Wall clock time and date at job start Fri Apr 10 2020 18:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50695 * 109.47190 * 2 1 4 4 C 1.37988 * 120.05106 * 101.88396 * 3 2 1 5 5 C 1.38304 * 120.17410 * 179.97438 * 4 3 2 6 6 C 1.38593 * 120.26589 * 0.02562 * 5 4 3 7 7 F 1.35100 * 119.94806 * 179.97438 * 6 5 4 8 8 C 1.38169 * 120.09589 * 359.74188 * 6 5 4 9 9 C 1.39564 * 120.04427 * 281.86097 * 3 2 1 10 10 C 1.47848 * 120.13308 * 359.97438 * 9 3 2 11 11 O 1.21549 * 119.99806 * 354.79520 * 10 9 3 12 12 N 1.34777 * 119.99772 * 174.79066 * 10 9 3 13 13 C 1.46501 * 119.99505 * 180.02562 * 12 10 9 14 14 H 1.08997 * 110.91709 * 31.10219 * 13 12 10 15 15 C 1.54909 * 111.00242 * 267.19475 * 13 12 10 16 16 N 1.47430 * 104.83233 * 204.91941 * 15 13 12 17 17 C 1.36929 * 125.64834 * 204.16648 * 16 15 13 18 18 H 1.08002 * 120.00495 * 359.97438 * 17 16 15 19 19 C 1.38813 * 119.99959 * 179.97438 * 17 16 15 20 20 N 1.31620 * 120.00198 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 120.00230 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.46976 * 59.99621 * 21 19 17 23 23 H 1.48492 * 109.47330 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.46857 * 300.00392 * 21 19 17 25 25 C 1.47022 * 108.70339 * 24.12994 * 16 15 13 26 26 C 1.54326 * 107.26883 * 358.94218 * 25 16 15 27 27 H 1.09002 * 110.72165 * 219.26333 * 26 25 16 28 28 O 1.42901 * 110.72261 * 96.17193 * 26 25 16 29 29 H 1.08999 * 109.47436 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47331 * 300.00530 * 1 2 3 31 31 H 1.09006 * 109.47261 * 59.99831 * 1 2 3 32 32 H 1.08999 * 109.47160 * 239.99421 * 2 1 3 33 33 H 1.08999 * 109.46864 * 119.99634 * 2 1 3 34 34 H 1.08004 * 119.90968 * 359.97438 * 4 3 2 35 35 H 1.07997 * 119.86504 * 180.02562 * 5 4 3 36 36 H 1.07998 * 120.08754 * 180.28136 * 8 6 5 37 37 H 0.96995 * 120.00300 * 0.02562 * 12 10 9 38 38 H 1.08997 * 110.36356 * 86.08534 * 15 13 12 39 39 H 1.08994 * 110.46337 * 323.80695 * 15 13 12 40 40 H 0.97000 * 120.00082 * 179.97438 * 20 19 17 41 41 H 1.09000 * 109.88658 * 239.52563 * 25 16 15 42 42 H 1.08997 * 110.00807 * 118.42756 * 25 16 15 43 43 H 0.96692 * 114.00555 * 61.44947 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4945 1.9903 1.1688 5 6 2.9566 3.2938 1.1716 6 6 2.9582 4.0369 0.0017 7 9 3.4106 5.3099 0.0119 8 6 2.5023 3.4761 -1.1759 9 6 2.0311 2.1623 -1.1823 10 6 1.5380 1.5568 -2.4377 11 8 1.2215 0.3835 -2.4632 12 7 1.4393 2.3059 -3.5539 13 6 0.9501 1.7059 -4.7977 14 1 0.2334 0.9113 -4.5908 15 6 2.1249 1.1832 -5.6615 16 7 1.6100 1.1903 -7.0429 17 6 2.0713 0.4118 -8.0706 18 1 2.8816 -0.2819 -7.9010 19 6 1.4975 0.5141 -9.3304 20 7 0.5104 1.3597 -9.5374 21 14 2.1264 -0.5485 -10.7323 22 1 1.9630 -1.9816 -10.3789 23 1 1.3523 -0.2516 -11.9642 24 1 3.5634 -0.2575 -10.9678 25 6 0.5184 2.1710 -7.1342 26 6 0.3334 2.7825 -5.7294 27 1 -0.7240 2.9278 -5.5082 28 8 1.0456 4.0163 -5.6172 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 2.4954 1.4165 2.0838 35 1 3.3177 3.7344 2.0891 36 1 2.5079 4.0537 -2.0884 37 1 1.6922 3.2420 -3.5336 38 1 2.3944 0.1703 -5.3623 39 1 2.9862 1.8455 -5.5744 40 1 0.1097 1.4315 -10.4178 41 1 -0.4005 1.6750 -7.4465 42 1 0.7784 2.9530 -7.8475 43 1 0.7492 4.6991 -6.2343 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083603487.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:47 Heat of formation + Delta-G solvation = -73.875042 kcal Electronic energy + Delta-G solvation = -27444.746695 eV Core-core repulsion = 23405.281245 eV Total energy + Delta-G solvation = -4039.465450 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.10507 -40.54622 -38.79064 -37.64232 -34.88668 -34.61387 -33.41302 -32.09971 -31.19654 -29.28536 -28.45434 -27.10766 -24.91639 -24.05559 -23.68366 -21.58804 -20.81334 -20.36075 -20.00081 -18.33745 -17.26396 -17.05187 -16.60626 -16.06632 -15.92799 -15.82400 -15.24367 -14.83859 -14.76985 -14.34182 -14.26742 -14.05006 -13.75300 -13.47449 -13.21827 -12.92882 -12.76540 -12.67987 -12.51615 -12.22115 -11.78269 -11.71567 -11.33520 -11.20589 -11.08231 -10.88841 -10.83634 -10.54224 -10.47583 -10.15353 -9.83976 -9.53713 -9.41815 -9.35151 -8.84722 -8.70227 -8.63469 -6.90336 -5.77010 -3.10189 0.51368 0.88367 2.72740 3.20618 3.39852 3.43779 3.45203 3.55385 3.94024 4.36254 4.42858 4.49408 4.59026 4.59961 4.84276 4.99465 5.22968 5.27515 5.33191 5.39611 5.45238 5.49452 5.52758 5.67296 5.67973 5.79209 5.80887 5.83860 5.96012 6.03000 6.05926 6.18541 6.29797 6.42169 6.53777 6.60163 6.63451 6.89459 7.29557 7.41153 7.68273 7.73645 8.03935 8.17247 8.35453 9.15529 9.75667 10.39822 11.35170 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.018833 B = 0.003099 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.400838 B = 9032.876508 C = 9775.612459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.094 4.094 3 C -0.030 4.030 4 C -0.102 4.102 5 C -0.129 4.129 6 C 0.084 3.916 7 F -0.138 7.138 8 C -0.117 4.117 9 C -0.102 4.102 10 C 0.553 3.447 11 O -0.525 6.525 12 N -0.701 5.701 13 C 0.139 3.861 14 H 0.108 0.892 15 C 0.131 3.869 16 N -0.600 5.600 17 C -0.226 4.226 18 H 0.079 0.921 19 C -0.008 4.008 20 N -0.927 5.927 21 Si 0.915 3.085 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.285 1.285 25 C 0.154 3.846 26 C 0.067 3.933 27 H 0.061 0.939 28 O -0.570 6.570 29 H 0.057 0.943 30 H 0.043 0.957 31 H 0.062 0.938 32 H 0.108 0.892 33 H 0.063 0.937 34 H 0.138 0.862 35 H 0.138 0.862 36 H 0.142 0.858 37 H 0.406 0.594 38 H 0.045 0.955 39 H 0.026 0.974 40 H 0.253 0.747 41 H 0.056 0.944 42 H 0.053 0.947 43 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.704 5.310 21.147 21.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.130 4.130 3 C -0.031 4.031 4 C -0.120 4.120 5 C -0.148 4.148 6 C 0.065 3.935 7 F -0.117 7.117 8 C -0.136 4.136 9 C -0.106 4.106 10 C 0.339 3.661 11 O -0.403 6.403 12 N -0.352 5.352 13 C 0.034 3.966 14 H 0.126 0.874 15 C 0.004 3.996 16 N -0.327 5.327 17 C -0.354 4.354 18 H 0.097 0.903 19 C -0.204 4.204 20 N -0.575 5.575 21 Si 0.745 3.255 22 H -0.211 1.211 23 H -0.216 1.216 24 H -0.211 1.211 25 C 0.028 3.972 26 C 0.007 3.993 27 H 0.079 0.921 28 O -0.376 6.376 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.126 0.874 33 H 0.081 0.919 34 H 0.156 0.844 35 H 0.156 0.844 36 H 0.159 0.841 37 H 0.243 0.757 38 H 0.063 0.937 39 H 0.043 0.957 40 H 0.064 0.936 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 0.741 4.158 21.313 21.728 hybrid contribution 0.276 0.686 -1.283 1.481 sum 1.017 4.844 20.030 20.633 Atomic orbital electron populations 1.21616 0.94270 1.01888 1.01456 1.20826 0.96899 0.91299 1.04014 1.20168 0.94780 0.96854 0.91308 1.20925 0.98714 0.94257 0.98085 1.21312 1.01024 0.95002 0.97420 1.17492 1.01175 0.80129 0.94730 1.91520 1.86860 1.36044 1.97245 1.21357 0.99150 0.95242 0.97898 1.19726 1.02777 0.93613 0.94458 1.18114 0.78526 0.86310 0.83123 1.90734 1.49220 1.15419 1.84940 1.45744 1.65758 1.14453 1.09231 1.22397 0.97775 0.94904 0.81563 0.87445 1.21830 0.93894 0.98394 0.85474 1.44262 1.38797 1.45052 1.04587 1.19048 1.13984 1.14804 0.87591 0.90293 1.24791 0.98465 0.99592 0.97576 1.69897 1.26773 1.38810 1.21984 0.86145 0.77985 0.79877 0.81457 1.21065 1.21580 1.21136 1.21875 0.92874 0.92816 0.89590 1.23524 0.93623 0.84008 0.98115 0.92070 1.86214 1.64291 1.23772 1.63367 0.92406 0.93775 0.91925 0.87367 0.91874 0.84403 0.84401 0.84062 0.75744 0.93696 0.95657 0.93646 0.92588 0.92896 0.77092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.41 37.16 0.35 -1.15 16 2 C -0.09 -1.03 5.34 -27.89 -0.15 -1.18 16 3 C -0.03 -0.33 5.18 -104.22 -0.54 -0.87 16 4 C -0.10 -0.89 9.65 -39.65 -0.38 -1.27 16 5 C -0.13 -1.12 10.02 -39.43 -0.40 -1.51 16 6 C 0.08 0.88 7.29 -39.48 -0.29 0.60 16 7 F -0.14 -1.53 17.26 2.25 0.04 -1.49 16 8 C -0.12 -1.31 9.51 -39.11 -0.37 -1.68 16 9 C -0.10 -1.28 5.86 -104.97 -0.62 -1.90 16 10 C 0.55 8.31 7.33 -12.33 -0.09 8.22 16 11 O -0.52 -9.04 11.44 5.32 0.06 -8.98 16 12 N -0.70 -10.62 5.12 -52.67 -0.27 -10.89 16 13 C 0.14 2.52 3.31 -65.78 -0.22 2.30 16 14 H 0.11 2.05 7.54 -51.93 -0.39 1.66 16 15 C 0.13 2.84 6.92 -2.53 -0.02 2.82 16 16 N -0.60 -15.26 3.39 -170.07 -0.58 -15.84 16 17 C -0.23 -6.32 10.28 -15.06 -0.15 -6.47 16 18 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 19 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 20 N -0.93 -26.58 10.31 55.49 0.57 -26.01 16 21 Si 0.92 22.05 29.55 -169.99 -5.02 17.02 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 25 C 0.15 3.55 5.13 -3.06 -0.02 3.53 16 26 C 0.07 1.19 4.20 -24.89 -0.10 1.08 16 27 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 28 O -0.57 -8.92 12.15 -35.23 -0.43 -9.35 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.04 0.42 8.14 -51.92 -0.42 0.00 16 31 H 0.06 0.83 6.45 -51.93 -0.33 0.49 16 32 H 0.11 1.46 5.91 -51.93 -0.31 1.16 16 33 H 0.06 0.55 7.98 -51.93 -0.41 0.14 16 34 H 0.14 0.83 8.02 -52.48 -0.42 0.41 16 35 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 36 H 0.14 1.45 6.44 -52.49 -0.34 1.12 16 37 H 0.41 5.57 5.65 -40.82 -0.23 5.34 16 38 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 41 H 0.06 1.42 7.38 -51.93 -0.38 1.04 16 42 H 0.05 1.33 7.42 -51.93 -0.39 0.95 16 43 H 0.38 4.70 9.09 45.56 0.41 5.11 16 LS Contribution 352.27 15.07 5.31 5.31 Total: -1.00 -31.35 352.27 -8.28 -39.63 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -4.87 Total: 8.41 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: -3.09 Total: 2.18 kcal Atomic # 7 Polarization: -52.46 SS G_CDS: -0.27 Total: -52.74 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: -0.37 Total: -18.32 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.35 -8.28 -39.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083603487.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.243 kcal (2) G-P(sol) polarization free energy of solvation -31.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds