Wall clock time and date at job start Fri Apr 10 2020 18:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35734 * 116.99674 * 2 1 4 4 C 1.39445 * 120.81064 * 180.02562 * 3 2 1 5 5 N 1.31950 * 119.08836 * 180.02562 * 4 3 2 6 6 C 1.32544 * 120.83574 * 0.02562 * 5 4 3 7 7 C 1.48289 * 119.11386 * 179.97438 * 6 5 4 8 8 O 1.21507 * 119.99897 * 0.02562 * 7 6 5 9 9 N 1.34768 * 120.00329 * 179.97438 * 7 6 5 10 10 C 1.46502 * 120.00332 * 180.02562 * 9 7 6 11 11 H 1.08993 * 110.91451 * 37.45179 * 10 9 7 12 12 C 1.54912 * 111.00133 * 273.54537 * 10 9 7 13 13 N 1.47428 * 104.83095 * 204.91453 * 12 10 9 14 14 C 1.36931 * 125.65100 * 204.09420 * 13 12 10 15 15 H 1.08002 * 120.00098 * 359.97438 * 14 13 12 16 16 C 1.38812 * 120.00429 * 179.97438 * 14 13 12 17 17 N 1.31624 * 119.99535 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00484 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47326 * 270.00576 * 18 16 14 20 20 H 1.48506 * 109.46545 * 30.00326 * 18 16 14 21 21 H 1.48498 * 109.47210 * 150.00037 * 18 16 14 22 22 C 1.47032 * 108.70123 * 24.35753 * 13 12 10 23 23 C 1.54327 * 107.26586 * 358.58848 * 22 13 12 24 24 H 1.08999 * 110.67460 * 96.51874 * 23 22 13 25 25 O 1.42897 * 110.84974 * 219.67324 * 23 22 13 26 26 C 1.42906 * 114.00095 * 263.68977 * 25 23 22 27 27 N 1.32541 * 121.77205 * 0.27240 * 6 5 4 28 28 C 1.31957 * 120.83900 * 359.44347 * 27 6 5 29 29 H 1.08997 * 109.47800 * 60.00341 * 1 2 3 30 30 H 1.09005 * 109.46983 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47421 * 299.99646 * 1 2 3 32 32 H 1.08007 * 120.45417 * 0.04249 * 4 3 2 33 33 H 0.96999 * 120.00131 * 0.02562 * 9 7 6 34 34 H 1.08997 * 110.36341 * 86.07996 * 12 10 9 35 35 H 1.08994 * 110.36879 * 323.75428 * 12 10 9 36 36 H 0.97005 * 119.99717 * 179.97438 * 17 16 14 37 37 H 1.09006 * 109.87698 * 118.13072 * 22 13 12 38 38 H 1.08994 * 109.88039 * 239.29140 * 22 13 12 39 39 H 1.08997 * 109.47292 * 179.97438 * 26 25 23 40 40 H 1.08997 * 109.46732 * 299.99866 * 26 25 23 41 41 H 1.09001 * 109.46950 * 59.99729 * 26 25 23 42 42 H 1.08001 * 120.45879 * 180.27119 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0451 1.2094 0.0000 4 6 3.4364 1.3022 -0.0005 5 7 3.9998 2.4954 0.0000 6 6 3.2608 3.5956 0.0015 7 6 3.9339 4.9169 0.0027 8 8 5.1473 4.9806 0.0017 9 7 3.1999 6.0472 0.0037 10 6 3.8649 7.3526 0.0043 11 1 4.7614 7.3328 -0.6153 12 6 4.1972 7.8058 1.4479 13 7 4.2663 9.2766 1.3752 14 6 4.9602 10.0864 2.2341 15 1 5.5195 9.6542 3.0507 16 6 4.9447 11.4629 2.0554 17 7 4.2627 11.9897 1.0606 18 14 5.8907 12.5677 3.2276 19 1 5.0124 12.9545 4.3608 20 1 7.0761 11.8390 3.7465 21 1 6.3358 13.7877 2.5074 22 6 3.4616 9.7304 0.2314 23 6 2.8942 8.4715 -0.4577 24 1 1.8801 8.2685 -0.1137 25 8 2.9252 8.6123 -1.8794 26 6 1.6921 9.0602 -2.4462 27 7 1.9363 3.5467 0.0080 28 6 1.3021 2.3895 0.0021 29 1 -0.3634 0.5137 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5137 0.8900 32 1 4.0446 0.4096 -0.0016 33 1 2.2312 5.9965 0.0041 34 1 5.1570 7.3960 1.7625 35 1 3.4086 7.4964 2.1336 36 1 4.2516 12.9517 0.9359 37 1 2.6459 10.3639 0.5801 38 1 4.0895 10.2825 -0.4679 39 1 1.7979 9.1419 -3.5279 40 1 0.9034 8.3457 -2.2108 41 1 1.4348 10.0350 -2.0319 42 1 0.2226 2.3568 0.0030 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001081927359.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:18 Heat of formation + Delta-G solvation = -18.446757 kcal Electronic energy + Delta-G solvation = -26971.933971 eV Core-core repulsion = 22954.792033 eV Total energy + Delta-G solvation = -4017.141937 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.76349 -39.74558 -38.89688 -37.91670 -35.87536 -34.56240 -33.78986 -31.98690 -31.37361 -28.88472 -28.33923 -27.16197 -26.09112 -25.27486 -24.75667 -23.87290 -21.39490 -20.49400 -20.04707 -18.83972 -18.53313 -18.31590 -16.92142 -16.67185 -16.44584 -15.62508 -15.51508 -15.35770 -15.13209 -14.70675 -14.42712 -14.22505 -14.10792 -13.96210 -13.72278 -13.20480 -12.91702 -12.74246 -12.29519 -12.12032 -11.88583 -11.83401 -11.54620 -11.37718 -11.19412 -10.98559 -10.78538 -10.72804 -10.15761 -10.00947 -9.94028 -9.75456 -9.65720 -9.22520 -9.08358 -8.75280 -8.56216 -6.85986 -5.70419 -3.05211 0.18742 0.58864 2.41900 2.59744 2.85392 3.43059 3.48211 3.50576 3.60460 3.63249 3.73072 4.11536 4.16965 4.22216 4.52579 4.52904 4.54849 4.77881 4.90232 5.13730 5.18880 5.41925 5.51371 5.57147 5.60595 5.66704 5.73721 5.86995 5.94603 6.07280 6.18569 6.24113 6.51701 6.58636 6.66695 6.85370 7.27158 7.41223 7.50740 7.73296 7.76867 7.89127 8.22478 8.31236 9.20543 9.80473 10.43652 11.41101 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.020089 B = 0.002765 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.470222 B =10124.347303 C =10854.289007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.298 6.298 3 C 0.040 3.960 4 C 0.124 3.876 5 N -0.427 5.427 6 C 0.249 3.751 7 C 0.585 3.415 8 O -0.501 6.501 9 N -0.693 5.693 10 C 0.133 3.867 11 H 0.108 0.892 12 C 0.130 3.870 13 N -0.600 5.600 14 C -0.227 4.227 15 H 0.081 0.919 16 C -0.008 4.008 17 N -0.923 5.923 18 Si 0.915 3.085 19 H -0.289 1.289 20 H -0.280 1.280 21 H -0.290 1.290 22 C 0.166 3.834 23 C 0.057 3.943 24 H 0.065 0.935 25 O -0.378 6.378 26 C 0.034 3.966 27 N -0.456 5.456 28 C 0.064 3.936 29 H 0.062 0.938 30 H 0.109 0.891 31 H 0.062 0.938 32 H 0.184 0.816 33 H 0.406 0.594 34 H 0.053 0.947 35 H 0.024 0.976 36 H 0.253 0.747 37 H 0.049 0.951 38 H 0.064 0.936 39 H 0.079 0.921 40 H 0.034 0.966 41 H 0.045 0.955 42 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.071 -22.316 -4.985 26.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.208 6.208 3 C -0.012 4.012 4 C -0.045 4.045 5 N -0.141 5.141 6 C -0.020 4.020 7 C 0.366 3.634 8 O -0.373 6.373 9 N -0.345 5.345 10 C 0.028 3.972 11 H 0.125 0.875 12 C 0.003 3.997 13 N -0.328 5.328 14 C -0.355 4.355 15 H 0.099 0.901 16 C -0.204 4.204 17 N -0.571 5.571 18 Si 0.745 3.255 19 H -0.216 1.216 20 H -0.206 1.206 21 H -0.216 1.216 22 C 0.040 3.960 23 C -0.002 4.002 24 H 0.083 0.917 25 O -0.296 6.296 26 C -0.063 4.063 27 N -0.173 5.173 28 C -0.104 4.104 29 H 0.081 0.919 30 H 0.127 0.873 31 H 0.081 0.919 32 H 0.201 0.799 33 H 0.242 0.758 34 H 0.072 0.928 35 H 0.042 0.958 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.082 0.918 39 H 0.097 0.903 40 H 0.052 0.948 41 H 0.064 0.936 42 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -11.407 -21.343 -5.074 24.726 hybrid contribution -1.208 -0.162 0.682 1.397 sum -12.615 -21.505 -4.391 25.316 Atomic orbital electron populations 1.23263 0.77292 1.05085 1.02007 1.86093 1.22241 1.24908 1.87599 1.21233 0.95273 0.86868 0.97795 1.22925 0.89253 0.96370 0.95996 1.68302 1.39741 0.97534 1.08532 1.22883 0.85943 0.94450 0.98676 1.17053 0.86394 0.81719 0.78257 1.90845 1.12558 1.85993 1.47865 1.45721 1.10523 1.04948 1.73299 1.22500 0.96554 0.79047 0.99121 0.87456 1.21840 0.99342 0.86360 0.92192 1.44260 1.57317 0.99183 1.32024 1.19082 1.23079 0.87543 1.05768 0.90104 1.24819 1.00408 0.96605 0.98579 1.69941 1.45121 1.10696 1.31297 0.86070 0.79392 0.80219 0.79806 1.21632 1.20575 1.21647 1.21567 0.95245 0.89988 0.89184 1.23839 0.97874 0.97351 0.81152 0.91738 1.87909 1.33871 1.87551 1.20239 1.22713 0.86398 0.98420 0.98726 1.68151 1.10341 1.29034 1.09789 1.23447 1.01329 0.86643 0.98955 0.91939 0.87287 0.91916 0.79881 0.75835 0.92846 0.95803 0.93679 0.93289 0.91803 0.90255 0.94787 0.93616 0.80597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.05 9.84 101.05 0.99 1.04 16 2 O -0.30 -1.93 10.51 -18.91 -0.20 -2.13 16 3 C 0.04 0.33 6.75 -38.68 -0.26 0.07 16 4 C 0.12 1.23 11.27 -17.05 -0.19 1.04 16 5 N -0.43 -6.00 10.11 -11.03 -0.11 -6.12 16 6 C 0.25 3.66 7.59 -157.04 -1.19 2.47 16 7 C 0.59 10.24 7.84 -12.13 -0.10 10.14 16 8 O -0.50 -10.55 16.60 5.36 0.09 -10.47 16 9 N -0.69 -11.34 5.22 -52.52 -0.27 -11.61 16 10 C 0.13 2.59 3.04 -65.77 -0.20 2.39 16 11 H 0.11 2.34 7.73 -51.93 -0.40 1.94 16 12 C 0.13 2.87 6.93 -2.53 -0.02 2.85 16 13 N -0.60 -15.68 3.39 -170.06 -0.58 -16.26 16 14 C -0.23 -6.43 10.28 -15.06 -0.15 -6.58 16 15 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 16 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 17 N -0.92 -27.19 10.31 55.49 0.57 -26.62 16 18 Si 0.91 22.40 29.55 -169.99 -5.02 17.37 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 22 C 0.17 4.06 5.16 -3.06 -0.02 4.04 16 23 C 0.06 1.10 3.06 -24.89 -0.08 1.02 16 24 H 0.06 1.10 7.67 -51.93 -0.40 0.70 16 25 O -0.38 -7.06 10.44 -35.23 -0.37 -7.42 16 26 C 0.03 0.49 10.85 101.05 1.10 1.58 16 27 N -0.46 -5.43 9.55 -11.03 -0.11 -5.54 16 28 C 0.06 0.55 10.31 -17.05 -0.18 0.37 16 29 H 0.06 0.11 7.71 -51.93 -0.40 -0.29 16 30 H 0.11 0.10 8.14 -51.93 -0.42 -0.32 16 31 H 0.06 0.12 7.70 -51.93 -0.40 -0.28 16 32 H 0.18 1.24 8.06 -52.48 -0.42 0.82 16 33 H 0.41 5.68 7.81 -40.82 -0.32 5.36 16 34 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 37 H 0.05 1.29 7.52 -51.93 -0.39 0.90 16 38 H 0.06 1.77 7.28 -51.93 -0.38 1.40 16 39 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.03 0.41 8.11 -51.93 -0.42 -0.01 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.18 0.83 6.47 -52.49 -0.34 0.49 16 LS Contribution 358.32 15.07 5.40 5.40 Total: -1.00 -35.39 358.32 -6.51 -41.90 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -5.53 Total: 1.37 kcal Atomic # 6 Polarization: 20.50 SS G_CDS: -0.39 Total: 20.12 kcal Atomic # 7 Polarization: -65.65 SS G_CDS: -0.50 Total: -66.14 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: -0.48 Total: -20.02 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.39 -6.51 -41.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081927359.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.458 kcal (2) G-P(sol) polarization free energy of solvation -35.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds