Wall clock time and date at job start Fri Apr 10 2020 18:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35734 * 116.99674 * 2 1 4 4 C 1.39445 * 120.81064 * 180.02562 * 3 2 1 5 5 N 1.31950 * 119.08836 * 180.02562 * 4 3 2 6 6 C 1.32544 * 120.83574 * 0.02562 * 5 4 3 7 7 C 1.48289 * 119.11386 * 179.97438 * 6 5 4 8 8 O 1.21507 * 119.99897 * 0.02562 * 7 6 5 9 9 N 1.34768 * 120.00329 * 179.97438 * 7 6 5 10 10 C 1.46502 * 120.00332 * 180.02562 * 9 7 6 11 11 H 1.08993 * 110.91451 * 37.45179 * 10 9 7 12 12 C 1.54912 * 111.00133 * 273.54537 * 10 9 7 13 13 N 1.47428 * 104.83095 * 204.91453 * 12 10 9 14 14 C 1.36931 * 125.65100 * 204.09420 * 13 12 10 15 15 H 1.08002 * 120.00098 * 359.97438 * 14 13 12 16 16 C 1.38812 * 120.00429 * 179.97438 * 14 13 12 17 17 N 1.31624 * 119.99535 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00484 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47326 * 270.00576 * 18 16 14 20 20 H 1.48506 * 109.46545 * 30.00326 * 18 16 14 21 21 H 1.48498 * 109.47210 * 150.00037 * 18 16 14 22 22 C 1.47032 * 108.70123 * 24.35753 * 13 12 10 23 23 C 1.54327 * 107.26586 * 358.58848 * 22 13 12 24 24 H 1.08999 * 110.67460 * 96.51874 * 23 22 13 25 25 O 1.42897 * 110.84974 * 219.67324 * 23 22 13 26 26 C 1.42906 * 114.00095 * 263.68977 * 25 23 22 27 27 N 1.32541 * 121.77205 * 0.27240 * 6 5 4 28 28 C 1.31957 * 120.83900 * 359.44347 * 27 6 5 29 29 H 1.08997 * 109.47800 * 60.00341 * 1 2 3 30 30 H 1.09005 * 109.46983 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47421 * 299.99646 * 1 2 3 32 32 H 1.08007 * 120.45417 * 0.04249 * 4 3 2 33 33 H 0.96999 * 120.00131 * 0.02562 * 9 7 6 34 34 H 1.08997 * 110.36341 * 86.07996 * 12 10 9 35 35 H 1.08994 * 110.36879 * 323.75428 * 12 10 9 36 36 H 0.97005 * 119.99717 * 179.97438 * 17 16 14 37 37 H 1.09006 * 109.87698 * 118.13072 * 22 13 12 38 38 H 1.08994 * 109.88039 * 239.29140 * 22 13 12 39 39 H 1.08997 * 109.47292 * 179.97438 * 26 25 23 40 40 H 1.08997 * 109.46732 * 299.99866 * 26 25 23 41 41 H 1.09001 * 109.46950 * 59.99729 * 26 25 23 42 42 H 1.08001 * 120.45879 * 180.27119 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0451 1.2094 0.0000 4 6 3.4364 1.3022 -0.0005 5 7 3.9998 2.4954 0.0000 6 6 3.2608 3.5956 0.0015 7 6 3.9339 4.9169 0.0027 8 8 5.1473 4.9806 0.0017 9 7 3.1999 6.0472 0.0037 10 6 3.8649 7.3526 0.0043 11 1 4.7614 7.3328 -0.6153 12 6 4.1972 7.8058 1.4479 13 7 4.2663 9.2766 1.3752 14 6 4.9602 10.0864 2.2341 15 1 5.5195 9.6542 3.0507 16 6 4.9447 11.4629 2.0554 17 7 4.2627 11.9897 1.0606 18 14 5.8907 12.5677 3.2276 19 1 5.0124 12.9545 4.3608 20 1 7.0761 11.8390 3.7465 21 1 6.3358 13.7877 2.5074 22 6 3.4616 9.7304 0.2314 23 6 2.8942 8.4715 -0.4577 24 1 1.8801 8.2685 -0.1137 25 8 2.9252 8.6123 -1.8794 26 6 1.6921 9.0602 -2.4462 27 7 1.9363 3.5467 0.0080 28 6 1.3021 2.3895 0.0021 29 1 -0.3634 0.5137 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5137 0.8900 32 1 4.0446 0.4096 -0.0016 33 1 2.2312 5.9965 0.0041 34 1 5.1570 7.3960 1.7625 35 1 3.4086 7.4964 2.1336 36 1 4.2516 12.9517 0.9359 37 1 2.6459 10.3639 0.5801 38 1 4.0895 10.2825 -0.4679 39 1 1.7979 9.1419 -3.5279 40 1 0.9034 8.3457 -2.2108 41 1 1.4348 10.0350 -2.0319 42 1 0.2226 2.3568 0.0030 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001081927359.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:17 Heat of formation + Delta-G solvation = -47.083939 kcal Electronic energy + Delta-G solvation = -26973.175772 eV Core-core repulsion = 22954.792033 eV Total energy + Delta-G solvation = -4018.383739 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.58257 -41.01971 -39.87004 -39.23579 -37.51175 -35.86944 -34.98973 -33.72328 -32.39538 -30.58174 -29.18382 -28.50721 -27.51920 -26.47030 -25.83674 -25.12212 -22.76577 -22.17856 -21.70242 -19.82898 -19.29601 -19.24699 -18.77844 -17.92958 -17.26309 -17.21894 -16.69722 -16.46002 -16.33374 -15.82556 -15.76078 -15.62120 -15.19844 -15.11512 -14.97545 -14.66684 -14.44617 -14.06451 -13.62069 -13.45315 -13.23771 -12.99123 -12.75992 -12.58444 -12.54719 -12.44891 -12.31574 -12.23018 -12.08088 -11.86567 -11.65866 -11.38585 -10.76978 -10.61627 -10.47816 -10.24282 -9.84424 -8.97170 -7.87016 -5.25236 -0.68833 -0.13170 1.45509 1.47402 1.48924 1.54827 1.58514 1.99114 2.46261 2.64711 2.71710 2.77104 3.04420 3.22706 3.32829 3.48581 3.62782 3.77269 3.89081 3.90540 4.08035 4.33087 4.34487 4.41093 4.43730 4.56735 4.60402 4.66109 4.79000 4.81784 4.86241 4.88637 4.92329 5.27634 5.35766 5.41931 5.56033 5.66003 5.98636 6.13431 6.25332 6.31034 6.75552 7.01363 7.05549 7.69311 8.32163 9.22673 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.020089 B = 0.002765 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.470222 B =10124.347303 C =10854.289007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 O -0.300 6.300 3 C 0.067 3.933 4 C 0.110 3.890 5 N -0.459 5.459 6 C 0.220 3.780 7 C 0.585 3.415 8 O -0.549 6.549 9 N -0.678 5.678 10 C 0.150 3.850 11 H 0.080 0.920 12 C 0.132 3.868 13 N -0.621 5.621 14 C -0.247 4.247 15 H 0.082 0.918 16 C -0.062 4.062 17 N -0.949 5.949 18 Si 0.983 3.017 19 H -0.281 1.281 20 H -0.272 1.272 21 H -0.292 1.292 22 C 0.176 3.824 23 C 0.079 3.921 24 H 0.098 0.902 25 O -0.397 6.397 26 C 0.025 3.975 27 N -0.457 5.457 28 C 0.066 3.934 29 H 0.078 0.922 30 H 0.129 0.871 31 H 0.077 0.923 32 H 0.209 0.791 33 H 0.421 0.579 34 H 0.037 0.963 35 H 0.041 0.959 36 H 0.249 0.751 37 H 0.026 0.974 38 H 0.021 0.979 39 H 0.101 0.899 40 H 0.064 0.936 41 H 0.037 0.963 42 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.783 -24.791 -4.894 29.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.209 6.209 3 C 0.015 3.985 4 C -0.058 4.058 5 N -0.175 5.175 6 C -0.048 4.048 7 C 0.368 3.632 8 O -0.424 6.424 9 N -0.331 5.331 10 C 0.043 3.957 11 H 0.098 0.902 12 C 0.005 3.995 13 N -0.349 5.349 14 C -0.375 4.375 15 H 0.100 0.900 16 C -0.255 4.255 17 N -0.597 5.597 18 Si 0.810 3.190 19 H -0.208 1.208 20 H -0.197 1.197 21 H -0.219 1.219 22 C 0.050 3.950 23 C 0.020 3.980 24 H 0.116 0.884 25 O -0.316 6.316 26 C -0.070 4.070 27 N -0.174 5.174 28 C -0.103 4.103 29 H 0.096 0.904 30 H 0.147 0.853 31 H 0.095 0.905 32 H 0.225 0.775 33 H 0.259 0.741 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.044 0.956 38 H 0.039 0.961 39 H 0.119 0.881 40 H 0.083 0.917 41 H 0.056 0.944 42 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -14.176 -23.872 -4.987 28.208 hybrid contribution -0.524 0.370 0.613 0.888 sum -14.700 -23.502 -4.374 28.063 Atomic orbital electron populations 1.23686 0.74823 1.07051 1.03453 1.86125 1.24664 1.23670 1.86456 1.21182 0.94788 0.87682 0.94878 1.23324 0.90730 0.95753 0.96011 1.68170 1.41125 0.98623 1.09543 1.22062 0.86979 0.93035 1.02732 1.17512 0.85973 0.82961 0.76759 1.90806 1.14689 1.86941 1.49993 1.45426 1.11042 1.03554 1.73064 1.21969 0.96075 0.80819 0.96814 0.90219 1.21907 0.99077 0.84306 0.94226 1.44518 1.57399 1.00831 1.32110 1.19443 1.23412 0.88372 1.06312 0.89972 1.25683 1.01567 0.97922 1.00350 1.70158 1.46249 1.10555 1.32752 0.85023 0.78272 0.77915 0.77764 1.20758 1.19690 1.21883 1.21300 0.93526 0.91988 0.88175 1.23469 0.98798 0.94156 0.81616 0.88424 1.87893 1.36694 1.87625 1.19362 1.23011 0.85501 0.98770 0.99747 1.68090 1.08892 1.30710 1.09754 1.24122 1.03030 0.85533 0.97572 0.90377 0.85295 0.90478 0.77466 0.74074 0.94423 0.94089 0.94135 0.95625 0.96093 0.88078 0.91724 0.94384 0.76411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.00 9.84 113.37 1.12 1.12 16 2 O -0.30 -2.69 10.51 -90.58 -0.95 -3.64 16 3 C 0.07 0.91 6.75 22.85 0.15 1.06 16 4 C 0.11 2.01 11.27 84.97 0.96 2.97 16 5 N -0.46 -12.82 10.11 -188.81 -1.91 -14.73 16 6 C 0.22 6.36 7.59 137.56 1.04 7.40 16 7 C 0.58 20.88 7.84 86.92 0.68 21.56 16 8 O -0.55 -24.29 16.60 -3.74 -0.06 -24.35 16 9 N -0.68 -22.05 5.22 -438.39 -2.29 -24.34 16 10 C 0.15 5.97 3.04 46.39 0.14 6.11 16 11 H 0.08 3.66 7.73 -2.39 -0.02 3.64 16 12 C 0.13 5.96 6.93 86.86 0.60 6.56 16 13 N -0.62 -33.60 3.39 -691.96 -2.35 -35.95 16 14 C -0.25 -14.41 10.28 84.03 0.86 -13.55 16 15 H 0.08 4.63 7.83 -2.91 -0.02 4.60 16 16 C -0.06 -3.61 5.49 84.86 0.47 -3.15 16 17 N -0.95 -57.80 10.31 21.65 0.22 -57.58 16 18 Si 0.98 46.89 29.55 68.60 2.03 48.92 16 19 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 20 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 21 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 22 C 0.18 8.96 5.16 86.73 0.45 9.40 16 23 C 0.08 3.05 3.06 31.79 0.10 3.14 16 24 H 0.10 3.13 7.67 -2.39 -0.02 3.11 16 25 O -0.40 -14.73 10.44 -148.98 -1.55 -16.29 16 26 C 0.03 0.68 10.85 113.37 1.23 1.91 16 27 N -0.46 -9.91 9.55 -188.81 -1.80 -11.71 16 28 C 0.07 0.88 10.31 84.97 0.88 1.75 16 29 H 0.08 -0.12 7.71 -2.39 -0.02 -0.14 16 30 H 0.13 -0.35 8.14 -2.38 -0.02 -0.36 16 31 H 0.08 -0.10 7.70 -2.39 -0.02 -0.12 16 32 H 0.21 2.44 8.06 -2.91 -0.02 2.41 16 33 H 0.42 11.08 7.81 -92.71 -0.72 10.36 16 34 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.25 14.69 8.31 -92.70 -0.77 13.92 16 37 H 0.03 1.40 7.52 -2.38 -0.02 1.38 16 38 H 0.02 1.23 7.28 -2.39 -0.02 1.21 16 39 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.06 1.35 8.11 -2.39 -0.02 1.33 16 41 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.22 0.89 6.47 -2.91 -0.02 0.87 16 Total: -1.00 -82.01 358.32 0.34 -81.67 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: 0.34 Total: 11.71 kcal Atomic # 6 Polarization: 37.61 SS G_CDS: 8.67 Total: 46.29 kcal Atomic # 7 Polarization: -136.18 SS G_CDS: -8.13 Total: -144.31 kcal Atomic # 8 Polarization: -41.71 SS G_CDS: -2.57 Total: -44.28 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.92 kcal Total: -82.01 0.34 -81.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081927359.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.582 kcal (2) G-P(sol) polarization free energy of solvation -82.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds