Wall clock time and date at job start Fri Apr 10 2020 18:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35508 * 116.99780 * 2 1 4 4 C 1.39639 * 120.49034 * 180.02562 * 3 2 1 5 5 C 1.39151 * 118.20551 * 179.97438 * 4 3 2 6 6 C 1.48449 * 120.51287 * 179.97438 * 5 4 3 7 7 O 1.21476 * 120.00656 * 359.97438 * 6 5 4 8 8 N 1.34781 * 119.99693 * 179.97438 * 6 5 4 9 9 C 1.46499 * 119.99985 * 179.97438 * 8 6 5 10 10 H 1.08996 * 109.46208 * 324.97375 * 9 8 6 11 11 C 1.53044 * 109.46007 * 84.93549 * 9 8 6 12 12 C 1.52755 * 109.38132 * 181.25927 * 11 9 8 13 13 N 1.46923 * 109.00900 * 305.58408 * 12 11 9 14 14 C 1.36943 * 120.62930 * 233.58508 * 13 12 11 15 15 H 1.08000 * 119.99888 * 152.17192 * 14 13 12 16 16 C 1.38811 * 119.99955 * 332.17173 * 14 13 12 17 17 N 1.31614 * 120.00254 * 342.76805 * 16 14 13 18 18 Si 1.86801 * 119.99678 * 162.77313 * 16 14 13 19 19 H 1.48501 * 109.46686 * 269.99566 * 18 16 14 20 20 H 1.48499 * 109.47518 * 29.99570 * 18 16 14 21 21 H 1.48502 * 109.46873 * 149.99729 * 18 16 14 22 22 C 1.46927 * 118.73893 * 53.31139 * 13 12 11 23 23 C 1.53046 * 109.45791 * 204.99746 * 9 8 6 24 24 H 1.08999 * 109.49861 * 298.56732 * 23 9 8 25 25 O 1.42899 * 109.52272 * 58.65171 * 23 9 8 26 26 N 1.33279 * 118.96473 * 0.25122 * 5 4 3 27 27 C 1.31528 * 120.88570 * 359.48351 * 26 5 4 28 28 N 1.31890 * 121.98663 * 0.53374 * 27 26 5 29 29 H 1.09001 * 109.46927 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47133 * 299.99331 * 1 2 3 31 31 H 1.08997 * 109.47066 * 60.00305 * 1 2 3 32 32 H 1.07999 * 120.89776 * 0.02562 * 4 3 2 33 33 H 0.97006 * 119.99849 * 359.97438 * 8 6 5 34 34 H 1.09007 * 109.49256 * 301.33300 * 11 9 8 35 35 H 1.09002 * 109.49531 * 61.42998 * 11 9 8 36 36 H 1.09005 * 109.50719 * 185.70148 * 12 11 9 37 37 H 1.09006 * 109.43430 * 65.42411 * 12 11 9 38 38 H 0.96995 * 120.00322 * 180.02562 * 17 16 14 39 39 H 1.09004 * 109.58525 * 66.43417 * 22 13 12 40 40 H 1.08995 * 109.58430 * 186.71314 * 22 13 12 41 41 H 0.96700 * 114.00229 * 179.85787 * 25 23 9 42 42 H 1.07995 * 119.00761 * 180.24739 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 6 3.4380 1.2925 -0.0005 5 6 4.0197 2.5565 -0.0011 6 6 5.4966 2.7066 -0.0011 7 8 6.2073 1.7214 -0.0002 8 7 6.0490 3.9359 -0.0021 9 6 7.5065 4.0841 -0.0016 10 1 7.9526 3.2842 0.5894 11 6 8.0273 4.0074 -1.4386 12 6 9.5499 4.1306 -1.4332 13 7 9.9282 5.3573 -0.7186 14 6 10.7469 6.2836 -1.3078 15 1 10.6752 7.3240 -1.0267 16 6 11.6688 5.8854 -2.2661 17 7 12.0020 4.6166 -2.3716 18 14 12.4365 7.1506 -3.4060 19 1 11.6011 7.2893 -4.6258 20 1 12.5173 8.4598 -2.7098 21 1 13.8016 6.7084 -3.7885 22 6 9.4066 5.5742 0.6377 23 6 7.8812 5.4374 0.6070 24 1 7.4562 6.2385 0.0022 25 8 7.3680 5.5210 1.9380 26 7 3.2303 3.6304 0.0041 27 6 1.9209 3.5058 -0.0006 28 7 1.3314 2.3260 -0.0001 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 4.0480 0.4013 -0.0014 33 1 5.4815 4.7227 -0.0032 34 1 7.7399 3.0526 -1.8792 35 1 7.6009 4.8219 -2.0240 36 1 9.9149 4.1780 -2.4592 37 1 9.9820 3.2660 -0.9291 38 1 12.6464 4.3384 -3.0410 39 1 9.8268 4.8298 1.3141 40 1 9.6793 6.5729 0.9786 41 1 7.5706 6.3536 2.3861 42 1 1.3101 4.3964 -0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090271601.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:27 Heat of formation + Delta-G solvation = -42.286042 kcal Electronic energy + Delta-G solvation = -27061.266741 eV Core-core repulsion = 23043.091055 eV Total energy + Delta-G solvation = -4018.175686 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.63139 -39.80377 -38.77568 -37.89694 -35.41992 -34.46821 -33.66214 -32.12481 -31.90368 -30.05654 -28.63800 -28.02367 -25.81968 -24.59466 -24.46509 -22.45841 -21.96406 -20.77821 -19.73783 -18.86018 -18.50095 -17.16724 -16.70936 -16.63924 -16.31139 -16.00864 -15.73138 -15.27171 -15.11517 -14.87928 -14.65280 -14.13915 -14.07977 -13.90642 -13.59499 -13.20981 -12.79163 -12.47917 -12.31939 -12.15149 -12.02559 -11.59396 -11.19055 -11.12675 -10.89587 -10.74490 -10.67397 -10.39766 -10.33673 -10.26607 -9.95100 -9.82248 -9.70686 -9.52385 -9.47379 -8.81847 -8.47489 -6.79007 -5.85821 -3.30038 0.24887 0.68054 2.37154 2.71716 3.10052 3.34580 3.41326 3.42719 3.60025 3.65161 3.75395 4.35427 4.45985 4.52876 4.67021 4.80446 4.86123 4.98059 5.16663 5.26050 5.28212 5.31069 5.45808 5.53348 5.74431 5.75484 5.94707 6.07502 6.25786 6.35304 6.46060 6.48497 6.64184 6.67319 6.75883 6.79560 7.27275 7.50567 7.59399 7.71473 7.72326 7.91998 8.22956 8.36584 9.12077 9.74448 10.29999 11.22875 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.025712 B = 0.002592 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.706548 B =10797.862865 C =11133.841684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.298 6.298 3 C 0.363 3.637 4 C -0.185 4.185 5 C 0.166 3.834 6 C 0.566 3.434 7 O -0.523 6.523 8 N -0.687 5.687 9 C 0.160 3.840 10 H 0.091 0.909 11 C -0.147 4.147 12 C 0.171 3.829 13 N -0.588 5.588 14 C -0.259 4.259 15 H 0.068 0.932 16 C 0.005 3.995 17 N -0.899 5.899 18 Si 0.905 3.095 19 H -0.287 1.287 20 H -0.279 1.279 21 H -0.291 1.291 22 C 0.121 3.879 23 C 0.080 3.920 24 H 0.058 0.942 25 O -0.571 6.571 26 N -0.517 5.517 27 C 0.334 3.666 28 N -0.568 5.568 29 H 0.102 0.898 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.167 0.833 33 H 0.409 0.591 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.094 0.906 37 H 0.025 0.975 38 H 0.256 0.744 39 H 0.030 0.970 40 H 0.061 0.939 41 H 0.375 0.625 42 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.214 -3.384 5.227 23.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.201 6.201 3 C 0.175 3.825 4 C -0.210 4.210 5 C 0.021 3.979 6 C 0.348 3.652 7 O -0.398 6.398 8 N -0.336 5.336 9 C 0.057 3.943 10 H 0.109 0.891 11 C -0.188 4.188 12 C 0.045 3.955 13 N -0.312 5.312 14 C -0.389 4.389 15 H 0.085 0.915 16 C -0.194 4.194 17 N -0.542 5.542 18 Si 0.734 3.266 19 H -0.213 1.213 20 H -0.204 1.204 21 H -0.217 1.217 22 C -0.007 4.007 23 C 0.019 3.981 24 H 0.076 0.924 25 O -0.375 6.375 26 N -0.238 5.238 27 C 0.046 3.954 28 N -0.299 5.299 29 H 0.120 0.880 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.184 0.816 33 H 0.244 0.756 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.112 0.888 37 H 0.043 0.957 38 H 0.066 0.934 39 H 0.048 0.952 40 H 0.080 0.920 41 H 0.221 0.779 42 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -22.167 -4.286 4.986 23.121 hybrid contribution 0.430 0.903 -0.503 1.119 sum -21.736 -3.384 4.483 22.450 Atomic orbital electron populations 1.23005 0.76297 1.03632 1.02883 1.86273 1.23637 1.23609 1.86569 1.20031 0.89235 0.85166 0.88099 1.21946 0.92670 1.00785 1.05552 1.21587 0.95312 0.88522 0.92450 1.17649 0.84983 0.84442 0.78090 1.90822 1.61160 1.38058 1.49787 1.45950 1.08656 1.07514 1.71473 1.21154 0.77800 0.97477 0.97916 0.89092 1.22560 1.01158 1.01285 0.93755 1.20752 0.87228 0.87779 0.99787 1.44036 1.55008 1.21882 1.10284 1.19168 1.12101 0.88493 1.19101 0.91474 1.25071 0.96724 0.96169 1.01461 1.70030 1.34097 1.14755 1.35353 0.86260 0.78310 0.80825 0.81162 1.21344 1.20394 1.21692 1.21530 0.90099 0.99819 0.89204 1.22767 0.96773 0.96046 0.82479 0.92383 1.86482 1.79752 1.42746 1.28517 1.68388 1.06575 1.33032 1.15829 1.24701 0.88062 0.93812 0.88815 1.68042 1.42031 0.99339 1.20480 0.88010 0.91819 0.91810 0.81581 0.75568 0.91785 0.92138 0.88773 0.95730 0.93413 0.95239 0.92042 0.77892 0.77722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.23 10.41 101.05 1.05 1.28 16 2 O -0.30 -2.97 10.49 -18.22 -0.19 -3.16 16 3 C 0.36 4.08 7.54 -16.68 -0.13 3.95 16 4 C -0.19 -2.31 9.68 -38.72 -0.37 -2.68 16 5 C 0.17 2.24 6.79 -82.69 -0.56 1.68 16 6 C 0.57 9.16 7.79 -12.05 -0.09 9.07 16 7 O -0.52 -9.97 16.08 5.39 0.09 -9.88 16 8 N -0.69 -10.74 4.91 -54.51 -0.27 -11.01 16 9 C 0.16 2.87 2.12 -67.88 -0.14 2.73 16 10 H 0.09 1.85 7.58 -51.93 -0.39 1.45 16 11 C -0.15 -2.87 5.63 -26.83 -0.15 -3.02 16 12 C 0.17 4.03 5.28 -3.94 -0.02 4.01 16 13 N -0.59 -14.22 3.00 -172.58 -0.52 -14.74 16 14 C -0.26 -6.86 9.58 -15.06 -0.14 -7.00 16 15 H 0.07 1.73 7.89 -52.49 -0.41 1.31 16 16 C 0.01 0.14 4.91 -17.43 -0.09 0.05 16 17 N -0.90 -25.65 11.19 55.49 0.62 -25.03 16 18 Si 0.90 21.17 29.59 -169.99 -5.03 16.14 16 19 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 C 0.12 2.42 6.14 -3.71 -0.02 2.40 16 23 C 0.08 1.36 3.14 -26.61 -0.08 1.27 16 24 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 25 O -0.57 -8.51 13.16 -35.23 -0.46 -8.97 16 26 N -0.52 -6.11 9.70 -11.20 -0.11 -6.22 16 27 C 0.33 3.17 12.27 -92.30 -1.13 2.04 16 28 N -0.57 -5.85 9.36 -14.65 -0.14 -5.99 16 29 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.39 8.12 -51.93 -0.42 -0.04 16 31 H 0.06 0.39 8.12 -51.93 -0.42 -0.03 16 32 H 0.17 2.02 7.73 -52.49 -0.41 1.61 16 33 H 0.41 5.72 7.99 -40.82 -0.33 5.39 16 34 H 0.06 1.24 8.14 -51.92 -0.42 0.81 16 35 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.09 2.47 6.04 -51.93 -0.31 2.16 16 37 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 39 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 41 H 0.37 3.98 9.08 45.56 0.41 4.39 16 42 H 0.21 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 355.79 15.07 5.36 5.36 Total: -1.00 -32.27 355.79 -7.32 -39.60 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -4.79 Total: 8.11 kcal Atomic # 6 Polarization: 17.68 SS G_CDS: -1.89 Total: 15.79 kcal Atomic # 7 Polarization: -62.58 SS G_CDS: -0.41 Total: -62.99 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: -0.57 Total: -22.01 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.14 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.27 -7.32 -39.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090271601.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.690 kcal (2) G-P(sol) polarization free energy of solvation -32.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds