Wall clock time and date at job start Fri Apr 10 2020 18:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47186 * 2 1 4 4 C 1.50700 * 109.47146 * 119.99348 * 2 1 3 5 5 O 1.21280 * 119.99883 * 120.00382 * 4 2 1 6 6 N 1.34773 * 120.00375 * 300.01033 * 4 2 1 7 7 C 1.46500 * 120.00200 * 180.02562 * 6 4 2 8 8 H 1.09002 * 110.88857 * 34.29247 * 7 6 4 9 9 C 1.54915 * 111.03417 * 270.38731 * 7 6 4 10 10 N 1.47418 * 104.83107 * 204.89999 * 9 7 6 11 11 C 1.36939 * 125.64960 * 204.07747 * 10 9 7 12 12 H 1.08001 * 119.99891 * 0.04058 * 11 10 9 13 13 C 1.38809 * 120.00452 * 180.02562 * 11 10 9 14 14 N 1.31623 * 119.99639 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00533 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47213 * 59.99443 * 15 13 11 17 17 H 1.48493 * 109.47428 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.46563 * 299.99940 * 15 13 11 19 19 C 1.47029 * 108.70495 * 24.13113 * 10 9 7 20 20 C 1.54327 * 107.26790 * 358.93814 * 19 10 9 21 21 H 1.09004 * 110.71649 * 219.44279 * 20 19 10 22 22 O 1.42898 * 110.86978 * 96.24495 * 20 19 10 23 23 C 1.50696 * 109.47742 * 239.99556 * 2 1 3 24 24 C 1.38217 * 120.01231 * 300.00483 * 23 2 1 25 25 C 1.38227 * 120.02334 * 179.97438 * 24 23 2 26 26 C 1.38265 * 120.05300 * 0.02627 * 25 24 23 27 27 C 1.38173 * 120.02392 * 359.97438 * 26 25 24 28 28 C 1.38440 * 120.01110 * 119.71817 * 23 2 1 29 29 F 1.35095 * 120.02774 * 0.02562 * 28 23 2 30 30 H 1.09005 * 109.46646 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47353 * 299.99895 * 1 2 3 32 32 H 1.09000 * 109.46714 * 60.00639 * 1 2 3 33 33 H 0.97001 * 119.99748 * 359.97438 * 6 4 2 34 34 H 1.08995 * 110.36257 * 323.74273 * 9 7 6 35 35 H 1.08997 * 110.36405 * 86.05992 * 9 7 6 36 36 H 0.97001 * 119.99838 * 179.97438 * 14 13 11 37 37 H 1.08993 * 109.88066 * 239.51797 * 19 10 9 38 38 H 1.09003 * 109.87770 * 118.35455 * 19 10 9 39 39 H 0.96699 * 114.00256 * 66.38577 * 22 20 19 40 40 H 1.07997 * 119.98996 * 359.97438 * 24 23 2 41 41 H 1.08008 * 119.97268 * 179.97438 * 25 24 23 42 42 H 1.08004 * 119.98398 * 179.97438 * 26 25 24 43 43 H 1.08000 * 120.01154 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.7296 -1.6963 1.1194 6 7 1.7066 -0.2499 2.4546 7 6 2.1954 -0.9400 3.6508 8 1 3.1903 -1.3524 3.4824 9 6 1.2055 -2.0439 4.0994 10 7 1.4577 -2.2135 5.5419 11 6 1.1885 -3.3402 6.2722 12 1 0.7541 -4.2043 5.7915 13 6 1.4742 -3.3719 7.6302 14 7 2.0034 -2.3188 8.2161 15 14 1.1076 -4.9091 8.6263 16 1 1.8747 -6.0532 8.0714 17 1 1.5012 -4.6879 10.0409 18 1 -0.3455 -5.2080 8.5582 19 6 2.0451 -0.9721 6.0670 20 6 2.1862 0.0053 4.8811 21 1 3.1220 0.5603 4.9481 22 8 1.0732 0.8996 4.8233 23 6 2.0325 -0.7105 -1.2303 24 6 1.6987 -2.0337 -1.4493 25 6 2.1591 -2.6855 -2.5780 26 6 2.9542 -2.0149 -3.4889 27 6 3.2891 -0.6920 -3.2721 28 6 2.8236 -0.0362 -2.1447 29 9 3.1461 1.2587 -1.9344 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 1.1491 0.5389 2.5435 34 1 0.1777 -1.7237 3.9290 35 1 1.4072 -2.9735 3.5671 36 1 2.2027 -2.3408 9.1651 37 1 3.0256 -1.1785 6.4961 38 1 1.3893 -0.5434 6.8248 39 1 1.0216 1.5121 5.5698 40 1 1.0781 -2.5587 -0.7383 41 1 1.8981 -3.7197 -2.7481 42 1 3.3136 -2.5253 -4.3703 43 1 3.9105 -0.1685 -3.9835 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083872080.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:53 Heat of formation + Delta-G solvation = -100.618094 kcal Electronic energy + Delta-G solvation = -27397.021954 eV Core-core repulsion = 23356.396838 eV Total energy + Delta-G solvation = -4040.625116 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.92758 -41.42001 -40.05314 -39.14520 -36.47129 -35.50985 -35.22099 -33.53414 -31.45981 -30.69720 -30.00688 -28.73680 -26.55229 -25.66985 -23.79929 -23.20762 -22.30630 -21.67430 -20.95760 -19.22918 -18.68796 -18.32594 -18.13910 -17.34526 -16.99590 -16.85320 -16.56045 -16.35492 -15.99560 -15.78162 -15.36348 -15.01620 -14.85249 -14.66206 -14.49651 -14.34210 -14.10672 -13.99802 -13.60085 -13.21319 -13.17317 -12.98657 -12.92923 -12.78523 -12.73895 -12.30037 -12.16642 -12.13070 -11.98396 -11.88235 -11.81320 -10.92654 -10.80957 -10.76960 -10.09253 -9.87596 -9.60612 -8.95957 -7.89508 -5.25535 0.18534 0.30117 1.44679 1.48016 1.54115 1.57866 2.05856 2.48037 2.70719 3.15953 3.28630 3.29483 3.41130 3.58074 3.70845 3.81612 3.93255 3.95229 4.10062 4.14569 4.22601 4.25252 4.41242 4.45359 4.48969 4.64630 4.76043 4.81758 4.84608 4.96417 5.04007 5.10651 5.17819 5.24816 5.34421 5.42337 5.43602 5.48189 5.51882 5.63559 5.97038 6.13411 6.57737 6.86156 7.05446 7.24093 7.69858 8.33527 9.20228 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.020960 B = 0.002951 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.561366 B = 9487.434682 C =10287.236034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.065 4.065 3 H 0.119 0.881 4 C 0.515 3.485 5 O -0.573 6.573 6 N -0.694 5.694 7 C 0.152 3.848 8 H 0.087 0.913 9 C 0.135 3.865 10 N -0.622 5.622 11 C -0.249 4.249 12 H 0.077 0.923 13 C -0.060 4.060 14 N -0.948 5.948 15 Si 0.980 3.020 16 H -0.279 1.279 17 H -0.290 1.290 18 H -0.277 1.277 19 C 0.160 3.840 20 C 0.092 3.908 21 H 0.089 0.911 22 O -0.563 6.563 23 C -0.114 4.114 24 C -0.075 4.075 25 C -0.134 4.134 26 C -0.088 4.088 27 C -0.159 4.159 28 C 0.082 3.918 29 F -0.146 7.146 30 H 0.059 0.941 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.419 0.581 34 H 0.027 0.973 35 H 0.027 0.973 36 H 0.250 0.750 37 H 0.024 0.976 38 H 0.027 0.973 39 H 0.399 0.601 40 H 0.121 0.879 41 H 0.148 0.852 42 H 0.164 0.836 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.117 8.508 -22.330 23.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.086 4.086 3 H 0.137 0.863 4 C 0.302 3.698 5 O -0.452 6.452 6 N -0.346 5.346 7 C 0.045 3.955 8 H 0.105 0.895 9 C 0.008 3.992 10 N -0.349 5.349 11 C -0.378 4.378 12 H 0.095 0.905 13 C -0.253 4.253 14 N -0.597 5.597 15 Si 0.808 3.192 16 H -0.205 1.205 17 H -0.216 1.216 18 H -0.203 1.203 19 C 0.035 3.965 20 C 0.032 3.968 21 H 0.107 0.893 22 O -0.372 6.372 23 C -0.115 4.115 24 C -0.093 4.093 25 C -0.152 4.152 26 C -0.106 4.106 27 C -0.178 4.178 28 C 0.063 3.937 29 F -0.124 7.124 30 H 0.078 0.922 31 H 0.098 0.902 32 H 0.105 0.895 33 H 0.257 0.743 34 H 0.044 0.956 35 H 0.046 0.954 36 H 0.059 0.941 37 H 0.042 0.958 38 H 0.045 0.955 39 H 0.249 0.751 40 H 0.139 0.861 41 H 0.166 0.834 42 H 0.181 0.819 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -0.716 7.494 -22.722 23.936 hybrid contribution -0.064 -0.070 1.811 1.814 sum -0.781 7.424 -20.910 22.203 Atomic orbital electron populations 1.21810 0.89666 1.03377 1.04470 1.20197 0.99516 1.00382 0.88502 0.86340 1.20990 0.79489 0.84192 0.85155 1.90706 1.39479 1.27902 1.87126 1.45583 1.53220 1.31971 1.03826 1.21914 0.97697 0.92395 0.83511 0.89465 1.21846 0.96406 0.96230 0.84693 1.44552 1.73572 1.12696 1.04039 1.19388 1.35265 0.91950 0.91179 0.90508 1.25617 1.01246 1.00969 0.97509 1.70108 1.49439 1.29867 1.10255 0.85132 0.78047 0.78725 0.77301 1.20489 1.21556 1.20307 1.21713 0.96593 0.85444 0.92782 1.23111 0.89867 0.90124 0.93703 0.89325 1.86201 1.48753 1.51061 1.51141 1.19484 1.00602 0.95726 0.95715 1.20958 0.98518 0.92759 0.97068 1.21524 0.98329 1.01388 0.93990 1.21389 0.96086 0.93154 0.99959 1.21404 1.02708 0.96536 0.97148 1.17747 0.99776 0.78983 0.97232 1.91445 1.91307 1.34672 1.95024 0.92240 0.90212 0.89452 0.74309 0.95555 0.95433 0.94113 0.95826 0.95459 0.75051 0.86137 0.83375 0.81895 0.82722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 8.90 71.98 0.64 -1.73 16 2 C -0.06 -1.46 2.88 -12.29 -0.04 -1.50 16 3 H 0.12 2.38 7.13 -2.39 -0.02 2.36 16 4 C 0.51 15.57 7.02 87.66 0.62 16.19 16 5 O -0.57 -22.06 14.80 -3.03 -0.04 -22.10 16 6 N -0.69 -20.41 5.07 -435.96 -2.21 -22.62 16 7 C 0.15 5.61 3.25 46.38 0.15 5.76 16 8 H 0.09 3.54 7.63 -2.39 -0.02 3.53 16 9 C 0.13 6.02 6.92 86.86 0.60 6.62 16 10 N -0.62 -32.84 3.39 -691.98 -2.35 -35.19 16 11 C -0.25 -14.38 10.28 84.03 0.86 -13.51 16 12 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 13 C -0.06 -3.44 5.49 84.86 0.47 -2.98 16 14 N -0.95 -56.11 10.31 21.65 0.22 -55.89 16 15 Si 0.98 46.09 29.55 68.60 2.03 48.12 16 16 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 17 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 18 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 19 C 0.16 7.66 5.14 86.73 0.45 8.11 16 20 C 0.09 3.22 4.19 31.78 0.13 3.35 16 21 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 22 O -0.56 -16.45 12.14 -148.98 -1.81 -18.26 16 23 C -0.11 -2.73 4.40 -19.82 -0.09 -2.82 16 24 C -0.07 -1.75 7.93 22.26 0.18 -1.57 16 25 C -0.13 -2.47 10.04 22.27 0.22 -2.24 16 26 C -0.09 -1.36 10.04 22.26 0.22 -1.13 16 27 C -0.16 -2.83 10.03 22.31 0.22 -2.61 16 28 C 0.08 1.85 7.25 22.38 0.16 2.01 16 29 F -0.15 -3.39 16.19 44.97 0.73 -2.66 16 30 H 0.06 1.13 7.39 -2.38 -0.02 1.11 16 31 H 0.08 1.24 7.56 -2.39 -0.02 1.22 16 32 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.42 10.33 6.98 -92.71 -0.65 9.68 16 34 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 37 H 0.02 1.26 7.38 -2.39 -0.02 1.25 16 38 H 0.03 1.43 7.44 -2.39 -0.02 1.41 16 39 H 0.40 8.69 9.12 -74.06 -0.68 8.01 16 40 H 0.12 2.96 7.52 -2.91 -0.02 2.94 16 41 H 0.15 2.03 8.06 -2.91 -0.02 2.00 16 42 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16 43 H 0.16 1.98 8.06 -2.91 -0.02 1.95 16 Total: -1.00 -73.55 357.60 1.10 -72.45 By element: Atomic # 1 Polarization: 24.49 SS G_CDS: -0.27 Total: 24.21 kcal Atomic # 6 Polarization: 7.14 SS G_CDS: 4.80 Total: 11.94 kcal Atomic # 7 Polarization: -109.37 SS G_CDS: -4.34 Total: -113.70 kcal Atomic # 8 Polarization: -38.50 SS G_CDS: -1.85 Total: -40.36 kcal Atomic # 9 Polarization: -3.39 SS G_CDS: 0.73 Total: -2.66 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -73.55 1.10 -72.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083872080.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.169 kcal (2) G-P(sol) polarization free energy of solvation -73.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds