Wall clock time and date at job start Fri Apr 10 2020 18:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37844 * 120.05982 * 2 1 4 4 C 1.38656 * 120.11595 * 180.29705 * 3 2 1 5 5 F 1.35096 * 119.87642 * 179.69744 * 4 3 2 6 6 C 1.38653 * 120.23921 * 359.66994 * 4 3 2 7 7 C 1.37832 * 120.11911 * 0.02562 * 6 4 3 8 8 C 1.50707 * 120.05868 * 180.02562 * 7 6 4 9 9 C 1.39649 * 119.88364 * 0.02562 * 7 6 4 10 10 C 1.47726 * 120.11920 * 180.02562 * 9 7 6 11 11 O 1.21559 * 120.00304 * 89.99786 * 10 9 7 12 12 N 1.34775 * 119.99577 * 269.99179 * 10 9 7 13 13 C 1.46500 * 119.99838 * 180.02562 * 12 10 9 14 14 H 1.09002 * 110.88469 * 31.12619 * 13 12 10 15 15 C 1.55134 * 111.19437 * 267.19223 * 13 12 10 16 16 N 1.47425 * 104.72157 * 279.19206 * 15 13 12 17 17 C 1.36933 * 125.64812 * 155.81472 * 16 15 13 18 18 H 1.08000 * 120.00253 * 349.39183 * 17 16 15 19 19 C 1.38813 * 119.99762 * 169.39090 * 17 16 15 20 20 N 1.31622 * 119.99962 * 152.99773 * 19 17 16 21 21 Si 1.86797 * 120.00318 * 332.99342 * 19 17 16 22 22 H 1.48512 * 109.46853 * 85.20366 * 21 19 17 23 23 H 1.48500 * 109.47114 * 325.21006 * 21 19 17 24 24 H 1.48500 * 109.47381 * 205.20213 * 21 19 17 25 25 C 1.47024 * 108.70346 * 335.55181 * 16 15 13 26 26 C 1.54322 * 107.27070 * 1.28801 * 25 16 15 27 27 H 1.08998 * 110.72271 * 263.65456 * 26 25 16 28 28 O 1.42901 * 110.72187 * 140.55797 * 26 25 16 29 29 H 1.08996 * 109.47643 * 270.32840 * 1 2 3 30 30 H 1.08999 * 109.47151 * 30.32835 * 1 2 3 31 31 H 1.09002 * 109.46452 * 150.32505 * 1 2 3 32 32 H 1.07998 * 119.93610 * 0.02562 * 3 2 1 33 33 H 1.08001 * 119.93482 * 180.02562 * 6 4 3 34 34 H 1.09005 * 109.46696 * 269.97496 * 8 7 6 35 35 H 1.09001 * 109.47037 * 29.97303 * 8 7 6 36 36 H 1.08994 * 109.47108 * 149.97881 * 8 7 6 37 37 H 0.97005 * 120.00053 * 0.02562 * 12 10 9 38 38 H 1.08998 * 110.49537 * 160.35225 * 15 13 12 39 39 H 1.09000 * 110.33823 * 37.95299 * 15 13 12 40 40 H 0.97002 * 120.00152 * 5.05294 * 20 19 17 41 41 H 1.09007 * 109.88407 * 120.70344 * 25 16 15 42 42 H 1.09002 * 109.88260 * 241.86932 * 25 16 15 43 43 H 0.96695 * 114.00057 * 61.45129 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1930 0.0000 4 6 3.5840 1.1944 -0.0062 5 9 4.2558 2.3665 -0.0124 6 6 4.2835 -0.0028 -0.0056 7 6 3.6030 -1.2014 0.0007 8 6 4.3647 -2.5018 0.0020 9 6 2.2065 -1.2086 0.0059 10 6 1.4719 -2.4903 0.0133 11 8 1.1736 -3.0139 1.0690 12 7 1.1324 -3.0790 -1.1506 13 6 0.4034 -4.3497 -1.1434 14 1 -0.2434 -4.4216 -0.2690 15 6 1.3772 -5.5553 -1.2134 16 7 1.7245 -5.6740 -2.6412 17 6 2.8615 -6.2509 -3.1408 18 1 3.6711 -6.5129 -2.4757 19 6 2.9734 -6.4989 -4.5019 20 7 4.1609 -6.5368 -5.0685 21 14 1.4390 -6.7790 -5.5297 22 1 0.8874 -5.4698 -5.9626 23 1 0.4248 -7.4996 -4.7188 24 1 1.7847 -7.5900 -6.7247 25 6 0.6448 -5.0760 -3.4403 26 6 -0.4089 -4.5323 -2.4526 27 1 -1.2144 -5.2532 -2.3125 28 8 -0.9270 -3.2797 -2.9050 29 1 -0.3634 0.0059 1.0276 30 1 -0.3633 0.8870 -0.5189 31 1 -0.3632 -0.8929 -0.5088 32 1 1.6574 2.1283 0.0004 33 1 5.3635 0.0040 -0.0100 34 1 4.5440 -2.8188 -1.0254 35 1 5.3183 -2.3638 0.5115 36 1 3.7824 -3.2633 0.5207 37 1 1.3707 -2.6613 -1.9930 38 1 0.8853 -6.4638 -0.8659 39 1 2.2702 -5.3559 -0.6211 40 1 4.9605 -6.4646 -4.5241 41 1 1.0401 -4.2609 -4.0465 42 1 0.1953 -5.8338 -4.0821 43 1 -1.3773 -3.3258 -3.7595 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083693146.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:49 Heat of formation + Delta-G solvation = -78.124453 kcal Electronic energy + Delta-G solvation = -28110.215838 eV Core-core repulsion = 24070.566120 eV Total energy + Delta-G solvation = -4039.649718 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.08182 -40.50184 -39.01949 -37.72838 -35.41258 -33.89365 -33.83431 -32.17859 -31.50886 -28.97804 -28.00465 -27.50756 -27.10174 -24.18058 -23.20279 -21.18211 -20.99798 -20.82028 -19.83420 -17.99398 -17.46156 -17.12347 -17.00714 -16.99724 -16.13350 -15.79368 -15.43569 -14.96360 -14.49916 -14.11467 -13.90494 -13.75862 -13.67847 -13.48009 -13.29620 -13.26459 -13.07734 -12.96731 -12.85909 -12.35551 -12.14688 -11.90586 -11.88529 -11.49929 -11.37710 -11.29952 -11.17250 -10.75126 -10.72335 -10.07002 -9.78055 -9.56439 -9.27137 -8.93816 -8.89810 -8.75364 -8.47266 -7.21571 -6.41487 -3.27935 0.79988 1.02018 2.69875 3.15299 3.29202 3.40978 3.43024 3.58952 3.98877 4.18168 4.46273 4.49654 4.50245 4.76482 4.80824 4.87146 4.98749 5.10061 5.15263 5.29308 5.36864 5.38187 5.39280 5.46853 5.53862 5.62622 5.68548 5.75369 5.85929 5.88709 5.96128 6.05521 6.13680 6.15265 6.28469 6.31981 6.42189 6.47354 6.66217 6.77036 7.56295 7.68246 7.72447 8.24521 8.35246 8.93901 9.48126 10.13609 11.06491 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015025 B = 0.004116 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.071139 B = 6800.812648 C = 7519.843807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.016 4.016 3 C -0.167 4.167 4 C 0.119 3.881 5 F -0.138 7.138 6 C -0.165 4.165 7 C -0.010 4.010 8 C -0.126 4.126 9 C -0.136 4.136 10 C 0.570 3.430 11 O -0.541 6.541 12 N -0.685 5.685 13 C 0.140 3.860 14 H 0.101 0.899 15 C 0.122 3.878 16 N -0.601 5.601 17 C -0.330 4.330 18 H 0.078 0.922 19 C -0.018 4.018 20 N -0.915 5.915 21 Si 1.069 2.931 22 H -0.295 1.295 23 H -0.294 1.294 24 H -0.299 1.299 25 C 0.084 3.916 26 C 0.083 3.917 27 H 0.078 0.922 28 O -0.558 6.558 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.139 0.861 33 H 0.140 0.860 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.408 0.592 38 H 0.036 0.964 39 H 0.055 0.945 40 H 0.264 0.736 41 H 0.050 0.950 42 H 0.032 0.968 43 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.284 13.447 8.171 17.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.017 4.017 3 C -0.186 4.186 4 C 0.100 3.900 5 F -0.117 7.117 6 C -0.183 4.183 7 C -0.010 4.010 8 C -0.183 4.183 9 C -0.139 4.139 10 C 0.356 3.644 11 O -0.419 6.419 12 N -0.334 5.334 13 C 0.034 3.966 14 H 0.119 0.881 15 C -0.004 4.004 16 N -0.330 5.330 17 C -0.457 4.457 18 H 0.096 0.904 19 C -0.220 4.220 20 N -0.556 5.556 21 Si 0.903 3.097 22 H -0.223 1.223 23 H -0.222 1.222 24 H -0.227 1.227 25 C -0.041 4.041 26 C 0.023 3.977 27 H 0.096 0.904 28 O -0.363 6.363 29 H 0.098 0.902 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.157 0.843 33 H 0.158 0.842 34 H 0.107 0.893 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.244 0.756 38 H 0.054 0.946 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.049 0.951 43 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -7.655 12.997 7.899 17.028 hybrid contribution 0.602 0.348 0.548 0.886 sum -7.053 13.346 8.447 17.298 Atomic orbital electron populations 1.20917 0.89854 1.03858 1.03240 1.19683 0.96463 0.90681 0.94857 1.20856 0.92102 0.99028 1.06593 1.17788 0.90094 0.81097 1.01045 1.91501 1.80552 1.45937 1.93706 1.20911 1.00963 0.90360 1.06098 1.19761 0.91788 0.95582 0.93919 1.20967 0.99973 0.93253 1.04076 1.19766 0.93449 0.93469 1.07257 1.18009 0.78496 0.83801 0.84117 1.90785 1.55044 1.65132 1.30975 1.45578 1.56495 1.22781 1.08523 1.22272 0.93009 0.84417 0.96886 0.88103 1.22089 0.96571 0.93756 0.88031 1.44673 1.20549 1.68277 0.99521 1.20006 0.91537 1.40073 0.94125 0.90422 1.25773 1.03131 0.98838 0.94208 1.70919 0.97727 1.50521 1.36398 0.83717 0.74700 0.76239 0.75048 1.22312 1.22206 1.22661 1.22410 0.90029 0.97052 0.94620 1.23181 0.94761 0.85629 0.94102 0.90422 1.86450 1.77085 1.31241 1.41523 0.90235 0.90704 0.90409 0.84320 0.84186 0.89333 0.90685 0.90623 0.75633 0.94611 0.92645 0.92605 0.93184 0.95087 0.77342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.29 9.62 36.01 0.35 -0.94 16 2 C -0.02 -0.20 5.91 -104.24 -0.62 -0.81 16 3 C -0.17 -1.87 9.67 -39.57 -0.38 -2.26 16 4 C 0.12 1.43 7.31 -39.27 -0.29 1.14 16 5 F -0.14 -1.66 17.26 2.25 0.04 -1.62 16 6 C -0.16 -1.99 9.66 -39.58 -0.38 -2.38 16 7 C -0.01 -0.13 5.91 -104.24 -0.62 -0.75 16 8 C -0.13 -1.70 9.62 36.01 0.35 -1.36 16 9 C -0.14 -1.95 5.63 -104.97 -0.59 -2.54 16 10 C 0.57 9.22 4.18 -12.38 -0.05 9.17 16 11 O -0.54 -10.24 16.74 5.31 0.09 -10.15 16 12 N -0.68 -10.88 4.81 -52.59 -0.25 -11.13 16 13 C 0.14 2.30 3.31 -65.66 -0.22 2.08 16 14 H 0.10 1.60 7.54 -51.93 -0.39 1.21 16 15 C 0.12 2.37 6.95 -2.41 -0.02 2.36 16 16 N -0.60 -13.71 3.29 -169.93 -0.56 -14.26 16 17 C -0.33 -8.97 10.43 -15.06 -0.16 -9.13 16 18 H 0.08 2.25 8.06 -52.49 -0.42 1.83 16 19 C -0.02 -0.52 5.43 -17.43 -0.09 -0.61 16 20 N -0.92 -27.60 13.70 55.49 0.76 -26.84 16 21 Si 1.07 25.50 24.66 -169.99 -4.19 21.30 16 22 H -0.30 -6.52 6.76 56.52 0.38 -6.14 16 23 H -0.29 -6.67 6.71 56.52 0.38 -6.29 16 24 H -0.30 -7.32 7.11 56.52 0.40 -6.92 16 25 C 0.08 1.66 4.70 -3.06 -0.01 1.65 16 26 C 0.08 1.27 4.12 -24.90 -0.10 1.17 16 27 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 28 O -0.56 -7.30 12.67 -35.23 -0.45 -7.75 16 29 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 31 H 0.08 0.93 7.08 -51.93 -0.37 0.56 16 32 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 33 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 34 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.07 0.84 8.09 -51.93 -0.42 0.42 16 36 H 0.07 1.15 7.08 -51.93 -0.37 0.78 16 37 H 0.41 6.50 8.37 -40.82 -0.34 6.16 16 38 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.26 7.89 8.73 -40.82 -0.36 7.53 16 41 H 0.05 1.04 7.74 -51.92 -0.40 0.64 16 42 H 0.03 0.65 3.76 -51.93 -0.20 0.45 16 43 H 0.38 3.50 9.11 45.56 0.42 3.91 16 LS Contribution 356.61 15.07 5.37 5.37 Total: -1.00 -32.24 356.61 -7.09 -39.34 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -5.07 Total: 8.97 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: -2.84 Total: -3.22 kcal Atomic # 7 Polarization: -52.19 SS G_CDS: -0.05 Total: -52.24 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: -0.36 Total: -17.91 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 25.50 SS G_CDS: -4.19 Total: 21.30 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.24 -7.09 -39.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083693146.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.788 kcal (2) G-P(sol) polarization free energy of solvation -32.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds