Wall clock time and date at job start Fri Apr 10 2020 18:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42893 * 113.99673 * 2 1 4 4 H 1.09000 * 110.78564 * 31.78938 * 3 2 1 5 5 C 1.54325 * 110.72271 * 268.54262 * 3 2 1 6 6 N 1.47018 * 107.40412 * 219.52456 * 5 3 2 7 7 C 1.36936 * 125.64999 * 178.82784 * 6 5 3 8 8 H 1.08004 * 120.00405 * 180.02562 * 7 6 5 9 9 C 1.38812 * 120.00093 * 0.02562 * 7 6 5 10 10 N 1.31626 * 119.99909 * 0.02562 * 9 7 6 11 11 Si 1.86793 * 120.00506 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.46953 * 90.00082 * 11 9 7 13 13 H 1.48500 * 109.47552 * 210.00252 * 11 9 7 14 14 H 1.48501 * 109.47075 * 330.00551 * 11 9 7 15 15 C 1.47426 * 108.70517 * 358.86539 * 6 5 3 16 16 C 1.54914 * 104.82992 * 24.12623 * 15 6 5 17 17 H 1.09000 * 111.00339 * 81.07133 * 16 15 6 18 18 N 1.46502 * 111.00105 * 204.88119 * 16 15 6 19 19 C 1.34783 * 119.99989 * 273.54475 * 18 16 15 20 20 O 1.21283 * 119.99981 * 0.02562 * 19 18 16 21 21 C 1.50695 * 120.00227 * 180.02562 * 19 18 16 22 22 C 1.50695 * 109.47293 * 179.97438 * 21 19 18 23 23 C 1.38271 * 119.98423 * 90.00062 * 22 21 19 24 24 C 1.38223 * 120.05117 * 180.02562 * 23 22 21 25 25 C 1.38216 * 120.02600 * 359.95406 * 24 23 22 26 26 C 1.38440 * 119.97343 * 0.02619 * 25 24 23 27 27 F 1.35103 * 120.02464 * 179.97438 * 26 25 24 28 28 C 1.38175 * 119.99113 * 269.72860 * 22 21 19 29 29 H 1.08997 * 109.46714 * 59.99917 * 1 2 3 30 30 H 1.08999 * 109.46666 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47041 * 299.99697 * 1 2 3 32 32 H 1.09002 * 109.88192 * 100.02896 * 5 3 2 33 33 H 1.09000 * 109.88128 * 339.01749 * 5 3 2 34 34 H 0.96997 * 120.00493 * 180.02562 * 10 9 7 35 35 H 1.08999 * 110.36956 * 142.96999 * 15 6 5 36 36 H 1.09003 * 110.36599 * 265.28903 * 15 6 5 37 37 H 0.96999 * 120.00092 * 93.54637 * 18 16 15 38 38 H 1.09004 * 109.47342 * 300.00652 * 21 19 18 39 39 H 1.09006 * 109.46955 * 59.99736 * 21 19 18 40 40 H 1.07996 * 119.97425 * 0.02562 * 23 22 21 41 41 H 1.08000 * 119.98541 * 179.97438 * 24 23 22 42 42 H 1.07993 * 120.01685 * 179.97438 * 25 24 23 43 43 H 1.08004 * 120.00835 * 359.97438 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3762 2.0111 0.5368 5 6 2.2658 1.7894 -1.4429 6 7 3.5567 2.4929 -1.4486 7 6 4.1551 3.0540 -2.5451 8 1 5.1088 3.5508 -2.4449 9 6 3.5359 2.9842 -3.7855 10 7 2.3733 2.3791 -3.9076 11 14 4.3516 3.7501 -5.2812 12 1 5.2253 2.7446 -5.9378 13 1 3.3088 4.1999 -6.2380 14 1 5.1695 4.9147 -4.8569 15 6 4.1009 2.4935 -0.0785 16 6 3.4384 1.2751 0.6118 17 1 3.9535 0.3505 0.3510 18 7 3.3929 1.4555 2.0650 19 6 4.4462 1.0907 2.8227 20 8 5.4318 0.6135 2.3015 21 6 4.3991 1.2757 4.3175 22 6 5.6909 0.7921 4.9244 23 6 6.7505 1.6664 5.0818 24 6 7.9361 1.2241 5.6379 25 6 8.0634 -0.0927 6.0382 26 6 7.0031 -0.9689 5.8815 27 9 7.1266 -2.2563 6.2719 28 6 5.8141 -0.5235 5.3287 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.4718 2.4692 -1.7521 33 1 2.3063 0.9351 -2.1187 34 1 1.9407 2.3300 -4.7744 35 1 5.1841 2.3745 -0.1004 36 1 3.8300 3.4150 0.4369 37 1 2.6047 1.8375 2.4818 38 1 4.2616 2.3321 4.5487 39 1 3.5679 0.7027 4.7286 40 1 6.6516 2.6956 4.7700 41 1 8.7632 1.9078 5.7599 42 1 8.9900 -0.4382 6.4722 43 1 4.9847 -1.2050 5.2101 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082358136.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:41 Heat of formation + Delta-G solvation = -69.688945 kcal Electronic energy + Delta-G solvation = -26793.673425 eV Core-core repulsion = 22754.389498 eV Total energy + Delta-G solvation = -4039.283927 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.01669 -40.10350 -38.97948 -37.98300 -35.91095 -34.05079 -33.05413 -31.73696 -30.71732 -29.01701 -28.09951 -26.73304 -26.15539 -24.22229 -22.93727 -22.27951 -20.70935 -20.50868 -19.88710 -17.65154 -17.27573 -16.82677 -16.59388 -16.34443 -16.30433 -15.68772 -15.56127 -14.96245 -14.85164 -14.45420 -14.23951 -14.17557 -13.73965 -13.49502 -13.37455 -13.23434 -12.83633 -12.41594 -12.24987 -12.11195 -11.92312 -11.82686 -11.51528 -11.26938 -11.23044 -11.02382 -10.81131 -10.76960 -10.16060 -10.00642 -9.84421 -9.78208 -9.18688 -9.06082 -8.83286 -8.77827 -8.60550 -6.90333 -5.74656 -3.09676 0.97073 1.04587 2.76329 3.15084 3.40118 3.45018 3.46557 3.57125 4.04538 4.10728 4.38662 4.49806 4.55097 4.81079 4.89345 4.99433 5.04912 5.12865 5.19541 5.28935 5.37781 5.47312 5.55567 5.63045 5.63966 5.70185 5.83951 5.87403 5.91883 5.92526 6.03359 6.10865 6.14223 6.27870 6.50737 6.62282 6.71787 6.83834 7.23101 7.45984 7.64671 7.70010 7.84004 8.18907 8.38243 9.16255 9.76387 10.39339 11.36790 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015933 B = 0.002849 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.940377 B = 9824.506230 C =10952.117176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.379 6.379 3 C 0.056 3.944 4 H 0.063 0.937 5 C 0.163 3.837 6 N -0.600 5.600 7 C -0.229 4.229 8 H 0.081 0.919 9 C -0.007 4.007 10 N -0.923 5.923 11 Si 0.915 3.085 12 H -0.288 1.288 13 H -0.290 1.290 14 H -0.281 1.281 15 C 0.132 3.868 16 C 0.135 3.865 17 H 0.103 0.897 18 N -0.717 5.717 19 C 0.513 3.487 20 O -0.527 6.527 21 C -0.105 4.105 22 C -0.033 4.033 23 C -0.114 4.114 24 C -0.090 4.090 25 C -0.157 4.157 26 C 0.097 3.903 27 F -0.142 7.142 28 C -0.139 4.139 29 H 0.046 0.954 30 H 0.079 0.921 31 H 0.033 0.967 32 H 0.048 0.952 33 H 0.062 0.938 34 H 0.253 0.747 35 H 0.051 0.949 36 H 0.023 0.977 37 H 0.396 0.604 38 H 0.107 0.893 39 H 0.104 0.896 40 H 0.129 0.871 41 H 0.133 0.867 42 H 0.133 0.867 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.843 -1.888 21.525 21.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.297 6.297 3 C -0.003 4.003 4 H 0.081 0.919 5 C 0.037 3.963 6 N -0.328 5.328 7 C -0.357 4.357 8 H 0.099 0.901 9 C -0.203 4.203 10 N -0.570 5.570 11 Si 0.745 3.255 12 H -0.215 1.215 13 H -0.217 1.217 14 H -0.206 1.206 15 C 0.004 3.996 16 C 0.030 3.970 17 H 0.121 0.879 18 N -0.368 5.368 19 C 0.298 3.702 20 O -0.403 6.403 21 C -0.145 4.145 22 C -0.034 4.034 23 C -0.133 4.133 24 C -0.108 4.108 25 C -0.175 4.175 26 C 0.078 3.922 27 F -0.121 7.121 28 C -0.158 4.158 29 H 0.065 0.935 30 H 0.097 0.903 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.040 0.960 37 H 0.230 0.770 38 H 0.125 0.875 39 H 0.123 0.877 40 H 0.147 0.853 41 H 0.150 0.850 42 H 0.151 0.849 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 1.622 -2.435 20.912 21.116 hybrid contribution -0.301 0.512 -0.637 0.871 sum 1.321 -1.924 20.276 20.410 Atomic orbital electron populations 1.22702 0.81648 1.02050 0.99851 1.87903 1.19176 1.27540 1.95081 1.23857 0.92575 0.84083 0.99802 0.91948 1.21585 0.88596 0.96980 0.89093 1.44255 1.20045 1.65808 1.02693 1.19081 1.02413 1.28859 0.85307 0.90140 1.24820 0.97160 1.00720 0.97648 1.69937 1.16218 1.47607 1.23266 0.86074 0.78136 0.78731 0.82551 1.21472 1.21665 1.20630 1.21820 0.97504 0.93560 0.86703 1.22397 0.96077 1.01021 0.77512 0.87920 1.45945 1.18490 1.64574 1.07773 1.20355 0.83188 0.78178 0.88484 1.90763 1.31841 1.43297 1.74376 1.20719 0.96697 1.04225 0.92833 1.19112 0.95088 0.92822 0.96370 1.21087 0.92775 1.00193 0.99199 1.20963 0.97688 0.94867 0.97256 1.21126 0.98540 0.94081 1.03797 1.17634 0.95382 0.78893 1.00273 1.91495 1.96470 1.35252 1.88850 1.20963 0.97346 0.96425 1.01089 0.93516 0.90252 0.94829 0.93394 0.91976 0.93660 0.93118 0.95986 0.77009 0.87465 0.87729 0.85307 0.84956 0.84921 0.84887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.88 101.05 1.10 1.57 16 2 O -0.38 -6.84 10.44 -35.23 -0.37 -7.21 16 3 C 0.06 1.03 3.04 -24.76 -0.08 0.96 16 4 H 0.06 1.00 7.75 -51.93 -0.40 0.60 16 5 C 0.16 3.92 5.14 -3.07 -0.02 3.90 16 6 N -0.60 -15.40 3.39 -170.07 -0.58 -15.98 16 7 C -0.23 -6.41 10.28 -15.06 -0.15 -6.56 16 8 H 0.08 2.18 7.83 -52.48 -0.41 1.77 16 9 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 10 N -0.92 -26.93 10.31 55.49 0.57 -26.35 16 11 Si 0.91 22.15 29.55 -169.99 -5.02 17.13 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 15 C 0.13 2.79 6.93 -2.53 -0.02 2.77 16 16 C 0.14 2.49 3.05 -65.64 -0.20 2.29 16 17 H 0.10 2.20 7.73 -51.93 -0.40 1.80 16 18 N -0.72 -9.79 5.23 -51.59 -0.27 -10.06 16 19 C 0.51 7.15 7.82 -10.98 -0.09 7.06 16 20 O -0.53 -9.89 15.78 5.55 0.09 -9.80 16 21 C -0.10 -0.95 5.83 -29.04 -0.17 -1.12 16 22 C -0.03 -0.36 4.37 -104.64 -0.46 -0.82 16 23 C -0.11 -1.15 9.70 -39.57 -0.38 -1.53 16 24 C -0.09 -0.83 10.04 -39.59 -0.40 -1.23 16 25 C -0.16 -1.57 10.03 -39.52 -0.40 -1.96 16 26 C 0.10 1.13 7.30 -39.42 -0.29 0.84 16 27 F -0.14 -1.74 17.27 2.25 0.04 -1.70 16 28 C -0.14 -1.58 9.68 -39.52 -0.38 -1.96 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.03 0.38 8.11 -51.93 -0.42 -0.04 16 32 H 0.05 1.24 7.51 -51.93 -0.39 0.85 16 33 H 0.06 1.71 7.29 -51.93 -0.38 1.33 16 34 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 35 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.40 4.03 8.52 -40.82 -0.35 3.68 16 38 H 0.11 0.69 8.09 -51.93 -0.42 0.27 16 39 H 0.10 0.70 8.08 -51.93 -0.42 0.28 16 40 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 41 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 42 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 43 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16 LS Contribution 366.89 15.07 5.53 5.53 Total: -1.00 -34.29 366.89 -8.14 -42.43 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -6.11 Total: 2.10 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: -2.02 Total: 3.91 kcal Atomic # 7 Polarization: -52.11 SS G_CDS: -0.28 Total: -52.39 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: -0.28 Total: -17.01 kcal Atomic # 9 Polarization: -1.74 SS G_CDS: 0.04 Total: -1.70 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.29 -8.14 -42.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082358136.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.257 kcal (2) G-P(sol) polarization free energy of solvation -34.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds