Wall clock time and date at job start Fri Apr 10 2020 18:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50695 * 109.47190 * 2 1 4 4 C 1.37988 * 120.05106 * 101.88396 * 3 2 1 5 5 C 1.38304 * 120.17410 * 179.97438 * 4 3 2 6 6 C 1.38593 * 120.26589 * 0.02562 * 5 4 3 7 7 F 1.35100 * 119.94806 * 179.97438 * 6 5 4 8 8 C 1.38169 * 120.09589 * 359.74188 * 6 5 4 9 9 C 1.39564 * 120.04427 * 281.86097 * 3 2 1 10 10 C 1.47848 * 120.13308 * 359.97438 * 9 3 2 11 11 O 1.21549 * 119.99806 * 354.79520 * 10 9 3 12 12 N 1.34777 * 119.99772 * 174.79066 * 10 9 3 13 13 C 1.46501 * 119.99505 * 180.02562 * 12 10 9 14 14 H 1.08997 * 110.91709 * 31.10219 * 13 12 10 15 15 C 1.54909 * 111.00242 * 267.19475 * 13 12 10 16 16 N 1.47430 * 104.83233 * 204.91941 * 15 13 12 17 17 C 1.36929 * 125.64834 * 204.16648 * 16 15 13 18 18 H 1.08002 * 120.00495 * 359.97438 * 17 16 15 19 19 C 1.38813 * 119.99959 * 179.97438 * 17 16 15 20 20 N 1.31620 * 120.00198 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 120.00230 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.46976 * 59.99621 * 21 19 17 23 23 H 1.48492 * 109.47330 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.46857 * 300.00392 * 21 19 17 25 25 C 1.47022 * 108.70339 * 24.12994 * 16 15 13 26 26 C 1.54326 * 107.26883 * 358.94218 * 25 16 15 27 27 H 1.09002 * 110.72165 * 219.26333 * 26 25 16 28 28 O 1.42901 * 110.72261 * 96.17193 * 26 25 16 29 29 H 1.08999 * 109.47436 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47331 * 300.00530 * 1 2 3 31 31 H 1.09006 * 109.47261 * 59.99831 * 1 2 3 32 32 H 1.08999 * 109.47160 * 239.99421 * 2 1 3 33 33 H 1.08999 * 109.46864 * 119.99634 * 2 1 3 34 34 H 1.08004 * 119.90968 * 359.97438 * 4 3 2 35 35 H 1.07997 * 119.86504 * 180.02562 * 5 4 3 36 36 H 1.07998 * 120.08754 * 180.28136 * 8 6 5 37 37 H 0.96995 * 120.00300 * 0.02562 * 12 10 9 38 38 H 1.08997 * 110.36356 * 86.08534 * 15 13 12 39 39 H 1.08994 * 110.46337 * 323.80695 * 15 13 12 40 40 H 0.97000 * 120.00082 * 179.97438 * 20 19 17 41 41 H 1.09000 * 109.88658 * 239.52563 * 25 16 15 42 42 H 1.08997 * 110.00807 * 118.42756 * 25 16 15 43 43 H 0.96692 * 114.00555 * 61.44947 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4945 1.9903 1.1688 5 6 2.9566 3.2938 1.1716 6 6 2.9582 4.0369 0.0017 7 9 3.4106 5.3099 0.0119 8 6 2.5023 3.4761 -1.1759 9 6 2.0311 2.1623 -1.1823 10 6 1.5380 1.5568 -2.4377 11 8 1.2215 0.3835 -2.4632 12 7 1.4393 2.3059 -3.5539 13 6 0.9501 1.7059 -4.7977 14 1 0.2334 0.9113 -4.5908 15 6 2.1249 1.1832 -5.6615 16 7 1.6100 1.1903 -7.0429 17 6 2.0713 0.4118 -8.0706 18 1 2.8816 -0.2819 -7.9010 19 6 1.4975 0.5141 -9.3304 20 7 0.5104 1.3597 -9.5374 21 14 2.1264 -0.5485 -10.7323 22 1 1.9630 -1.9816 -10.3789 23 1 1.3523 -0.2516 -11.9642 24 1 3.5634 -0.2575 -10.9678 25 6 0.5184 2.1710 -7.1342 26 6 0.3334 2.7825 -5.7294 27 1 -0.7240 2.9278 -5.5082 28 8 1.0456 4.0163 -5.6172 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 2.4954 1.4165 2.0838 35 1 3.3177 3.7344 2.0891 36 1 2.5079 4.0537 -2.0884 37 1 1.6922 3.2420 -3.5336 38 1 2.3944 0.1703 -5.3623 39 1 2.9862 1.8455 -5.5744 40 1 0.1097 1.4315 -10.4178 41 1 -0.4005 1.6750 -7.4465 42 1 0.7784 2.9530 -7.8475 43 1 0.7492 4.6991 -6.2343 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083603487.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:46 Heat of formation + Delta-G solvation = -95.348901 kcal Electronic energy + Delta-G solvation = -27445.677871 eV Core-core repulsion = 23405.281245 eV Total energy + Delta-G solvation = -4040.396626 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.91620 -41.62343 -40.08503 -38.88556 -36.47522 -35.85670 -34.49624 -33.69380 -32.39021 -30.31137 -29.99839 -28.77422 -26.57770 -25.28808 -24.48772 -22.71407 -22.31076 -21.60351 -21.46793 -19.52117 -18.90347 -18.36025 -17.72376 -17.04067 -16.84015 -16.81349 -16.64942 -16.51732 -15.99500 -15.78474 -15.45943 -15.09338 -14.83971 -14.77791 -14.44599 -14.38673 -14.16333 -14.02646 -13.68857 -13.41680 -13.19058 -12.84210 -12.74587 -12.59065 -12.52932 -12.28704 -12.17181 -12.08016 -11.91370 -11.89859 -11.83215 -10.91510 -10.77503 -10.64364 -10.26666 -10.04220 -9.58910 -8.96537 -7.89745 -5.25805 -0.33105 0.10310 1.45006 1.48144 1.54326 1.73317 1.98645 2.47974 2.63050 3.09537 3.18837 3.29237 3.52763 3.64655 3.68467 3.79707 3.85680 3.92843 4.02834 4.20545 4.23486 4.45262 4.47068 4.54519 4.60578 4.64301 4.73810 4.80852 4.91589 4.95350 5.00665 5.08672 5.16569 5.21291 5.33045 5.37960 5.44013 5.53253 5.60595 5.63248 5.79195 6.12887 6.51740 6.83007 7.05131 7.17430 7.69281 8.32895 9.19932 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.018833 B = 0.003099 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.400838 B = 9032.876508 C = 9775.612459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.092 4.092 3 C -0.037 4.037 4 C -0.091 4.091 5 C -0.113 4.113 6 C 0.073 3.927 7 F -0.143 7.143 8 C -0.121 4.121 9 C -0.122 4.122 10 C 0.551 3.449 11 O -0.551 6.551 12 N -0.695 5.695 13 C 0.154 3.846 14 H 0.097 0.903 15 C 0.133 3.867 16 N -0.621 5.621 17 C -0.250 4.250 18 H 0.077 0.923 19 C -0.059 4.059 20 N -0.948 5.948 21 Si 0.980 3.020 22 H -0.278 1.278 23 H -0.290 1.290 24 H -0.278 1.278 25 C 0.160 3.840 26 C 0.091 3.909 27 H 0.090 0.910 28 O -0.566 6.566 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.034 0.966 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.174 0.826 35 H 0.170 0.830 36 H 0.144 0.856 37 H 0.414 0.586 38 H 0.031 0.969 39 H 0.023 0.977 40 H 0.250 0.750 41 H 0.026 0.974 42 H 0.027 0.973 43 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.269 5.961 23.806 24.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.129 4.129 3 C -0.039 4.039 4 C -0.109 4.109 5 C -0.132 4.132 6 C 0.054 3.946 7 F -0.121 7.121 8 C -0.140 4.140 9 C -0.125 4.125 10 C 0.340 3.660 11 O -0.431 6.431 12 N -0.347 5.347 13 C 0.047 3.953 14 H 0.115 0.885 15 C 0.006 3.994 16 N -0.348 5.348 17 C -0.378 4.378 18 H 0.095 0.905 19 C -0.252 4.252 20 N -0.596 5.596 21 Si 0.808 3.192 22 H -0.204 1.204 23 H -0.215 1.215 24 H -0.204 1.204 25 C 0.035 3.965 26 C 0.030 3.970 27 H 0.108 0.892 28 O -0.375 6.375 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.053 0.947 32 H 0.096 0.904 33 H 0.110 0.890 34 H 0.191 0.809 35 H 0.187 0.813 36 H 0.162 0.838 37 H 0.253 0.747 38 H 0.049 0.951 39 H 0.041 0.959 40 H 0.059 0.941 41 H 0.044 0.956 42 H 0.045 0.955 43 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 1.319 4.845 24.003 24.522 hybrid contribution 0.150 0.501 -2.030 2.096 sum 1.469 5.346 21.973 22.661 Atomic orbital electron populations 1.21575 0.94492 1.01869 1.00973 1.20770 0.96709 0.91513 1.03896 1.20334 0.95014 0.96752 0.91763 1.21263 0.97009 0.94352 0.98261 1.21688 0.99096 0.94630 0.97781 1.17657 1.01583 0.80188 0.95200 1.91511 1.86965 1.36384 1.97280 1.21365 0.99216 0.94790 0.98647 1.19522 1.04881 0.94466 0.93642 1.18583 0.77712 0.85959 0.83774 1.90732 1.50278 1.16638 1.85456 1.45590 1.65993 1.14805 1.08290 1.21962 0.95912 0.94925 0.82479 0.88467 1.21869 0.95163 0.97758 0.84628 1.44538 1.39401 1.45272 1.05565 1.19385 1.14281 1.15356 0.88808 0.90501 1.25607 0.98859 1.00987 0.99786 1.70099 1.27553 1.39867 1.22084 0.85137 0.77539 0.78340 0.78210 1.20435 1.21549 1.20416 1.21723 0.90789 0.91519 0.92507 1.23169 0.95242 0.84313 0.94230 0.89231 1.86185 1.64309 1.23248 1.63773 0.92252 0.91822 0.94688 0.90417 0.89008 0.80903 0.81278 0.83848 0.74736 0.95058 0.95927 0.94095 0.95612 0.95463 0.75071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.80 9.41 71.98 0.68 -2.12 16 2 C -0.09 -1.91 5.34 29.84 0.16 -1.75 16 3 C -0.04 -0.76 5.18 -19.60 -0.10 -0.86 16 4 C -0.09 -1.23 9.65 22.23 0.21 -1.01 16 5 C -0.11 -1.52 10.02 22.37 0.22 -1.30 16 6 C 0.07 1.35 7.29 22.34 0.16 1.52 16 7 F -0.14 -2.86 17.26 44.97 0.78 -2.08 16 8 C -0.12 -2.54 9.51 22.58 0.21 -2.33 16 9 C -0.12 -2.94 5.86 -20.09 -0.12 -3.05 16 10 C 0.55 16.72 7.33 86.79 0.64 17.35 16 11 O -0.55 -19.58 11.44 -3.87 -0.04 -19.62 16 12 N -0.69 -21.02 5.12 -438.82 -2.25 -23.26 16 13 C 0.15 5.64 3.31 46.38 0.15 5.80 16 14 H 0.10 3.81 7.54 -2.39 -0.02 3.79 16 15 C 0.13 5.91 6.92 86.85 0.60 6.51 16 16 N -0.62 -32.66 3.39 -691.99 -2.35 -35.01 16 17 C -0.25 -14.36 10.28 84.04 0.86 -13.49 16 18 H 0.08 4.31 7.83 -2.91 -0.02 4.28 16 19 C -0.06 -3.36 5.49 84.86 0.47 -2.90 16 20 N -0.95 -55.81 10.31 21.65 0.22 -55.59 16 21 Si 0.98 45.99 29.55 68.60 2.03 48.02 16 22 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 23 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 24 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 25 C 0.16 7.61 5.13 86.73 0.45 8.06 16 26 C 0.09 3.18 4.20 31.78 0.13 3.31 16 27 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 28 O -0.57 -17.04 12.15 -148.98 -1.81 -18.85 16 29 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 31 H 0.03 0.93 6.45 -2.38 -0.02 0.91 16 32 H 0.08 2.13 5.91 -2.39 -0.01 2.11 16 33 H 0.09 1.34 7.98 -2.39 -0.02 1.32 16 34 H 0.17 1.13 8.02 -2.91 -0.02 1.11 16 35 H 0.17 1.24 8.06 -2.91 -0.02 1.22 16 36 H 0.14 2.82 6.44 -2.91 -0.02 2.80 16 37 H 0.41 11.07 5.65 -92.71 -0.52 10.55 16 38 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 41 H 0.03 1.36 7.38 -2.39 -0.02 1.35 16 42 H 0.03 1.42 7.42 -2.39 -0.02 1.40 16 43 H 0.40 9.21 9.09 -74.06 -0.67 8.54 16 Total: -1.00 -70.31 352.27 1.18 -69.14 By element: Atomic # 1 Polarization: 23.66 SS G_CDS: -0.13 Total: 23.52 kcal Atomic # 6 Polarization: 8.99 SS G_CDS: 4.73 Total: 13.73 kcal Atomic # 7 Polarization: -109.48 SS G_CDS: -4.37 Total: -113.85 kcal Atomic # 8 Polarization: -36.61 SS G_CDS: -1.85 Total: -38.47 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.78 Total: -2.08 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -70.31 1.18 -69.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083603487.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.213 kcal (2) G-P(sol) polarization free energy of solvation -70.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds