Wall clock time and date at job start Fri Apr 10 2020 18:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09004 * 110.77686 * 2 1 4 4 C 1.54319 * 110.71776 * 236.76185 * 2 1 3 5 5 N 1.47027 * 107.26796 * 219.44309 * 4 2 1 6 6 C 1.36938 * 125.64720 * 178.98980 * 5 4 2 7 7 H 1.08005 * 120.00095 * 349.93997 * 6 5 4 8 8 C 1.38813 * 120.00201 * 169.94316 * 6 5 4 9 9 N 1.31621 * 119.99670 * 350.41994 * 8 6 5 10 10 Si 1.86795 * 120.00270 * 170.41560 * 8 6 5 11 11 H 1.48501 * 109.46802 * 94.14228 * 10 8 6 12 12 H 1.48500 * 109.47304 * 214.13872 * 10 8 6 13 13 H 1.48494 * 109.47320 * 334.14176 * 10 8 6 14 14 C 1.47424 * 108.70421 * 358.94358 * 5 4 2 15 15 C 1.54904 * 104.83177 * 24.12532 * 14 5 4 16 16 H 1.08999 * 111.03605 * 81.08093 * 15 14 5 17 17 N 1.46503 * 111.00767 * 204.91778 * 15 14 5 18 18 C 1.34776 * 120.00126 * 267.20266 * 17 15 14 19 19 O 1.21288 * 119.99757 * 359.97438 * 18 17 15 20 20 C 1.50691 * 120.00226 * 179.97438 * 18 17 15 21 21 N 1.46499 * 109.47483 * 179.97438 * 20 18 17 22 22 C 1.34583 * 125.75120 * 124.99472 * 21 20 18 23 23 N 1.30869 * 107.63124 * 180.26651 * 22 21 20 24 24 C 1.34555 * 107.26316 * 359.64455 * 23 22 21 25 25 C 1.47868 * 126.04680 * 180.11854 * 24 23 22 26 26 N 1.34773 * 120.00248 * 0.28758 * 25 24 23 27 27 O 1.21557 * 119.99860 * 180.28711 * 25 24 23 28 28 N 1.28845 * 125.74679 * 305.04260 * 21 20 18 29 29 H 1.08995 * 109.46908 * 296.75957 * 1 2 3 30 30 H 1.08995 * 109.46899 * 56.76195 * 1 2 3 31 31 H 1.09005 * 109.46816 * 176.75838 * 1 2 3 32 32 H 1.09003 * 109.88718 * 338.85723 * 4 2 1 33 33 H 1.08994 * 109.88667 * 100.02845 * 4 2 1 34 34 H 0.96993 * 120.00175 * 180.02562 * 9 8 6 35 35 H 1.08998 * 110.36106 * 265.29156 * 14 5 4 36 36 H 1.08996 * 110.36841 * 142.96768 * 14 5 4 37 37 H 0.96999 * 120.00095 * 87.19746 * 17 15 14 38 38 H 1.09006 * 109.47506 * 59.99740 * 20 18 17 39 39 H 1.09003 * 109.47083 * 299.99640 * 20 18 17 40 40 H 1.08004 * 126.18543 * 0.02562 * 22 21 20 41 41 H 0.97007 * 119.99789 * 359.97438 * 26 25 24 42 42 H 0.96997 * 120.00699 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9168 1.0192 0.0000 4 6 2.0760 -0.7912 -1.2073 5 7 3.2446 -1.5507 -0.7390 6 6 4.0045 -2.3968 -1.5018 7 1 3.6725 -2.6775 -2.4905 8 6 5.2014 -2.8936 -1.0044 9 7 5.7004 -2.4107 0.1137 10 14 6.1040 -4.2474 -1.9219 11 1 7.1178 -3.6435 -2.8234 12 1 6.7786 -5.1415 -0.9468 13 1 5.1332 -5.0335 -2.7249 14 6 3.4633 -1.2498 0.6876 15 6 2.0790 -0.7954 1.2138 16 1 1.4449 -1.6532 1.4379 17 7 2.2214 0.0696 2.3875 18 6 2.1873 -0.4628 3.6252 19 8 2.0383 -1.6580 3.7673 20 6 2.3344 0.4270 4.8325 21 7 2.2632 -0.3854 6.0495 22 6 3.1878 -0.4203 7.0269 23 7 2.7714 -1.2638 7.9366 24 6 1.5844 -1.7437 7.5227 25 6 0.7450 -2.7267 8.2408 26 7 1.1510 -3.2202 9.4274 27 8 -0.3112 -3.0896 7.7609 28 7 1.3054 -1.1877 6.3641 29 1 -0.3633 0.4627 0.9176 30 1 -0.3633 0.5633 -0.8595 31 1 -0.3633 -1.0261 -0.0581 32 1 1.3130 -1.4759 -1.5776 33 1 2.3741 -0.1025 -1.9977 34 1 6.5369 -2.7576 0.4612 35 1 4.1931 -0.4479 0.7984 36 1 3.7960 -2.1426 1.2169 37 1 2.3404 1.0256 2.2739 38 1 1.5314 1.1641 4.8407 39 1 3.2963 0.9381 4.7922 40 1 4.1090 0.1430 7.0536 41 1 1.9940 -2.9308 9.8102 42 1 0.6006 -3.8653 9.8983 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001079730700.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:08 Heat of formation + Delta-G solvation = 17.995193 kcal Electronic energy + Delta-G solvation = -27022.455525 eV Core-core repulsion = 23039.186580 eV Total energy + Delta-G solvation = -3983.268945 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.154 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.48302 -41.03489 -40.31056 -39.20387 -35.74271 -35.59623 -34.64320 -34.33446 -32.82619 -32.21341 -30.39198 -28.81832 -27.39262 -25.78923 -25.11596 -23.54843 -22.44940 -21.78307 -21.64888 -21.04166 -19.31141 -18.91906 -18.64358 -18.24976 -17.60151 -17.27244 -16.90555 -16.84923 -16.29768 -16.01467 -15.71499 -15.58993 -15.13767 -15.01426 -14.47437 -14.46620 -14.28478 -14.03953 -13.66923 -13.30749 -13.08433 -12.94359 -12.87233 -12.66431 -12.25370 -12.08660 -11.88854 -11.72346 -11.67900 -11.60197 -11.54121 -11.47412 -11.14348 -10.86972 -10.73495 -10.50229 -10.04596 -8.90005 -7.92795 -5.27384 0.30854 0.99290 1.20269 1.41277 1.44447 1.51736 1.53113 2.02103 2.22801 2.35457 2.46571 3.18476 3.27469 3.42382 3.62290 3.67502 3.82656 3.92632 4.01121 4.06111 4.10347 4.19596 4.50577 4.59248 4.63843 4.85249 4.88824 5.01960 5.07631 5.18588 5.24837 5.27774 5.40246 5.47725 5.52342 5.56748 5.71349 5.73796 6.15520 6.19355 6.51828 6.97269 7.02784 7.16821 7.24260 7.71995 8.36306 9.18248 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013611 B = 0.003085 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.661560 B = 9072.763327 C =10047.872585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.089 4.089 3 H 0.108 0.892 4 C 0.131 3.869 5 N -0.627 5.627 6 C -0.246 4.246 7 H 0.080 0.920 8 C -0.064 4.064 9 N -0.944 5.944 10 Si 0.975 3.025 11 H -0.279 1.279 12 H -0.297 1.297 13 H -0.271 1.271 14 C 0.183 3.817 15 C 0.137 3.863 16 H 0.060 0.940 17 N -0.690 5.690 18 C 0.490 3.510 19 O -0.576 6.576 20 C 0.105 3.895 21 N -0.292 5.292 22 C 0.212 3.788 23 N -0.498 5.498 24 C 0.105 3.895 25 C 0.617 3.383 26 N -0.805 5.805 27 O -0.572 6.572 28 N -0.265 5.265 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.039 0.961 32 H 0.027 0.973 33 H 0.034 0.966 34 H 0.246 0.754 35 H 0.014 0.986 36 H 0.013 0.987 37 H 0.423 0.577 38 H 0.168 0.832 39 H 0.199 0.801 40 H 0.285 0.715 41 H 0.423 0.577 42 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.530 14.348 15.362 21.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.108 4.108 3 H 0.126 0.874 4 C 0.006 3.994 5 N -0.354 5.354 6 C -0.375 4.375 7 H 0.098 0.902 8 C -0.257 4.257 9 N -0.593 5.593 10 Si 0.803 3.197 11 H -0.206 1.206 12 H -0.224 1.224 13 H -0.195 1.195 14 C 0.056 3.944 15 C 0.030 3.970 16 H 0.079 0.921 17 N -0.343 5.343 18 C 0.275 3.725 19 O -0.454 6.454 20 C -0.018 4.018 21 N -0.088 5.088 22 C -0.082 4.082 23 N -0.224 5.224 24 C -0.174 4.174 25 C 0.398 3.602 26 N -0.371 5.371 27 O -0.449 6.449 28 N -0.105 5.105 29 H 0.090 0.910 30 H 0.097 0.903 31 H 0.058 0.942 32 H 0.045 0.955 33 H 0.052 0.948 34 H 0.056 0.944 35 H 0.032 0.968 36 H 0.032 0.968 37 H 0.262 0.738 38 H 0.186 0.814 39 H 0.216 0.784 40 H 0.300 0.700 41 H 0.255 0.745 42 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -6.538 13.031 14.971 20.897 hybrid contribution 1.250 -0.893 -0.496 1.615 sum -5.287 12.138 14.476 19.617 Atomic orbital electron populations 1.21704 0.92272 1.01671 1.03188 1.22356 0.97146 0.99358 0.91946 0.87432 1.21630 0.88585 0.93273 0.95936 1.44662 1.32187 1.51325 1.07204 1.19399 0.99911 1.19409 0.98770 0.90171 1.25661 0.98116 1.02837 0.99132 1.70135 1.20672 1.44874 1.23585 0.85123 0.78427 0.78836 0.77326 1.20580 1.22352 1.19545 1.21357 0.92156 0.96765 0.84073 1.22103 0.96897 0.93169 0.84855 0.92132 1.45458 1.73026 1.11916 1.03888 1.21211 0.76417 0.88992 0.85841 1.90862 1.49710 1.18316 1.86503 1.22393 1.12275 0.90850 0.76247 1.47152 1.13761 1.29690 1.18153 1.27623 0.98285 0.98356 0.83983 1.71167 1.09176 1.12534 1.29497 1.23690 0.95623 1.04643 0.93451 1.16500 0.83048 0.79072 0.81545 1.43208 1.27299 1.46584 1.20006 1.90848 1.24734 1.61033 1.68252 1.74342 1.15604 1.06020 1.14507 0.90995 0.90275 0.94213 0.95533 0.94804 0.94444 0.96833 0.96811 0.73819 0.81437 0.78358 0.69989 0.74513 0.74444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 9.16 71.99 0.66 -2.37 16 2 C -0.09 -2.58 3.20 -9.60 -0.03 -2.61 16 3 H 0.11 2.49 8.00 -2.38 -0.02 2.47 16 4 C 0.13 5.14 6.84 86.73 0.59 5.73 16 5 N -0.63 -32.41 3.39 -692.00 -2.35 -34.76 16 6 C -0.25 -14.05 10.24 84.03 0.86 -13.19 16 7 H 0.08 4.39 7.85 -2.91 -0.02 4.37 16 8 C -0.06 -3.71 5.40 84.86 0.46 -3.25 16 9 N -0.94 -57.59 10.68 21.65 0.23 -57.36 16 10 Si 0.97 46.80 29.56 68.60 2.03 48.83 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 12 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 13 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 14 C 0.18 8.97 5.11 86.85 0.44 9.41 16 15 C 0.14 4.92 2.87 46.38 0.13 5.06 16 16 H 0.06 2.63 7.44 -2.39 -0.02 2.61 16 17 N -0.69 -17.11 5.20 -435.97 -2.27 -19.38 16 18 C 0.49 13.51 7.84 87.65 0.69 14.20 16 19 O -0.58 -24.62 15.31 -3.05 -0.05 -24.67 16 20 C 0.11 1.37 6.93 85.63 0.59 1.96 16 21 N -0.29 -6.35 3.18 -355.65 -1.13 -7.48 16 22 C 0.21 3.50 12.57 180.30 2.27 5.76 16 23 N -0.50 -11.52 11.09 -193.03 -2.14 -13.66 16 24 C 0.10 3.18 7.96 137.12 1.09 4.27 16 25 C 0.62 18.52 8.10 86.79 0.70 19.22 16 26 N -0.80 -14.55 8.87 -175.59 -1.56 -16.10 16 27 O -0.57 -22.20 17.92 -3.89 -0.07 -22.27 16 28 N -0.26 -8.60 11.04 -52.43 -0.58 -9.18 16 29 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.04 1.07 8.06 -2.38 -0.02 1.05 16 32 H 0.03 1.05 7.77 -2.39 -0.02 1.03 16 33 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 35 H 0.01 0.70 8.07 -2.39 -0.02 0.68 16 36 H 0.01 0.81 6.93 -2.39 -0.02 0.79 16 37 H 0.42 6.02 8.57 -92.71 -0.79 5.22 16 38 H 0.17 0.90 8.14 -2.38 -0.02 0.88 16 39 H 0.20 0.25 8.06 -2.39 -0.02 0.23 16 40 H 0.28 0.84 8.06 -2.91 -0.02 0.81 16 41 H 0.42 5.70 8.54 -92.70 -0.79 4.91 16 42 H 0.42 5.63 8.93 -92.71 -0.83 4.81 16 Total: -1.00 -100.92 360.95 -0.74 -101.66 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -1.32 Total: 10.17 kcal Atomic # 6 Polarization: 35.74 SS G_CDS: 8.46 Total: 44.20 kcal Atomic # 7 Polarization: -148.13 SS G_CDS: -9.79 Total: -157.92 kcal Atomic # 8 Polarization: -46.82 SS G_CDS: -0.12 Total: -46.94 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 2.03 Total: 48.83 kcal Total: -100.92 -0.74 -101.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079730700.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.656 kcal (2) G-P(sol) polarization free energy of solvation -100.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds