: -0.22 Total: 22.51 kcal Atomic # 6 Polarization: 10.63 SS G_CDS: 4.99 Total: 15.63 kcal Atomic # 7 Polarization: -105.73 SS G_CDS: -4.36 Total: -110.09 kcal Atomic # 8 Polarization: -41.03 SS G_CDS: -2.07 Total: -43.10 kcal Atomic # 9 Polarization: -2.38 SS G_CDS: 0.70 Total: -1.68 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -71.26 1.07 -70.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078196709.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.634 kcal (2) G-P(sol) polarization free energy of solvation -71.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds