Wall clock time and date at job start Fri Apr 10 2020 18:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99981 * 2 1 4 4 H 1.48493 * 109.47326 * 89.99918 * 3 2 1 5 5 H 1.48506 * 109.46545 * 209.99668 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99379 * 3 2 1 7 7 C 1.38812 * 119.99535 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99468 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00429 * 0.02562 * 7 2 1 10 10 C 1.46494 * 120.00458 * 179.97438 * 9 7 2 11 11 H 1.09004 * 112.85218 * 23.79920 * 10 9 7 12 12 C 1.53777 * 113.62051 * 154.99990 * 10 9 7 13 13 C 1.53779 * 87.08680 * 139.98184 * 12 10 9 14 14 H 1.08997 * 113.61333 * 89.11653 * 13 12 10 15 15 C 1.52998 * 113.61546 * 219.94071 * 13 12 10 16 16 N 1.46504 * 109.47014 * 185.00008 * 15 13 12 17 17 C 1.34775 * 119.99963 * 179.97438 * 16 15 13 18 18 O 1.21590 * 119.99932 * 359.97438 * 17 16 15 19 19 C 1.47525 * 119.99824 * 179.97438 * 17 16 15 20 20 C 1.36597 * 125.77044 * 179.97438 * 19 17 16 21 21 N 1.34804 * 106.84145 * 179.97438 * 20 19 17 22 22 C 1.46498 * 126.59905 * 180.02562 * 21 20 19 23 23 C 1.50699 * 109.47432 * 124.99791 * 22 21 20 24 24 N 1.34782 * 119.99978 * 179.97438 * 23 22 21 25 25 O 1.21276 * 120.00054 * 0.02562 * 23 22 21 26 26 N 1.40216 * 106.81092 * 0.02562 * 21 20 19 27 27 N 1.28758 * 108.36308 * 359.74567 * 26 21 20 28 28 C 1.53787 * 113.61517 * 252.50073 * 10 9 7 29 29 H 0.97005 * 119.99717 * 0.02562 * 1 2 3 30 30 H 0.97000 * 120.00083 * 0.02562 * 9 7 2 31 31 H 1.08998 * 113.61779 * 254.53097 * 12 10 9 32 32 H 1.09009 * 113.61101 * 25.43054 * 12 10 9 33 33 H 1.08998 * 109.46554 * 304.99400 * 15 13 12 34 34 H 1.08997 * 109.47707 * 64.99810 * 15 13 12 35 35 H 0.97005 * 119.99967 * 359.97438 * 16 15 13 36 36 H 1.08005 * 126.57743 * 359.96654 * 20 19 17 37 37 H 1.08995 * 109.47421 * 245.00541 * 22 21 20 38 38 H 1.09003 * 109.46725 * 5.00188 * 22 21 20 39 39 H 0.96991 * 120.00159 * 0.02562 * 24 23 22 40 40 H 0.97003 * 119.99947 * 180.02562 * 24 23 22 41 41 H 1.08998 * 113.61143 * 334.55645 * 28 10 9 42 42 H 1.08997 * 113.61794 * 105.46941 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4000 5 1 3.5478 1.4400 -0.7000 6 1 1.4478 2.6526 -0.7002 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 1 3.0655 -3.5640 0.4059 12 6 1.2600 -4.8288 0.5960 13 6 1.8478 -5.6977 -0.5285 14 1 2.7983 -6.1635 -0.2688 15 6 0.8452 -6.6866 -1.1266 16 7 1.5264 -7.5444 -2.0994 17 6 0.8368 -8.4979 -2.7564 18 8 -0.3507 -8.6464 -2.5415 19 6 1.5227 -9.3614 -3.7363 20 6 0.9417 -10.3599 -4.4652 21 7 1.9102 -10.8963 -5.2343 22 6 1.7592 -12.0001 -6.1856 23 6 2.2504 -11.5650 -7.5422 24 7 2.2083 -12.4226 -8.5811 25 8 2.6844 -10.4434 -7.6989 26 7 3.0901 -10.1946 -4.9487 27 7 2.8238 -9.2953 -4.0665 28 6 1.9989 -4.4022 -1.3433 29 1 -0.4850 0.8401 -0.0004 30 1 0.3555 -2.3881 -0.0002 31 1 1.5915 -5.1213 1.5923 32 1 0.1796 -4.7001 0.5291 33 1 0.4237 -7.3020 -0.3318 34 1 0.0455 -6.1375 -1.6237 35 1 2.4739 -7.4262 -2.2705 36 1 -0.0947 -10.6618 -4.4316 37 1 2.3425 -12.8556 -5.8451 38 1 0.7080 -12.2806 -6.2526 39 1 1.8616 -13.3197 -8.4557 40 1 2.5249 -12.1426 -9.4543 41 1 1.1206 -4.1570 -1.9404 42 1 2.9270 -4.3502 -1.9126 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086278836.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:11 Heat of formation + Delta-G solvation = 23.823401 kcal Electronic energy + Delta-G solvation = -25510.227879 eV Core-core repulsion = 21527.211665 eV Total energy + Delta-G solvation = -3983.016215 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.154 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.27113 -40.76910 -40.43222 -39.64327 -36.08300 -35.62566 -34.96378 -34.74279 -32.34210 -31.93612 -29.79932 -28.47560 -26.43177 -25.91688 -24.46766 -23.84042 -22.38830 -22.14864 -21.36211 -20.49054 -19.41806 -18.96975 -18.34256 -18.03843 -17.22377 -17.08458 -16.85373 -16.61110 -16.40317 -16.10454 -15.76460 -15.66139 -15.47108 -15.08711 -14.78660 -14.69615 -14.30507 -13.80601 -13.40720 -13.20891 -13.12475 -13.01063 -12.90734 -12.64644 -12.36214 -12.18781 -12.07283 -11.83958 -11.62579 -11.54228 -11.21774 -11.05650 -10.99877 -10.79587 -10.74554 -10.42307 -10.00864 -8.96005 -7.93465 -5.21467 0.11325 0.63603 0.98575 1.45504 1.47457 1.49353 1.57712 2.12397 2.24876 2.36914 2.57615 3.17341 3.38152 3.48221 3.71326 3.76845 3.78455 3.89728 3.95401 3.98857 4.09485 4.28108 4.34853 4.38128 4.45316 4.58766 4.67819 4.81611 5.00365 5.01129 5.07462 5.23860 5.32301 5.35778 5.43694 5.54242 5.74609 5.80541 6.29079 6.35944 6.42284 6.90236 7.12917 7.24149 7.34534 8.13144 8.35275 9.29986 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.022492 B = 0.001882 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.595826 B =14875.460020 C =15535.938481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.080 4.080 3 Si 0.974 3.026 4 H -0.286 1.286 5 H -0.270 1.270 6 H -0.297 1.297 7 C -0.243 4.243 8 H 0.078 0.922 9 N -0.729 5.729 10 C 0.143 3.857 11 H 0.080 0.920 12 C -0.131 4.131 13 C -0.098 4.098 14 H 0.117 0.883 15 C 0.139 3.861 16 N -0.705 5.705 17 C 0.603 3.397 18 O -0.570 6.570 19 C -0.128 4.128 20 C 0.116 3.884 21 N -0.346 5.346 22 C 0.094 3.906 23 C 0.498 3.502 24 N -0.826 5.826 25 O -0.583 6.583 26 N -0.069 5.069 27 N -0.229 5.229 28 C -0.156 4.156 29 H 0.250 0.750 30 H 0.373 0.627 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.054 0.946 35 H 0.414 0.586 36 H 0.247 0.753 37 H 0.167 0.833 38 H 0.191 0.809 39 H 0.425 0.575 40 H 0.411 0.589 41 H 0.057 0.943 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.217 -36.771 -14.454 39.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.272 4.272 3 Si 0.803 3.197 4 H -0.213 1.213 5 H -0.195 1.195 6 H -0.224 1.224 7 C -0.375 4.375 8 H 0.095 0.905 9 N -0.366 5.366 10 C 0.033 3.967 11 H 0.098 0.902 12 C -0.170 4.170 13 C -0.117 4.117 14 H 0.135 0.865 15 C 0.016 3.984 16 N -0.355 5.355 17 C 0.388 3.612 18 O -0.449 6.449 19 C -0.267 4.267 20 C -0.041 4.041 21 N -0.131 5.131 22 C -0.028 4.028 23 C 0.281 3.719 24 N -0.391 5.391 25 O -0.462 6.462 26 N -0.050 5.050 27 N -0.104 5.104 28 C -0.197 4.197 29 H 0.059 0.941 30 H 0.205 0.795 31 H 0.100 0.900 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.072 0.928 35 H 0.250 0.750 36 H 0.263 0.737 37 H 0.184 0.816 38 H 0.208 0.792 39 H 0.258 0.742 40 H 0.243 0.757 41 H 0.075 0.925 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.266 -35.889 -14.550 38.864 hybrid contribution -0.670 1.007 -0.462 1.295 sum 2.596 -34.883 -15.012 38.065 Atomic orbital electron populations 1.69829 1.06639 1.25967 1.59754 1.25593 0.96409 1.01196 1.03970 0.85133 0.77651 0.79505 0.77445 1.21264 1.19496 1.22399 1.19740 0.91592 0.85475 1.40705 0.90455 1.42611 1.05366 1.01151 1.87495 1.21955 0.95699 0.84004 0.95028 0.90245 1.23296 1.00082 0.95360 0.98305 1.22477 0.99492 0.93004 0.96750 0.86498 1.21341 0.94734 0.91451 0.90910 1.45803 1.14105 1.33929 1.41643 1.16952 0.85373 0.79537 0.79374 1.90782 1.15381 1.71757 1.67025 1.21484 0.91545 1.05227 1.08397 1.23903 0.97677 0.92527 0.89959 1.50126 1.07314 1.26483 1.29206 1.22413 1.09911 0.86761 0.83757 1.20870 0.78108 0.85103 0.87787 1.43565 1.66230 1.17538 1.11809 1.90911 1.47411 1.22797 1.85064 1.82028 1.05504 1.04390 1.13060 1.74628 1.14392 1.13941 1.07407 1.23755 1.00855 0.96428 0.98681 0.94115 0.79548 0.90037 0.91006 0.90481 0.92797 0.74971 0.73723 0.81574 0.79213 0.74174 0.75723 0.92457 0.92097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.13 13.06 21.65 0.28 -60.85 16 2 C -0.08 -4.71 5.50 84.86 0.47 -4.24 16 3 Si 0.97 47.41 29.55 68.60 2.03 49.43 16 4 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 5 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 6 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 7 C -0.24 -13.87 9.97 84.03 0.84 -13.03 16 8 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 9 N -0.73 -37.86 5.40 -320.45 -1.73 -39.59 16 10 C 0.14 5.66 4.48 45.52 0.20 5.86 16 11 H 0.08 3.07 8.10 -2.39 -0.02 3.05 16 12 C -0.13 -4.14 7.39 31.12 0.23 -3.91 16 13 C -0.10 -2.64 3.75 -10.27 -0.04 -2.68 16 14 H 0.12 2.60 8.14 -2.39 -0.02 2.59 16 15 C 0.14 3.73 5.51 86.38 0.48 4.20 16 16 N -0.70 -18.15 5.55 -466.28 -2.59 -20.74 16 17 C 0.60 16.42 7.82 86.69 0.68 17.10 16 18 O -0.57 -17.98 16.86 -4.00 -0.07 -18.05 16 19 C -0.13 -3.01 6.99 40.82 0.29 -2.72 16 20 C 0.12 1.71 11.27 83.85 0.95 2.65 16 21 N -0.35 -4.86 3.41 -350.84 -1.20 -6.06 16 22 C 0.09 0.12 7.02 85.63 0.60 0.72 16 23 C 0.50 4.37 8.14 87.66 0.71 5.08 16 24 N -0.83 0.63 8.87 -173.53 -1.54 -0.91 16 25 O -0.58 -13.88 16.57 -3.02 -0.05 -13.93 16 26 N -0.07 -1.70 12.89 37.02 0.48 -1.23 16 27 N -0.23 -6.15 12.04 -50.00 -0.60 -6.75 16 28 C -0.16 -5.44 7.43 31.13 0.23 -5.21 16 29 H 0.25 15.27 8.31 -92.70 -0.77 14.50 16 30 H 0.37 20.85 7.92 -92.71 -0.73 20.11 16 31 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.07 2.43 8.08 -2.38 -0.02 2.41 16 33 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.05 1.67 7.85 -2.39 -0.02 1.65 16 35 H 0.41 9.82 8.16 -92.70 -0.76 9.06 16 36 H 0.25 1.35 8.06 -2.91 -0.02 1.33 16 37 H 0.17 -0.92 8.14 -2.39 -0.02 -0.94 16 38 H 0.19 -1.81 8.08 -2.39 -0.02 -1.83 16 39 H 0.43 -4.12 8.83 -92.71 -0.82 -4.94 16 40 H 0.41 0.14 8.93 -92.71 -0.83 -0.68 16 41 H 0.06 2.25 7.90 -2.39 -0.02 2.23 16 42 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -93.06 369.55 -1.38 -94.45 By element: Atomic # 1 Polarization: 22.43 SS G_CDS: -2.03 Total: 20.40 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: 5.63 Total: 3.82 kcal Atomic # 7 Polarization: -129.22 SS G_CDS: -6.90 Total: -136.12 kcal Atomic # 8 Polarization: -31.86 SS G_CDS: -0.12 Total: -31.98 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 2.03 Total: 49.43 kcal Total: -93.06 -1.38 -94.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086278836.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.268 kcal (2) G-P(sol) polarization free energy of solvation -93.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds