Wall clock time and date at job start Fri Apr 10 2020 18:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47186 * 2 1 4 4 C 1.50700 * 109.47146 * 119.99348 * 2 1 3 5 5 O 1.21280 * 119.99883 * 120.00382 * 4 2 1 6 6 N 1.34773 * 120.00375 * 300.01033 * 4 2 1 7 7 C 1.46500 * 120.00200 * 180.02562 * 6 4 2 8 8 H 1.09002 * 110.88857 * 34.29247 * 7 6 4 9 9 C 1.54915 * 111.03417 * 270.38731 * 7 6 4 10 10 N 1.47418 * 104.83107 * 204.89999 * 9 7 6 11 11 C 1.36939 * 125.64960 * 204.07747 * 10 9 7 12 12 H 1.08001 * 119.99891 * 0.04058 * 11 10 9 13 13 C 1.38809 * 120.00452 * 180.02562 * 11 10 9 14 14 N 1.31623 * 119.99639 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00533 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47213 * 59.99443 * 15 13 11 17 17 H 1.48493 * 109.47428 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.46563 * 299.99940 * 15 13 11 19 19 C 1.47029 * 108.70495 * 24.13113 * 10 9 7 20 20 C 1.54327 * 107.26790 * 358.93814 * 19 10 9 21 21 H 1.09004 * 110.71649 * 219.44279 * 20 19 10 22 22 O 1.42898 * 110.86978 * 96.24495 * 20 19 10 23 23 C 1.50696 * 109.47742 * 239.99556 * 2 1 3 24 24 C 1.38217 * 120.01231 * 300.00483 * 23 2 1 25 25 C 1.38227 * 120.02334 * 179.97438 * 24 23 2 26 26 C 1.38265 * 120.05300 * 0.02627 * 25 24 23 27 27 C 1.38173 * 120.02392 * 359.97438 * 26 25 24 28 28 C 1.38440 * 120.01110 * 119.71817 * 23 2 1 29 29 F 1.35095 * 120.02774 * 0.02562 * 28 23 2 30 30 H 1.09005 * 109.46646 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47353 * 299.99895 * 1 2 3 32 32 H 1.09000 * 109.46714 * 60.00639 * 1 2 3 33 33 H 0.97001 * 119.99748 * 359.97438 * 6 4 2 34 34 H 1.08995 * 110.36257 * 323.74273 * 9 7 6 35 35 H 1.08997 * 110.36405 * 86.05992 * 9 7 6 36 36 H 0.97001 * 119.99838 * 179.97438 * 14 13 11 37 37 H 1.08993 * 109.88066 * 239.51797 * 19 10 9 38 38 H 1.09003 * 109.87770 * 118.35455 * 19 10 9 39 39 H 0.96699 * 114.00256 * 66.38577 * 22 20 19 40 40 H 1.07997 * 119.98996 * 359.97438 * 24 23 2 41 41 H 1.08008 * 119.97268 * 179.97438 * 25 24 23 42 42 H 1.08004 * 119.98398 * 179.97438 * 26 25 24 43 43 H 1.08000 * 120.01154 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.7296 -1.6963 1.1194 6 7 1.7066 -0.2499 2.4546 7 6 2.1954 -0.9400 3.6508 8 1 3.1903 -1.3524 3.4824 9 6 1.2055 -2.0439 4.0994 10 7 1.4577 -2.2135 5.5419 11 6 1.1885 -3.3402 6.2722 12 1 0.7541 -4.2043 5.7915 13 6 1.4742 -3.3719 7.6302 14 7 2.0034 -2.3188 8.2161 15 14 1.1076 -4.9091 8.6263 16 1 1.8747 -6.0532 8.0714 17 1 1.5012 -4.6879 10.0409 18 1 -0.3455 -5.2080 8.5582 19 6 2.0451 -0.9721 6.0670 20 6 2.1862 0.0053 4.8811 21 1 3.1220 0.5603 4.9481 22 8 1.0732 0.8996 4.8233 23 6 2.0325 -0.7105 -1.2303 24 6 1.6987 -2.0337 -1.4493 25 6 2.1591 -2.6855 -2.5780 26 6 2.9542 -2.0149 -3.4889 27 6 3.2891 -0.6920 -3.2721 28 6 2.8236 -0.0362 -2.1447 29 9 3.1461 1.2587 -1.9344 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 1.1491 0.5389 2.5435 34 1 0.1777 -1.7237 3.9290 35 1 1.4072 -2.9735 3.5671 36 1 2.2027 -2.3408 9.1651 37 1 3.0256 -1.1785 6.4961 38 1 1.3893 -0.5434 6.8248 39 1 1.0216 1.5121 5.5698 40 1 1.0781 -2.5587 -0.7383 41 1 1.8981 -3.7197 -2.7481 42 1 3.3136 -2.5253 -4.3703 43 1 3.9105 -0.1685 -3.9835 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083872080.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:54 Heat of formation + Delta-G solvation = -77.293548 kcal Electronic energy + Delta-G solvation = -27396.010526 eV Core-core repulsion = 23356.396838 eV Total energy + Delta-G solvation = -4039.613687 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.05157 -40.24005 -38.89983 -37.80392 -34.86164 -34.36696 -33.90832 -31.64755 -30.66186 -29.65155 -28.39900 -27.05178 -25.04950 -24.34723 -22.90741 -22.18396 -20.56266 -20.20730 -19.68031 -17.82175 -17.53404 -16.94990 -16.87089 -16.30470 -15.94098 -15.64359 -15.23731 -14.85043 -14.73931 -14.32187 -14.03956 -13.96738 -13.79297 -13.28342 -13.15077 -12.85012 -12.77014 -12.60607 -12.40097 -12.23802 -12.15257 -12.04559 -11.33779 -11.27067 -11.07746 -10.95205 -10.83841 -10.52164 -10.45741 -10.15328 -9.81871 -9.60770 -9.32475 -9.06950 -8.77973 -8.70540 -8.63173 -6.88245 -5.75482 -3.08529 0.99877 1.10234 2.80173 3.24286 3.40377 3.44221 3.45524 3.58682 4.10536 4.28696 4.45059 4.52136 4.60387 4.76904 4.92950 4.98718 5.05075 5.14587 5.22507 5.28713 5.36578 5.49334 5.54363 5.62163 5.71196 5.73959 5.86884 5.89142 5.91834 6.00592 6.08470 6.21642 6.22428 6.29725 6.60548 6.65464 6.74773 6.93404 7.32474 7.43466 7.71143 7.81317 8.05964 8.19250 8.45916 9.17173 9.77413 10.41928 11.36734 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.020960 B = 0.002951 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.561366 B = 9487.434682 C =10287.236034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.074 4.074 3 H 0.106 0.894 4 C 0.515 3.485 5 O -0.535 6.535 6 N -0.705 5.705 7 C 0.139 3.861 8 H 0.103 0.897 9 C 0.133 3.867 10 N -0.600 5.600 11 C -0.225 4.225 12 H 0.079 0.921 13 C -0.009 4.009 14 N -0.927 5.927 15 Si 0.915 3.085 16 H -0.284 1.284 17 H -0.290 1.290 18 H -0.285 1.285 19 C 0.155 3.845 20 C 0.068 3.932 21 H 0.060 0.940 22 O -0.568 6.568 23 C -0.096 4.096 24 C -0.055 4.055 25 C -0.131 4.131 26 C -0.093 4.093 27 C -0.159 4.159 28 C 0.102 3.898 29 F -0.140 7.140 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.407 0.593 34 H 0.025 0.975 35 H 0.043 0.957 36 H 0.253 0.747 37 H 0.055 0.945 38 H 0.053 0.947 39 H 0.380 0.620 40 H 0.131 0.869 41 H 0.129 0.871 42 H 0.130 0.870 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.848 7.892 -20.517 21.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.095 4.095 3 H 0.124 0.876 4 C 0.300 3.700 5 O -0.411 6.411 6 N -0.357 5.357 7 C 0.033 3.967 8 H 0.120 0.880 9 C 0.006 3.994 10 N -0.327 5.327 11 C -0.354 4.354 12 H 0.097 0.903 13 C -0.205 4.205 14 N -0.575 5.575 15 Si 0.745 3.255 16 H -0.211 1.211 17 H -0.216 1.216 18 H -0.212 1.212 19 C 0.029 3.971 20 C 0.008 3.992 21 H 0.078 0.922 22 O -0.374 6.374 23 C -0.097 4.097 24 C -0.073 4.073 25 C -0.149 4.149 26 C -0.111 4.111 27 C -0.177 4.177 28 C 0.082 3.918 29 F -0.119 7.119 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.242 0.758 34 H 0.043 0.957 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.227 0.773 40 H 0.149 0.851 41 H 0.147 0.853 42 H 0.148 0.852 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.418 6.831 -20.885 21.978 hybrid contribution -0.137 0.149 1.309 1.325 sum -0.555 6.981 -19.576 20.791 Atomic orbital electron populations 1.21797 0.91463 1.03369 1.03102 1.20214 0.98161 1.00550 0.90622 0.87552 1.20317 0.80513 0.84743 0.84426 1.90725 1.37765 1.26045 1.86578 1.45742 1.53177 1.31961 1.04784 1.22346 0.99457 0.93027 0.81845 0.87953 1.21814 0.95518 0.95592 0.86523 1.44270 1.73533 1.12459 1.02480 1.19046 1.35021 0.90905 0.90382 0.90330 1.24791 1.01153 0.97950 0.96589 1.69904 1.48861 1.28298 1.10419 0.86146 0.77997 0.82184 0.79146 1.21077 1.21585 1.21151 1.21858 0.99195 0.85014 0.91015 1.23505 0.87932 0.90834 0.96957 0.92190 1.86238 1.49686 1.51310 1.50153 1.19372 0.99731 0.95302 0.95296 1.20885 0.97685 0.92560 0.96209 1.21204 0.98734 1.00393 0.94563 1.20990 0.97270 0.93506 0.99384 1.21049 1.03108 0.96046 0.97530 1.17510 0.99043 0.78931 0.96286 1.91466 1.91184 1.34339 1.94888 0.91549 0.91103 0.91328 0.75770 0.95691 0.93839 0.93668 0.92659 0.92897 0.77273 0.85072 0.85325 0.85205 0.84915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 8.90 37.16 0.33 -1.00 16 2 C -0.07 -0.87 2.88 -92.93 -0.27 -1.14 16 3 H 0.11 1.16 7.13 -51.93 -0.37 0.79 16 4 C 0.52 7.90 7.02 -10.99 -0.08 7.83 16 5 O -0.53 -10.15 14.80 5.56 0.08 -10.07 16 6 N -0.71 -10.73 5.07 -51.73 -0.26 -10.99 16 7 C 0.14 2.58 3.25 -65.78 -0.21 2.37 16 8 H 0.10 2.05 7.63 -51.93 -0.40 1.66 16 9 C 0.13 2.91 6.92 -2.53 -0.02 2.89 16 10 N -0.60 -15.47 3.39 -170.07 -0.58 -16.04 16 11 C -0.23 -6.35 10.28 -15.06 -0.15 -6.51 16 12 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 13 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 14 N -0.93 -26.82 10.31 55.49 0.57 -26.25 16 15 Si 0.91 22.18 29.55 -169.99 -5.02 17.15 16 16 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 C 0.15 3.62 5.14 -3.06 -0.02 3.61 16 20 C 0.07 1.21 4.19 -24.90 -0.10 1.11 16 21 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 22 O -0.57 -8.89 12.14 -35.23 -0.43 -9.32 16 23 C -0.10 -1.18 4.40 -104.56 -0.46 -1.64 16 24 C -0.06 -0.66 7.93 -39.59 -0.31 -0.97 16 25 C -0.13 -1.30 10.04 -39.58 -0.40 -1.70 16 26 C -0.09 -0.84 10.04 -39.60 -0.40 -1.24 16 27 C -0.16 -1.58 10.03 -39.51 -0.40 -1.98 16 28 C 0.10 1.21 7.25 -39.42 -0.29 0.93 16 29 F -0.14 -1.72 16.19 2.25 0.04 -1.68 16 30 H 0.07 0.65 7.39 -51.93 -0.38 0.27 16 31 H 0.07 0.63 7.56 -51.93 -0.39 0.23 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.41 5.43 6.98 -40.82 -0.29 5.15 16 34 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 37 H 0.06 1.43 7.38 -51.93 -0.38 1.05 16 38 H 0.05 1.35 7.44 -51.93 -0.39 0.96 16 39 H 0.38 4.60 9.12 45.56 0.42 5.01 16 40 H 0.13 1.57 7.52 -52.49 -0.39 1.17 16 41 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 42 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 43 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 357.60 15.07 5.39 5.39 Total: -1.00 -33.16 357.60 -8.16 -41.32 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -5.08 Total: 8.30 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: -2.87 Total: 2.19 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: -0.27 Total: -53.28 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: -0.35 Total: -19.39 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.16 -8.16 -41.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083872080.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.974 kcal (2) G-P(sol) polarization free energy of solvation -33.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds