Wall clock time and date at job start Fri Apr 10 2020 18:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35508 * 116.99977 * 2 1 4 4 C 1.39635 * 120.49342 * 179.97438 * 3 2 1 5 5 C 1.39152 * 118.21156 * 180.02562 * 4 3 2 6 6 C 1.48441 * 120.52044 * 179.97438 * 5 4 3 7 7 O 1.21481 * 120.00326 * 0.02562 * 6 5 4 8 8 N 1.34779 * 120.00092 * 180.02562 * 6 5 4 9 9 C 1.46497 * 120.00450 * 180.02562 * 8 6 5 10 10 H 1.09013 * 109.45552 * 35.02595 * 9 8 6 11 11 C 1.53035 * 109.46002 * 275.07329 * 9 8 6 12 12 C 1.53190 * 109.30904 * 301.33880 * 11 9 8 13 13 N 1.46931 * 108.77964 * 305.36671 * 12 11 9 14 14 C 1.36936 * 120.63205 * 233.63502 * 13 12 11 15 15 H 1.07999 * 120.00184 * 27.65936 * 14 13 12 16 16 C 1.38812 * 119.99887 * 207.66378 * 14 13 12 17 17 N 1.31621 * 119.99527 * 17.35798 * 16 14 13 18 18 Si 1.86794 * 120.00320 * 197.35898 * 16 14 13 19 19 H 1.48500 * 109.46956 * 59.99878 * 18 16 14 20 20 H 1.48495 * 109.47389 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47144 * 300.00114 * 18 16 14 22 22 C 1.46928 * 118.73592 * 53.60496 * 13 12 11 23 23 C 1.53036 * 109.46270 * 154.99646 * 9 8 6 24 24 H 1.09000 * 109.49641 * 178.64182 * 23 9 8 25 25 O 1.42897 * 109.49961 * 298.70828 * 23 9 8 26 26 N 1.33283 * 118.95808 * 0.02562 * 5 4 3 27 27 C 1.31522 * 120.88808 * 359.97438 * 26 5 4 28 28 N 1.31891 * 121.99037 * 0.02562 * 27 26 5 29 29 H 1.08999 * 109.46941 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47163 * 299.99829 * 1 2 3 31 31 H 1.08999 * 109.46904 * 60.00362 * 1 2 3 32 32 H 1.08004 * 120.89655 * 0.02562 * 4 3 2 33 33 H 0.97005 * 119.99522 * 359.97438 * 8 6 5 34 34 H 1.08999 * 109.50027 * 61.29209 * 11 9 8 35 35 H 1.09006 * 109.49607 * 181.39244 * 11 9 8 36 36 H 1.08998 * 109.58723 * 185.58053 * 12 11 9 37 37 H 1.09002 * 109.58814 * 65.15871 * 12 11 9 38 38 H 0.97009 * 119.99573 * 180.02562 * 17 16 14 39 39 H 1.08996 * 109.58411 * 186.60589 * 22 13 12 40 40 H 1.09008 * 109.69847 * 66.25146 * 22 13 12 41 41 H 0.96707 * 113.99749 * 179.97438 * 25 23 9 42 42 H 1.08008 * 119.00138 * 180.27949 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 6 3.4380 1.2925 0.0005 5 6 4.0198 2.5565 0.0011 6 6 5.4966 2.7066 0.0022 7 8 6.2074 1.7214 0.0022 8 7 6.0491 3.9359 0.0032 9 6 7.5066 4.0841 0.0038 10 1 7.9531 3.2839 -0.5865 11 6 8.0262 4.0078 1.4412 12 6 7.3706 5.1122 2.2762 13 7 7.6043 6.4048 1.6179 14 6 8.1660 7.4469 2.3062 15 1 8.8307 7.2511 3.1345 16 6 7.8808 8.7549 1.9392 17 7 6.8364 9.0128 1.1809 18 14 8.9794 10.1490 2.5215 19 1 10.3617 9.9303 2.0250 20 1 8.4634 11.4384 1.9960 21 1 8.9867 10.1863 4.0060 22 6 7.2245 6.5577 0.2068 23 6 7.8818 5.4371 -0.6050 24 1 8.9648 5.5583 -0.5828 25 8 7.4229 5.4955 -1.9571 26 7 3.2303 3.6303 0.0016 27 6 1.9210 3.5057 0.0010 28 7 1.3314 2.3260 0.0005 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 4.0480 0.4012 0.0005 33 1 5.4816 4.7226 0.0028 34 1 7.7791 3.0350 1.8663 35 1 9.1079 4.1427 1.4446 36 1 7.8097 5.1255 3.2737 37 1 6.2988 4.9277 2.3491 38 1 6.6373 9.9269 0.9241 39 1 7.5672 7.5248 -0.1610 40 1 6.1408 6.4926 0.1088 41 1 7.6265 6.3275 -2.4059 42 1 1.3102 4.3965 -0.0031 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090271599.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:21 Heat of formation + Delta-G solvation = -64.439334 kcal Electronic energy + Delta-G solvation = -27671.981250 eV Core-core repulsion = 23652.844925 eV Total energy + Delta-G solvation = -4019.136325 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.51980 -41.17093 -39.71211 -39.17312 -36.84587 -35.77207 -34.65166 -33.58570 -32.97888 -31.37184 -30.49163 -28.68923 -27.33166 -26.01504 -25.40360 -24.02529 -23.48469 -22.48267 -20.38386 -20.09576 -19.38981 -18.79996 -18.07301 -17.52770 -17.39407 -17.03593 -16.74237 -16.62365 -16.38614 -15.95127 -15.83472 -15.49387 -15.47229 -15.20395 -14.96806 -14.83899 -14.36841 -13.86472 -13.53979 -13.26446 -12.98971 -12.86233 -12.72686 -12.68900 -12.61174 -12.20420 -12.00674 -11.98507 -11.82293 -11.59574 -11.54431 -11.23710 -10.92922 -10.63686 -10.55672 -10.36085 -10.11402 -8.69187 -7.87090 -5.32875 -0.71156 -0.14791 1.50404 1.52199 1.54783 1.58613 1.59294 2.06664 2.51904 2.66595 2.80441 2.93072 3.15174 3.28904 3.55291 3.66750 3.76241 3.90233 4.04139 4.13571 4.27748 4.37203 4.39836 4.40081 4.44924 4.47102 4.69908 4.71405 4.86907 4.94224 4.98498 5.07475 5.18154 5.31103 5.41290 5.54425 5.61954 5.67869 5.92309 6.35537 6.37023 6.78898 6.84183 6.98255 7.14398 7.82150 8.34248 9.18340 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.019985 B = 0.003157 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.689140 B = 8867.344722 C = 9396.078145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.304 6.304 3 C 0.364 3.636 4 C -0.189 4.189 5 C 0.151 3.849 6 C 0.567 3.433 7 O -0.555 6.555 8 N -0.676 5.676 9 C 0.163 3.837 10 H 0.085 0.915 11 C -0.132 4.132 12 C 0.145 3.855 13 N -0.601 5.601 14 C -0.266 4.266 15 H 0.068 0.932 16 C -0.044 4.044 17 N -0.928 5.928 18 Si 0.965 3.035 19 H -0.278 1.278 20 H -0.295 1.295 21 H -0.279 1.279 22 C 0.157 3.843 23 C 0.084 3.916 24 H 0.069 0.931 25 O -0.574 6.574 26 N -0.533 5.533 27 C 0.339 3.661 28 N -0.562 5.562 29 H 0.130 0.870 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.168 0.832 33 H 0.414 0.586 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.058 0.942 37 H 0.012 0.988 38 H 0.251 0.749 39 H 0.067 0.933 40 H 0.009 0.991 41 H 0.392 0.608 42 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.930 -13.695 -4.321 17.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.208 6.208 3 C 0.175 3.825 4 C -0.214 4.214 5 C 0.007 3.993 6 C 0.351 3.649 7 O -0.433 6.433 8 N -0.326 5.326 9 C 0.059 3.941 10 H 0.103 0.897 11 C -0.172 4.172 12 C 0.020 3.980 13 N -0.326 5.326 14 C -0.396 4.396 15 H 0.086 0.914 16 C -0.240 4.240 17 N -0.573 5.573 18 Si 0.793 3.207 19 H -0.204 1.204 20 H -0.221 1.221 21 H -0.205 1.205 22 C 0.031 3.969 23 C 0.023 3.977 24 H 0.087 0.913 25 O -0.381 6.381 26 N -0.254 5.254 27 C 0.051 3.949 28 N -0.293 5.293 29 H 0.148 0.852 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.186 0.814 33 H 0.252 0.748 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.077 0.923 37 H 0.030 0.970 38 H 0.060 0.940 39 H 0.085 0.915 40 H 0.027 0.973 41 H 0.241 0.759 42 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -10.097 -14.344 -4.232 18.044 hybrid contribution 0.522 1.342 0.193 1.452 sum -9.575 -13.002 -4.039 16.644 Atomic orbital electron populations 1.23304 0.74358 1.05598 1.03125 1.86265 1.25532 1.22777 1.86192 1.20094 0.89030 0.85876 0.87543 1.21918 0.93392 1.00095 1.05955 1.21267 0.94295 0.89476 0.94279 1.17914 0.86091 0.83758 0.77094 1.90742 1.62143 1.38590 1.51848 1.45869 1.08201 1.07994 1.70585 1.20930 0.79576 0.96843 0.96793 0.89723 1.22278 1.01459 0.99358 0.94095 1.20976 0.96451 0.85197 0.95392 1.44161 1.72376 1.09182 1.06878 1.19451 1.20364 0.85592 1.14200 0.91422 1.25724 0.97733 0.99610 1.00901 1.70157 1.26455 1.19237 1.41468 0.85391 0.78823 0.78486 0.77995 1.20393 1.22126 1.20530 1.21201 0.95313 0.96655 0.83774 1.22608 0.98066 0.95088 0.81971 0.91293 1.86395 1.83487 1.43230 1.24976 1.68433 1.07724 1.32936 1.16279 1.25430 0.87509 0.94821 0.87093 1.68167 1.41666 0.99265 1.20215 0.85170 0.91634 0.91549 0.81429 0.74846 0.90644 0.89871 0.92309 0.96991 0.93966 0.91503 0.97327 0.75853 0.74390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.41 113.37 1.18 1.55 16 2 O -0.30 -6.03 10.49 -88.09 -0.92 -6.95 16 3 C 0.36 8.51 7.54 84.91 0.64 9.15 16 4 C -0.19 -4.96 9.68 22.83 0.22 -4.74 16 5 C 0.15 4.51 6.79 41.86 0.28 4.79 16 6 C 0.57 19.38 7.79 86.96 0.68 20.05 16 7 O -0.55 -20.65 16.08 -3.66 -0.06 -20.71 16 8 N -0.68 -23.61 4.15 -444.71 -1.84 -25.46 16 9 C 0.16 5.69 2.47 45.02 0.11 5.80 16 10 H 0.08 2.97 7.58 -2.38 -0.02 2.95 16 11 C -0.13 -4.52 5.77 30.67 0.18 -4.34 16 12 C 0.15 5.88 6.26 86.36 0.54 6.42 16 13 N -0.60 -28.37 3.00 -699.08 -2.09 -30.46 16 14 C -0.27 -13.88 9.59 84.03 0.81 -13.07 16 15 H 0.07 3.46 7.89 -2.91 -0.02 3.43 16 16 C -0.04 -2.30 4.91 84.86 0.42 -1.89 16 17 N -0.93 -51.63 11.19 21.65 0.24 -51.39 16 18 Si 0.96 42.87 29.59 68.60 2.03 44.90 16 19 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 20 H -0.30 -13.23 7.11 99.48 0.71 -12.53 16 21 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 22 C 0.16 6.95 4.64 86.36 0.40 7.35 16 23 C 0.08 3.02 3.36 30.67 0.10 3.12 16 24 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 25 O -0.57 -18.98 13.21 -148.98 -1.97 -20.95 16 26 N -0.53 -15.05 9.70 -189.35 -1.84 -16.88 16 27 C 0.34 7.51 12.27 180.94 2.22 9.73 16 28 N -0.56 -12.43 9.36 -313.01 -2.93 -15.36 16 29 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.06 0.79 8.12 -2.39 -0.02 0.77 16 31 H 0.07 0.79 8.12 -2.39 -0.02 0.77 16 32 H 0.17 4.18 7.73 -2.91 -0.02 4.16 16 33 H 0.41 15.25 6.25 -92.70 -0.58 14.67 16 34 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 35 H 0.08 2.70 8.14 -2.38 -0.02 2.68 16 36 H 0.06 2.33 7.93 -2.39 -0.02 2.31 16 37 H 0.01 0.51 7.74 -2.39 -0.02 0.49 16 38 H 0.25 13.64 8.31 -92.70 -0.77 12.87 16 39 H 0.07 3.32 6.03 -2.39 -0.01 3.30 16 40 H 0.01 0.42 6.65 -2.38 -0.02 0.40 16 41 H 0.39 10.25 9.08 -74.05 -0.67 9.57 16 42 H 0.24 3.41 8.06 -2.91 -0.02 3.39 16 Total: -1.00 -65.41 351.60 -1.78 -67.19 By element: Atomic # 1 Polarization: 32.32 SS G_CDS: -0.17 Total: 32.15 kcal Atomic # 6 Polarization: 36.15 SS G_CDS: 7.78 Total: 43.92 kcal Atomic # 7 Polarization: -131.09 SS G_CDS: -8.46 Total: -139.55 kcal Atomic # 8 Polarization: -45.66 SS G_CDS: -2.95 Total: -48.61 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -65.41 -1.78 -67.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090271599.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.747 kcal (2) G-P(sol) polarization free energy of solvation -65.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds