Wall clock time and date at job start Fri Apr 10 2020 18:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42893 * 113.99673 * 2 1 4 4 H 1.09000 * 110.78564 * 31.78938 * 3 2 1 5 5 C 1.54325 * 110.72271 * 268.54262 * 3 2 1 6 6 N 1.47018 * 107.40412 * 219.52456 * 5 3 2 7 7 C 1.36936 * 125.64999 * 178.82784 * 6 5 3 8 8 H 1.08004 * 120.00405 * 180.02562 * 7 6 5 9 9 C 1.38812 * 120.00093 * 0.02562 * 7 6 5 10 10 N 1.31626 * 119.99909 * 0.02562 * 9 7 6 11 11 Si 1.86793 * 120.00506 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.46953 * 90.00082 * 11 9 7 13 13 H 1.48500 * 109.47552 * 210.00252 * 11 9 7 14 14 H 1.48501 * 109.47075 * 330.00551 * 11 9 7 15 15 C 1.47426 * 108.70517 * 358.86539 * 6 5 3 16 16 C 1.54914 * 104.82992 * 24.12623 * 15 6 5 17 17 H 1.09000 * 111.00339 * 81.07133 * 16 15 6 18 18 N 1.46502 * 111.00105 * 204.88119 * 16 15 6 19 19 C 1.34783 * 119.99989 * 273.54475 * 18 16 15 20 20 O 1.21283 * 119.99981 * 0.02562 * 19 18 16 21 21 C 1.50695 * 120.00227 * 180.02562 * 19 18 16 22 22 C 1.50695 * 109.47293 * 179.97438 * 21 19 18 23 23 C 1.38271 * 119.98423 * 90.00062 * 22 21 19 24 24 C 1.38223 * 120.05117 * 180.02562 * 23 22 21 25 25 C 1.38216 * 120.02600 * 359.95406 * 24 23 22 26 26 C 1.38440 * 119.97343 * 0.02619 * 25 24 23 27 27 F 1.35103 * 120.02464 * 179.97438 * 26 25 24 28 28 C 1.38175 * 119.99113 * 269.72860 * 22 21 19 29 29 H 1.08997 * 109.46714 * 59.99917 * 1 2 3 30 30 H 1.08999 * 109.46666 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47041 * 299.99697 * 1 2 3 32 32 H 1.09002 * 109.88192 * 100.02896 * 5 3 2 33 33 H 1.09000 * 109.88128 * 339.01749 * 5 3 2 34 34 H 0.96997 * 120.00493 * 180.02562 * 10 9 7 35 35 H 1.08999 * 110.36956 * 142.96999 * 15 6 5 36 36 H 1.09003 * 110.36599 * 265.28903 * 15 6 5 37 37 H 0.96999 * 120.00092 * 93.54637 * 18 16 15 38 38 H 1.09004 * 109.47342 * 300.00652 * 21 19 18 39 39 H 1.09006 * 109.46955 * 59.99736 * 21 19 18 40 40 H 1.07996 * 119.97425 * 0.02562 * 23 22 21 41 41 H 1.08000 * 119.98541 * 179.97438 * 24 23 22 42 42 H 1.07993 * 120.01685 * 179.97438 * 25 24 23 43 43 H 1.08004 * 120.00835 * 359.97438 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3762 2.0111 0.5368 5 6 2.2658 1.7894 -1.4429 6 7 3.5567 2.4929 -1.4486 7 6 4.1551 3.0540 -2.5451 8 1 5.1088 3.5508 -2.4449 9 6 3.5359 2.9842 -3.7855 10 7 2.3733 2.3791 -3.9076 11 14 4.3516 3.7501 -5.2812 12 1 5.2253 2.7446 -5.9378 13 1 3.3088 4.1999 -6.2380 14 1 5.1695 4.9147 -4.8569 15 6 4.1009 2.4935 -0.0785 16 6 3.4384 1.2751 0.6118 17 1 3.9535 0.3505 0.3510 18 7 3.3929 1.4555 2.0650 19 6 4.4462 1.0907 2.8227 20 8 5.4318 0.6135 2.3015 21 6 4.3991 1.2757 4.3175 22 6 5.6909 0.7921 4.9244 23 6 6.7505 1.6664 5.0818 24 6 7.9361 1.2241 5.6379 25 6 8.0634 -0.0927 6.0382 26 6 7.0031 -0.9689 5.8815 27 9 7.1266 -2.2563 6.2719 28 6 5.8141 -0.5235 5.3287 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.4718 2.4692 -1.7521 33 1 2.3063 0.9351 -2.1187 34 1 1.9407 2.3300 -4.7744 35 1 5.1841 2.3745 -0.1004 36 1 3.8300 3.4150 0.4369 37 1 2.6047 1.8375 2.4818 38 1 4.2616 2.3321 4.5487 39 1 3.5679 0.7027 4.7286 40 1 6.6516 2.6956 4.7700 41 1 8.7632 1.9078 5.7599 42 1 8.9900 -0.4382 6.4722 43 1 4.9847 -1.2050 5.2101 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082358136.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:40 Heat of formation + Delta-G solvation = -93.260216 kcal Electronic energy + Delta-G solvation = -26794.695552 eV Core-core repulsion = 22754.389498 eV Total energy + Delta-G solvation = -4040.306054 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.89253 -41.22070 -40.10074 -39.22447 -37.48847 -35.57127 -33.99691 -33.47954 -31.48266 -30.65241 -29.36603 -28.12995 -27.52103 -25.97480 -23.70901 -23.28313 -22.27297 -21.96224 -21.23547 -19.17940 -18.33588 -18.20110 -17.67562 -17.38031 -17.21465 -17.07937 -16.57410 -16.47194 -16.03473 -15.83017 -15.75648 -15.19327 -15.01767 -14.85304 -14.54720 -14.27899 -14.12842 -13.99627 -13.61182 -13.24381 -13.08327 -13.02013 -12.84650 -12.75723 -12.60183 -12.50216 -12.29856 -12.07890 -11.97705 -11.86720 -11.60627 -11.02635 -10.77772 -10.55293 -10.09236 -9.89489 -9.60955 -8.97096 -7.88243 -5.26257 0.19186 0.27737 1.45125 1.47843 1.56134 1.69025 2.08296 2.46133 2.70138 2.78674 3.26739 3.31268 3.52600 3.63168 3.77734 3.86130 3.94392 4.00041 4.11107 4.17296 4.29571 4.37444 4.40079 4.47394 4.53969 4.60888 4.65693 4.66370 4.84315 4.89095 4.93419 5.04339 5.12632 5.17593 5.33610 5.37795 5.38128 5.49362 5.52921 5.65432 5.97270 6.13292 6.31793 6.60937 7.04264 7.32964 7.69585 8.31809 9.21173 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015933 B = 0.002849 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.940377 B = 9824.506230 C =10952.117176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.398 6.398 3 C 0.077 3.923 4 H 0.100 0.900 5 C 0.172 3.828 6 N -0.623 5.623 7 C -0.247 4.247 8 H 0.083 0.917 9 C -0.063 4.063 10 N -0.949 5.949 11 Si 0.981 3.019 12 H -0.289 1.289 13 H -0.290 1.290 14 H -0.267 1.267 15 C 0.133 3.867 16 C 0.153 3.847 17 H 0.067 0.933 18 N -0.701 5.701 19 C 0.511 3.489 20 O -0.581 6.581 21 C -0.092 4.092 22 C -0.048 4.048 23 C -0.122 4.122 24 C -0.092 4.092 25 C -0.161 4.161 26 C 0.071 3.929 27 F -0.152 7.152 28 C -0.154 4.154 29 H 0.032 0.968 30 H 0.099 0.901 31 H 0.068 0.932 32 H 0.022 0.978 33 H 0.015 0.985 34 H 0.249 0.751 35 H 0.032 0.968 36 H 0.045 0.955 37 H 0.419 0.581 38 H 0.144 0.856 39 H 0.135 0.865 40 H 0.147 0.853 41 H 0.160 0.840 42 H 0.149 0.851 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.429 -0.479 23.704 23.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.317 6.317 3 C 0.018 3.982 4 H 0.118 0.882 5 C 0.046 3.954 6 N -0.350 5.350 7 C -0.376 4.376 8 H 0.101 0.899 9 C -0.256 4.256 10 N -0.598 5.598 11 Si 0.809 3.191 12 H -0.216 1.216 13 H -0.216 1.216 14 H -0.191 1.191 15 C 0.006 3.994 16 C 0.046 3.954 17 H 0.085 0.915 18 N -0.354 5.354 19 C 0.300 3.700 20 O -0.460 6.460 21 C -0.131 4.131 22 C -0.049 4.049 23 C -0.140 4.140 24 C -0.110 4.110 25 C -0.180 4.180 26 C 0.052 3.948 27 F -0.131 7.131 28 C -0.172 4.172 29 H 0.051 0.949 30 H 0.118 0.882 31 H 0.086 0.914 32 H 0.040 0.960 33 H 0.033 0.967 34 H 0.058 0.942 35 H 0.051 0.949 36 H 0.063 0.937 37 H 0.257 0.743 38 H 0.162 0.838 39 H 0.153 0.847 40 H 0.165 0.835 41 H 0.177 0.823 42 H 0.167 0.833 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.181 -1.012 23.157 23.209 hybrid contribution -0.145 0.043 -1.288 1.296 sum 1.036 -0.969 21.869 21.915 Atomic orbital electron populations 1.22977 0.79285 1.03843 1.00821 1.87888 1.21796 1.27053 1.94960 1.23519 0.93351 0.85166 0.96149 0.88212 1.21330 0.87393 0.94504 0.92180 1.44532 1.20849 1.65692 1.03963 1.19456 1.02695 1.28856 0.86574 0.89947 1.25676 0.97899 1.01580 1.00420 1.70161 1.17447 1.48739 1.23417 0.85048 0.77149 0.78123 0.78819 1.21580 1.21650 1.19122 1.21928 0.96572 0.95689 0.85210 1.21771 0.95180 0.98022 0.80388 0.91476 1.45688 1.19704 1.64581 1.05429 1.21254 0.81924 0.76451 0.90413 1.90754 1.33911 1.45558 1.75756 1.20767 0.96985 1.07035 0.88290 1.19368 0.96213 0.92681 0.96620 1.21454 0.92784 1.01088 0.98678 1.21337 0.98406 0.94922 0.96338 1.21420 0.98770 0.94331 1.03472 1.17964 0.96410 0.78900 1.01571 1.91460 1.96577 1.35970 1.89120 1.21164 0.97545 0.97114 1.01423 0.94916 0.88216 0.91362 0.95961 0.96708 0.94220 0.94929 0.93700 0.74325 0.83787 0.84660 0.83508 0.82284 0.83283 0.84488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 10.88 113.37 1.23 1.91 16 2 O -0.40 -14.02 10.44 -148.98 -1.56 -15.57 16 3 C 0.08 2.78 3.04 31.87 0.10 2.88 16 4 H 0.10 2.87 7.75 -2.39 -0.02 2.85 16 5 C 0.17 8.52 5.14 86.73 0.45 8.97 16 6 N -0.62 -32.70 3.39 -691.97 -2.35 -35.05 16 7 C -0.25 -14.16 10.28 84.03 0.86 -13.30 16 8 H 0.08 4.54 7.83 -2.91 -0.02 4.52 16 9 C -0.06 -3.60 5.49 84.86 0.47 -3.13 16 10 N -0.95 -57.30 10.31 21.65 0.22 -57.07 16 11 Si 0.98 46.23 29.55 68.60 2.03 48.25 16 12 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 13 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 14 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 15 C 0.13 5.60 6.93 86.86 0.60 6.21 16 16 C 0.15 5.56 3.05 46.47 0.14 5.70 16 17 H 0.07 2.95 7.73 -2.39 -0.02 2.93 16 18 N -0.70 -17.29 5.23 -435.53 -2.28 -19.57 16 19 C 0.51 13.14 7.82 87.65 0.69 13.82 16 20 O -0.58 -21.59 15.78 -3.04 -0.05 -21.64 16 21 C -0.09 -1.33 5.83 29.10 0.17 -1.16 16 22 C -0.05 -0.93 4.37 -19.87 -0.09 -1.02 16 23 C -0.12 -2.15 9.70 22.27 0.22 -1.94 16 24 C -0.09 -1.51 10.04 22.26 0.22 -1.29 16 25 C -0.16 -3.04 10.03 22.31 0.22 -2.81 16 26 C 0.07 1.61 7.30 22.38 0.16 1.78 16 27 F -0.15 -3.77 17.27 44.97 0.78 -2.99 16 28 C -0.15 -3.34 9.68 22.31 0.22 -3.12 16 29 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.07 1.29 8.11 -2.39 -0.02 1.27 16 32 H 0.02 1.20 7.51 -2.39 -0.02 1.18 16 33 H 0.01 0.86 7.29 -2.39 -0.02 0.84 16 34 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 35 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.42 6.66 8.52 -92.71 -0.79 5.87 16 38 H 0.14 1.08 8.09 -2.39 -0.02 1.06 16 39 H 0.14 1.19 8.08 -2.38 -0.02 1.17 16 40 H 0.15 1.98 8.06 -2.91 -0.02 1.95 16 41 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16 42 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 43 H 0.14 2.69 8.06 -2.91 -0.02 2.67 16 Total: -1.00 -79.65 366.89 2.69 -76.96 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: 0.24 Total: 13.19 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: 5.66 Total: 13.50 kcal Atomic # 7 Polarization: -107.29 SS G_CDS: -4.40 Total: -111.69 kcal Atomic # 8 Polarization: -35.61 SS G_CDS: -1.60 Total: -37.21 kcal Atomic # 9 Polarization: -3.77 SS G_CDS: 0.78 Total: -2.99 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.25 kcal Total: -79.65 2.69 -76.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082358136.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.304 kcal (2) G-P(sol) polarization free energy of solvation -79.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds